View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_low_21 (Length: 354)
Name: NF4418_low_21
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 328
Target Start/End: Complemental strand, 33153244 - 33152932
Alignment:
| Q |
15 |
acatgttcctgcaagagatcaactgattgattcttgttggccacgttataagcacatatgaatccaacagcttcaatatgttgcttcttccggataagat |
114 |
Q |
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| T |
33153244 |
acatgttcctgcaagagatcaactgattgattcttgttggccacgttataagcacatatgaatctaacagcttcaatatgttgcttcttccggataagat |
33153145 |
T |
|
| Q |
115 |
tctgaacaaaatctgcaagttgcaataaagtttcacgtcaaagtaaatagggaggagaacacaacacctcaaaccatttnnnnnnntagaacatatacan |
214 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33153144 |
tctgaacaaaatctgcaagttgcaataaagtttcacttcaaagtaaatagggaggagaacacaacacctcaaaccatttaaaaaaatagaacatataca- |
33153046 |
T |
|
| Q |
215 |
nnnnnnnnnngtcttaaccctccaattcttaagggatagagaccgtggtagttcggagttcggttggaagataaccaaagtttggcctacgattgttcca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33153045 |
tattttttttgtcttaaccctccaattcttaagggatagagaccgtggtaattcggagttcggttggaagataaccaaagtttggcctacgattgttcca |
33152946 |
T |
|
| Q |
315 |
gtcatgacttgaac |
328 |
Q |
| |
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||||||||| |||| |
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| T |
33152945 |
gtcatgactcgaac |
33152932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 2363674 - 2363551
Alignment:
| Q |
15 |
acatgttcctgcaagagatcaactgattgattcttgttggccacgttataagcacatatgaatccaacagcttcaatatgttgcttcttccggataagat |
114 |
Q |
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| T |
2363674 |
acatgttcccgcaatagaccaactgattgattcttagtggctgtgttatatgcgcagatgaatctaacagcctcaatatattgctgcttcatgataagat |
2363575 |
T |
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| Q |
115 |
tctgaacaaaatctgcaagttgca |
138 |
Q |
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| T |
2363574 |
tctgaacaaaatctgcaaggtgca |
2363551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 39372330 - 39372209
Alignment:
| Q |
18 |
tgttcctgcaagagatcaactgattgattcttgttggccacgttataagcacatatgaatccaacagcttcaatatgttgcttcttccggataagattct |
117 |
Q |
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||||| ||||||||||||||| || |||||||||||||| |||||| ||| | ||||||| ||||||| ||| | ||||||| ||| |||||||||| |
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| T |
39372330 |
tgttcttgcaagagatcaactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattct |
39372231 |
T |
|
| Q |
118 |
gaacaaaatctgcaagttgcaa |
139 |
Q |
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| T |
39372230 |
caacaaaatctgcaaggtgcaa |
39372209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 39605220 - 39605090
Alignment:
| Q |
24 |
tgcaagagatcaactgattgattcttgttggccacgttataagcacatatgaatccaacagcttcaatatgttgcttcttccggataagattctgaacaa |
123 |
Q |
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||||||||||| || ||||||||||||||| | ||||||||| ||||||| | |||||||||||| ||| |||||| |||||| |||||||||| |
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| T |
39605220 |
tgcaagagatcgtttgtttgattcttgttggc-attatataagcacgaatgaatctagcagcttcaatattttgtttcttcatgataagtttctgaacaa |
39605122 |
T |
|
| Q |
124 |
aatctgcaagttgcaataaagtttcacgtcaa |
155 |
Q |
| |
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|||||||||| |||| ||| |||||| |||| |
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| T |
39605121 |
aatctgcaaggtgcaccaaaatttcacttcaa |
39605090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 39492471 - 39492561
Alignment:
| Q |
60 |
ttataagcacatatgaatccaacagcttcaatatgttgcttcttccggataagattctgaacaaaatctgcaagttgcaataaagtttcac |
150 |
Q |
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||||| ||||| ||||||| |||||||||||||| ||||| ||| | ||| | |||||||||||||||| |||| ||||| ||| |||||| |
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| T |
39492471 |
ttatatgcacaaatgaatctaacagcttcaatatattgctactttctgatgacattctgaacaaaatctacaagctgcaacaaaatttcac |
39492561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 39379481 - 39379596
Alignment:
| Q |
24 |
tgcaagagatcaactgattgattcttgttggccacgttataagcacatatgaatccaacagcttcaatatgttgcttcttccggataagattctgaacaa |
123 |
Q |
| |
|
||||||||||||||| || | |||||| |||| |||||| ||||| |||||| ||||||| ||| | ||||||| || ||||||||||| ||||| |
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| T |
39379481 |
tgcaagagatcaacttgtttagtcttgtcagccaagttatatgcacaactgaatctaacagctacaacaaattgcttcctcttgataagattctcaacaa |
39379580 |
T |
|
| Q |
124 |
aatctgcaagttgcaa |
139 |
Q |
| |
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|||||||||| ||||| |
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| T |
39379581 |
aatctgcaaggtgcaa |
39379596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 39126332 - 39126259
Alignment:
| Q |
60 |
ttataagcacatatgaatccaacagcttcaatatgttgcttcttccggataagattctgaacaaaatctgcaag |
133 |
Q |
| |
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||||| ||||| ||||||| |||| |||| ||||||||| ||||| |||| |||||| | ||||||||||||| |
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| T |
39126332 |
ttatatgcacaaatgaatcaaacaacttccatatgttgcaacttccagatatgattctaagcaaaatctgcaag |
39126259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 139
Target Start/End: Original strand, 39386286 - 39386391
Alignment:
| Q |
34 |
caactgattgattcttgttggccacgttataagcacatatgaatccaacagcttcaatatgttgcttcttccggataagattctgaacaaaatctgcaag |
133 |
Q |
| |
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||||| || ||||||||| | ||| |||||| ||||| |||||| ||||||||||| | ||||||| || |||||||| || ||||||||||| ||| |
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| T |
39386286 |
caactaatcgattcttgtcgtccaagttatatgcacaactgaatctaacagcttcaacaaattgcttcctcttgataagatgcttaacaaaatctggaag |
39386385 |
T |
|
| Q |
134 |
ttgcaa |
139 |
Q |
| |
|
||||| |
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|
| T |
39386386 |
atgcaa |
39386391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 26 - 133
Target Start/End: Complemental strand, 51577013 - 51576903
Alignment:
| Q |
26 |
caagagatcaac---tgattgattcttgttggccacgttataagcacatatgaatccaacagcttcaatatgttgcttcttccggataagattctgaaca |
122 |
Q |
| |
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|||||||||||| ||||||||||||||||| | |||| ||||||| ||||||| ||||||||||| |||||||| || |||||||||||||||| |
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|
| T |
51577013 |
caagagatcaacggatgattgattcttgttggtaatgttacaagcacaaatgaatctaacagcttcaacatgttgctgattatcgataagattctgaaca |
51576914 |
T |
|
| Q |
123 |
aaatctgcaag |
133 |
Q |
| |
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||||||||||| |
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|
| T |
51576913 |
aaatctgcaag |
51576903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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