View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_low_22 (Length: 354)
Name: NF4418_low_22
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 6 - 279
Target Start/End: Original strand, 36277334 - 36277607
Alignment:
| Q |
6 |
aggagcacagacctatggattcctatgttaggtcgtggcatttcatatttcatcacttctttccctgttcattttcaattaattaaaacatatataatat |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36277334 |
aggaacacaaacctatggattcctatgttaggtcgtggcatttcatatttcatcacttctttccctgttcattttcaattaattaaaacatatataatat |
36277433 |
T |
|
| Q |
106 |
catactccatgttaattaaagtgaaaagaaactctgtagtacatataattgatgtgaccaaattaaaggacttaccaaatgtagcatcagttgtgcctgg |
205 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36277434 |
catactccatgttaattaaagtgaaaagaaactctatagtacatataattgatgtgaccaaattaaaggacttaccaaatgtagcatcagttgtgcctgg |
36277533 |
T |
|
| Q |
206 |
tatatctgtgactatcctgtgatggacaataaaaataggttagaaactttgtttatgtcaagcttaatataaac |
279 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36277534 |
tatatctgtgactatcctgtgatggacaacaaaaataggttagaaactttgtttatgtcaagcttaatataaac |
36277607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 339
Target Start/End: Original strand, 9302693 - 9302726
Alignment:
| Q |
306 |
ccctacatataacaatgcatgtcagtgtcaattg |
339 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
9302693 |
ccctacatataacaatgcatgtccgtgtcaattg |
9302726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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