View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_low_23 (Length: 346)
Name: NF4418_low_23
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 34955735 - 34955425
Alignment:
| Q |
17 |
agatgaaatggtcacaaacgaggtacacaataaatcacatgaatctttgagtacaacaaatgaaaatttgaggtacttgtctatgaaatatttaagttat |
116 |
Q |
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| T |
34955735 |
agatgaaatggtcacaaacgaggtacacaa------acatgaatctttgagtacaacaaatgaaaatttgaggtacttgtctatgaaatatttaggttat |
34955642 |
T |
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| Q |
117 |
gtagttattggttacattttatttctacatgttataggtgtaattggggtgtctctttaccttacaattattcctagtacaaaacaactactaaaaaaca |
216 |
Q |
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| T |
34955641 |
gtagttattggttacattttatttctacatgttataggtgtaattggggtgtctctttaccttacaattattcctagtacaaaacaactactaaaaaaca |
34955542 |
T |
|
| Q |
217 |
agggtctaaaaatgttgacattttctgtttttactatagtttcatcattttcaagttgtggttttgttccaacaaatgaaaacatgattgattttagaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34955541 |
agggtctaaaaatgttgacattttctgtttttactatagtttcatcattttcaagttgtggttttgttccaacaaatgaaaacatgattgattttagaaa |
34955442 |
T |
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| Q |
317 |
gaattcaggtcttcttc |
333 |
Q |
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||||||||||||||||| |
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| T |
34955441 |
gaattcaggtcttcttc |
34955425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 54 - 333
Target Start/End: Complemental strand, 34974115 - 34973836
Alignment:
| Q |
54 |
catgaatctttgagtacaacaaatgaaaatttgaggtacttgtctatgaaatatttaagttatgtagttattggttacattttatttctacatgttatag |
153 |
Q |
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| T |
34974115 |
catgaatctttgagtacaacaaatgaaaatttgaggtatttgtctatgaaatatttgggttatgtagtttttgcttactttttaattattcacattatag |
34974016 |
T |
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| Q |
154 |
gtgtaattggggtgtctctttaccttacaattattcctagtacaaaacaactactaaaaaacaagggtctaaaaatgttgacattttctgtttttactat |
253 |
Q |
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| T |
34974015 |
gtgtaattggggtgtctatttaccttgcaattattcctagtgctaaacaaatacttaaaaacaagggtctaaaaatgttcacattttctgtttttactat |
34973916 |
T |
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| Q |
254 |
agtttcatcattttcaagttgtggttttgttccaacaaatgaaaacatgattgattttagaaagaattcaggtcttcttc |
333 |
Q |
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| T |
34973915 |
agtttcaacatttgcaagttgtggatttgttccaacaaatgaaaacatggttgtttttagaaagaattcaggtcttcttc |
34973836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 47 - 333
Target Start/End: Complemental strand, 35034867 - 35034581
Alignment:
| Q |
47 |
taaatcacatgaatctttgagtacaacaaatgaaaatttgaggtacttgtctatgaaatatttaagttatgtagttattggttacattttatttctacat |
146 |
Q |
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| T |
35034867 |
taaatcacatgaaccattgagtaccacaagtgaaaatttgaggtatttgtctatgaaatatttgggttatatagttcttggttacattataattctacat |
35034768 |
T |
|
| Q |
147 |
gttataggtgtaattggggtgtctctttaccttacaattattcctagtacaaaacaactactaaaaaacaagggtctaaaaatgttgacattttctgttt |
246 |
Q |
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||||||||||| |||||||||||||||||||| |||| ||||||||| | |||||| ||||| |||||||||||||||||||||| ||||||||| ||| |
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| T |
35034767 |
attataggtgtatttggggtgtctctttaccttgcaatgattcctagtgctaaacaagtactagaaaacaagggtctaaaaatgttcacattttctcttt |
35034668 |
T |
|
| Q |
247 |
ttactatagtttcatcattttcaagttgtggttttgttccaacaaatgaaaacatgattgattttagaaagaattcaggtcttcttc |
333 |
Q |
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|||||||||||||| |||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
35034667 |
ttactatagtttcaacattttcaagttgtggatttattccaacaaatgaaaacatggttgtttttagaaagaattcaggtcttcttc |
35034581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 34974197 - 34974152
Alignment:
| Q |
20 |
tgaaatggtcacaaacgaggtacacaataaatcacatgaatctttg |
65 |
Q |
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| T |
34974197 |
tgaaatggtcacaaatgaggtacacaataaatcacatgaatctttg |
34974152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 333
Target Start/End: Complemental strand, 35000601 - 35000502
Alignment:
| Q |
234 |
acattttctgtttttactatagtttcatcattttcaagttgtggttttgttccaacaaatgaaaacatgattgattttagaaagaattcaggtcttcttc |
333 |
Q |
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||||||||| | ||||| ||||||||| ||||| ||| ||||||| ||| ||||| ||||| |||||||| | ||| | ||||||||||| ||||||| |
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| T |
35000601 |
acattttctttatttaccatagtttcaacatttgcaacatgtggttatgtaccaaccaatgagaacatgatagttttcaagaagaattcaggacttcttc |
35000502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 333
Target Start/End: Complemental strand, 35046962 - 35046863
Alignment:
| Q |
234 |
acattttctgtttttactatagtttcatcattttcaagttgtggttttgttccaacaaatgaaaacatgattgattttagaaagaattcaggtcttcttc |
333 |
Q |
| |
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||||||||| | ||||| ||||||||| ||||| |||||||||||| | | || || ||||| |||||||| | ||| | ||||||||||| ||||||| |
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| T |
35046962 |
acattttctttatttacaatagtttcaacatttgcaagttgtggttatatccctaccaatgagaacatgatggttttcaagaagaattcaggacttcttc |
35046863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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