View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4418_low_24 (Length: 332)

Name: NF4418_low_24
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4418_low_24
NF4418_low_24
[»] chr3 (10 HSPs)
chr3 (10-332)||(10877455-10877777)
chr3 (212-319)||(43445505-43445612)
chr3 (234-332)||(53589987-53590085)
chr3 (212-328)||(7320148-7320263)
chr3 (240-331)||(17508781-17508872)
chr3 (253-330)||(51160944-51161021)
chr3 (215-331)||(50426013-50426129)
chr3 (166-212)||(53590463-53590509)
chr3 (166-210)||(43445133-43445177)
chr3 (166-199)||(7321199-7321232)
[»] chr1 (9 HSPs)
chr1 (206-331)||(39997470-39997595)
chr1 (212-328)||(16824076-16824192)
chr1 (212-322)||(8266791-8266901)
chr1 (212-328)||(11075885-11076001)
chr1 (240-327)||(18565921-18566008)
chr1 (212-329)||(2887592-2887710)
chr1 (212-322)||(9427761-9427871)
chr1 (212-301)||(3620880-3620969)
chr1 (166-209)||(2887224-2887267)
[»] chr8 (11 HSPs)
chr8 (212-331)||(15243518-15243637)
chr8 (212-327)||(1758589-1758704)
chr8 (212-311)||(12607975-12608074)
chr8 (215-330)||(12563321-12563435)
chr8 (239-319)||(12597097-12597177)
chr8 (212-330)||(36128147-36128261)
chr8 (212-302)||(28932223-28932313)
chr8 (166-211)||(15243150-15243195)
chr8 (166-211)||(23589609-23589654)
chr8 (166-210)||(1759019-1759063)
chr8 (166-210)||(12562951-12562995)
[»] scaffold0013 (1 HSPs)
scaffold0013 (212-331)||(54730-54849)
[»] chr2 (8 HSPs)
chr2 (212-322)||(44440461-44440571)
chr2 (212-331)||(4653720-4653839)
chr2 (212-331)||(8271091-8271212)
chr2 (212-294)||(45036059-45036141)
chr2 (239-322)||(22540123-22540206)
chr2 (212-317)||(6571012-6571117)
chr2 (166-211)||(4653350-4653395)
chr2 (262-294)||(45041761-45041793)
[»] chr7 (12 HSPs)
chr7 (212-331)||(27046122-27046241)
chr7 (212-331)||(12501706-12501825)
chr7 (213-331)||(10328937-10329055)
chr7 (212-321)||(5464539-5464648)
chr7 (212-322)||(12527340-12527450)
chr7 (234-331)||(5949538-5949635)
chr7 (253-328)||(41029397-41029472)
chr7 (212-318)||(25828380-25828485)
chr7 (252-302)||(31443626-31443676)
chr7 (166-206)||(12501645-12501685)
chr7 (166-206)||(12527279-12527319)
chr7 (287-331)||(13278638-13278682)
[»] chr4 (12 HSPs)
chr4 (213-332)||(50945993-50946112)
chr4 (212-329)||(11371634-11371750)
chr4 (212-319)||(41940530-41940635)
chr4 (212-330)||(25969778-25969893)
chr4 (212-332)||(47924240-47924360)
chr4 (212-331)||(27184736-27184855)
chr4 (216-330)||(40656116-40656230)
chr4 (209-298)||(54259406-54259495)
chr4 (212-322)||(6450497-6450607)
chr4 (166-212)||(47924683-47924729)
chr4 (244-308)||(23397572-23397636)
chr4 (166-207)||(41940954-41940995)
[»] chr6 (2 HSPs)
chr6 (212-331)||(2443355-2443474)
chr6 (212-316)||(29047284-29047387)
[»] chr5 (2 HSPs)
chr5 (264-322)||(38697446-38697504)
chr5 (246-302)||(1362525-1362581)


Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 332
Target Start/End: Original strand, 10877455 - 10877777
Alignment:
Q  10 ataatactcgtaacagttgagatggatcaaatcatgaagtagatgatgattatagtgaacttcaatattttgagattctaatttcgattgattttgttgt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10877455 ataatactcgtaacagttgagatggatcaaatcatgaagtagatgatgattatagtgaacttcaatattttgagattctaatttcgattgattttgttgt 10877554  T
Q  110 ttcacacttcgtaattttgaaatattttaattagacctacaattttagattcttctatgcatttcttactatctcaatcttggtttggactcacactcat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10877555 ttcacacttcgtaattttgaaatattttaattagacctacaattttagattcttctatgcatttcttactatctcaatcttggtttggactcacactcat 10877654  T
Q  210 cgtattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcac 309  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10877655 catattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcac 10877754  T
Q  310 atacaaggtgctcggctcactga 332  Q
    || ||||||||||||||||||||    
T  10877755 atgcaaggtgctcggctcactga 10877777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 212 - 319
Target Start/End: Original strand, 43445505 - 43445612
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||| ||||| ||||||||| ||| |||||||||| |||||||  || ||||||||||| || |||||| ||||||||||||||||  || ||||||||    
T  43445505 tattatagatgatttacatagaaataaaaatacaacgttgatgcccgttcttagggaacaaaatatgtgttcagattttatggctaacaaattatcacat 43445604  T
Q  312 acaaggtg 319  Q
    ||||||||    
T  43445605 acaaggtg 43445612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 332
Target Start/End: Complemental strand, 53590085 - 53589987
Alignment:
Q  234 aatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcactga 332  Q
    |||||||||||||||||| |||||||  | |||||||| || ||||||||||||||||||||||||||   ||||||| ||| ||||||  ||||||||    
T  53590085 aatgaaaatacaacattggtgcatgttttaagggaacaaaatatgtgtgcagattttatggctaaggagagatcacatgcaatgtgctcttctcactga 53589987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 328
Target Start/End: Complemental strand, 7320263 - 7320148
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    |||||||| |||||||||| | |||| |||||||| |||| ||||||  |||||| |||| || |||||||||||||||||||||||| ||| ||| |||    
T  7320263 tattagagttgctttacatggaaatggaaatacaatattggtgcatgctcttagg-aacaaaatatgtgtgcagattttatggctaagaaaggatctcat 7320165  T
Q  312 acaaggtgctcggctca 328  Q
     ||||||| || |||||    
T  7320164 gcaaggtgatctgctca 7320148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 331
Target Start/End: Original strand, 17508781 - 17508872
Alignment:
Q  240 aatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcactg 331  Q
    |||||||||||| ||||||| ||||||||||| || |||| |||| ||||||| | | |||||| ||||||| |||||||||| ||| ||||    
T  17508781 aatacaacattggtgcatgttcttagggaacaaaatatgtttgcatattttatagtttaggaaggatcacatgcaaggtgctctgcttactg 17508872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 51160944 - 51161021
Alignment:
Q  253 tgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcact 330  Q
    ||||||| |||||  |||| |||||||||||| |||||||||||||||| | |||| || |||||||||| |||||||    
T  51160944 tgcatgttcttagaaaacaaaacatgtgtgcaaattttatggctaaggagggatcatattcaaggtgctctgctcact 51161021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 215 - 331
Target Start/End: Original strand, 50426013 - 50426129
Alignment:
Q  215 tagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacataca 314  Q
    |||||||| ||||||  | |||||||||||||||||  ||||| |  ||| |||||| || |||| |||| |||||||||| ||||||| ||||||| ||    
T  50426013 tagagatgatttacacggaaatgaaaatacaacatttgtgcatatttttaaggaacaaaatatgtatgcatattttatggccaaggaaggatcacatgca 50426112  T
Q  315 aggtgctcggctcactg 331  Q
    | |||||  ||||||||    
T  50426113 atgtgctttgctcactg 50426129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 53590509 - 53590463
Alignment:
Q  166 atgcatttcttactatctcaatcttggtttggactcacactcatcgt 212  Q
    |||||||||||||||||| |||||| ||||||||||| |||||||||    
T  53590509 atgcatttcttactatctgaatcttagtttggactcatactcatcgt 53590463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 43445133 - 43445177
Alignment:
Q  166 atgcatttcttactatctcaatcttggtttggactcacactcatc 210  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||    
T  43445133 atgcatttcttactatcccaattttggtttggacccacactcatc 43445177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 7321199 - 7321232
Alignment:
Q  166 atgcatttcttactatctcaatcttggtttggac 199  Q
    |||||||| |||||||||||||||||||||||||    
T  7321199 atgcattttttactatctcaatcttggtttggac 7321232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 206 - 331
Target Start/End: Complemental strand, 39997595 - 39997470
Alignment:
Q  206 tcatcgtattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagta 305  Q
    ||||| ||||||||||||||| ||| |||||  ||| ||||||||||||||||| |||||||| || || ||||||||| |||||||||||||||||  |    
T  39997595 tcatcatattagagatgctttccatgggaatagaaacacaacattgatgcatgttcttagggagcaaaatatgtgtgcaaattttatggctaaggaatga 39997496  T
Q  306 tcacatacaaggtgctcggctcactg 331  Q
    |||||| |||||||||||||||||||    
T  39997495 tcacatccaaggtgctcggctcactg 39997470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 212 - 328
Target Start/End: Complemental strand, 16824192 - 16824076
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    |||||||||||||||||||   ||||||||||||||||||  |||||| ||||||||||| || |||||| || |||||||||||||| ||| |||||||    
T  16824192 tattagagatgctttacatgaaaatgaaaatacaacattggcgcatgttcttagggaacaaaatatgtgtacaaattttatggctaagaaaggatcacat 16824093  T
Q  312 acaaggtgctcggctca 328  Q
     |||||||||| |||||    
T  16824092 gcaaggtgctctgctca 16824076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 8266791 - 8266901
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||| ||||| ||||||| | ||||  |||||||||||| ||||||| ||||||||||| || |  |||||||||||||||||||| |||  |||||||    
T  8266791 tattaaagatgttttacatggaaatggtaatacaacattggtgcatgttcttagggaacaaaatacttgtgcagattttatggctaaagaaagatcacat 8266890  T
Q  312 acaaggtgctc 322  Q
     ||||||||||    
T  8266891 gcaaggtgctc 8266901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 328
Target Start/End: Original strand, 11075885 - 11076001
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||| |||||||||||||   |||| ||||||||||||| ||||||| | ||  ||||| || ||||||| || ||||||||||||||||| |||||||    
T  11075885 tattaaagatgctttacatgaaaatggaaatacaacattggtgcatgttcctaacgaacaaaatatgtgtgtaggttttatggctaaggaagaatcacat 11075984  T
Q  312 acaaggtgctcggctca 328  Q
     ||| || ||| |||||    
T  11075985 gcaaagtactctgctca 11076001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 327
Target Start/End: Original strand, 18565921 - 18566008
Alignment:
Q  240 aatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctc 327  Q
    |||||||||||| ||||||| ||||||||||| ||||| |||| ||||||||||| |||||||  |||| || ||| |||||| ||||    
T  18565921 aatacaacattggtgcatgttcttagggaacaaaacatatgtgtagattttatggttaaggaatgatcatatgcaaagtgctctgctc 18566008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 329
Target Start/End: Original strand, 2887592 - 2887710
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagg-gaacataacatgtgtgcagattttatggctaaggaagtatcaca 310  Q
    ||||||||||| |||| || | |||||||||||||||||| |||||||  | |||  |||| || ||||||| | |||||||||  ||||||| ||| ||    
T  2887592 tattagagatgatttatatggaaatgaaaatacaacattggtgcatgttttaaggaaaacaaaatatgtgtgtaaattttatggtcaaggaaggatctca 2887691  T
Q  311 tacaaggtgctcggctcac 329  Q
    | |||||||||| ||||||    
T  2887692 tgcaaggtgctctgctcac 2887710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 9427761 - 9427871
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||||| ||||||| | ||||  ||||||| ||||  |||||| ||||||||||| ||   || || |||||||| | ||||||||| |||||||    
T  9427761 tattagagatgttttacatggaaatggtaatacaagattggcgcatgttcttagggaacaaaattcgtatgtagattttacgactaaggaaggatcacat 9427860  T
Q  312 acaaggtgctc 322  Q
     ||||||||||    
T  9427861 gcaaggtgctc 9427871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 301
Target Start/End: Complemental strand, 3620969 - 3620880
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaagga 301  Q
    ||||||||||  ||||||| | ||||| || || |||||  ||||||| ||||| ||||| ||||||||| || ||||||||||||||||    
T  3620969 tattagagatattttacatggaaatgataacactacattagtgcatgttcttagagaacaaaacatgtgtacaaattttatggctaagga 3620880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 2887224 - 2887267
Alignment:
Q  166 atgcatttcttactatctcaatcttggtttggactcacactcat 209  Q
    |||||||| |||||||| |||||||||||||||| |||||||||    
T  2887224 atgcattttttactatcccaatcttggtttggacccacactcat 2887267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 15243518 - 15243637
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||||| |||||||   |||||||| ||||||||| ||||||| |||||||||||  ||||||||||| |||||||||||||||||| |||||||    
T  15243518 tattagagatgttttacatgaaaatgaaaaaacaacattggtgcatgttcttagggaacaatacatgtgtgcatattttatggctaaggaaggatcacat 15243617  T
Q  312 acaaggtgctcggctcactg 331  Q
     |||||||||| ||||||||    
T  15243618 gcaaggtgctctgctcactg 15243637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 212 - 327
Target Start/End: Complemental strand, 1758704 - 1758589
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||||| |||||||   |||| ||||||||||||||||||||| ||||||| ||| || || ||||||||||||||||||||||||  |||||||    
T  1758704 tattagagatgatttacatgaaaatggaaatacaacattgatgcatgttcttaggggacaaaatatatgtgcagattttatggctaaggaacgatcacat 1758605  T
Q  312 acaaggtgctcggctc 327  Q
     |||| ||||| ||||    
T  1758604 gcaagatgctctgctc 1758589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 12607975 - 12608074
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||||| ||||||| | |||| ||||||||||||| ||||||| | || |||||| || |||||||||||||||||||||||||||| |||||||    
T  12607975 tattagagatggtttacatggaaatggaaatacaacattggtgcatgttcataaggaacaaaatatgtgtgcagattttatggctaaggaaggatcacat 12608074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 215 - 330
Target Start/End: Original strand, 12563321 - 12563435
Alignment:
Q  215 tagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacataca 314  Q
    ||||||| |||||||| | |||||||||||||||||| |||||||  ||||| || | || ||||||||||||||||||| |||||||| ||||||| ||    
T  12563321 tagagattctttacatggaaatgaaaatacaacattggtgcatgtttttaggaaaaa-aatatgtgtgcagattttatggttaaggaaggatcacatgca 12563419  T
Q  315 aggtgctcggctcact 330  Q
    |||||||  |||||||    
T  12563420 aggtgctatgctcact 12563435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 239 - 319
Target Start/End: Original strand, 12597097 - 12597177
Alignment:
Q  239 aaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtg 319  Q
    ||||| ||| ||| ||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||||| |||||||    
T  12597097 aaatataactttggtgcatgttcttagggaacaaaatatgtgtgcagattttatggctaaggaaggatcacattcaaggtg 12597177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 330
Target Start/End: Original strand, 36128147 - 36128261
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    |||||||||| || ||||||  |||||||||| ||||||| |||||||     ||||||| || ||||||||| |||||||||||||||||  |||||||    
T  36128147 tattagagatcctatacataaaaatgaaaatataacattggtgcatgtt----gggaacaaaatatgtgtgcaaattttatggctaaggaaagatcacat 36128242  T
Q  312 acaaggtgctcggctcact 330  Q
     |||||||||| |||||||    
T  36128243 gcaaggtgctctgctcact 36128261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 302
Target Start/End: Complemental strand, 28932313 - 28932223
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaa 302  Q
    ||||| ||||||| ||||| | | || ||||||||||||| ||||||| ||||| ||||| || ||||||| |||||||||||||||||||    
T  28932313 tattaaagatgctctacatggaagtggaaatacaacattggtgcatgttcttagagaacaaaatatgtgtgtagattttatggctaaggaa 28932223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 15243150 - 15243195
Alignment:
Q  166 atgcatttcttactatctcaatcttggtttggactcacactcatcg 211  Q
    |||||| |||||||||| ||||| |||||||||| |||||||||||    
T  15243150 atgcatctcttactatcccaatcctggtttggacccacactcatcg 15243195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 23589609 - 23589654
Alignment:
Q  166 atgcatttcttactatctcaatcttggtttggactcacactcatcg 211  Q
    ||||||||||||| ||| ||||| |||||||||| |||||||||||    
T  23589609 atgcatttcttaccatcccaatcctggtttggacccacactcatcg 23589654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 1759063 - 1759019
Alignment:
Q  166 atgcatttcttactatctcaatcttggtttggactcacactcatc 210  Q
    ||||||||||||||||  |||||||||||||||| || |||||||    
T  1759063 atgcatttcttactattccaatcttggtttggacccatactcatc 1759019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 12562951 - 12562995
Alignment:
Q  166 atgcatttcttactatctcaatcttggtttggactcacactcatc 210  Q
    |||||||||||| |||| ||||||| |||||||| ||||||||||    
T  12562951 atgcatttcttattatcccaatcttcgtttggacccacactcatc 12562995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 54849 - 54730
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||||| ||||||| | ||||  |||||||||||| |||||||  |||||||||| || ||||||||||| |||||||||||||||| |||||||    
T  54849 tattagagatgttttacatggaaatggtaatacaacattgttgcatgtttttagggaacaaaatatgtgtgcagactttatggctaaggaagaatcacat 54750  T
Q  312 acaaggtgctcggctcactg 331  Q
     |||||||||| ||||||||    
T  54749 gcaaggtgctctgctcactg 54730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 44440461 - 44440571
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||||| |||||||   |||||||||||||||||| ||||||| ||||||||||| || ||||||||||||||||||| |||||||| |||||||    
T  44440461 tattagagatgttttacatgaaaatgaaaatacaacattggtgcatgttcttagggaacaaaatatgtgtgcagattttatggttaaggaaggatcacat 44440560  T
Q  312 acaaggtgctc 322  Q
     |||| |||||    
T  44440561 gcaagttgctc 44440571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 4653720 - 4653839
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||| ||||||| ||||| | |||| |||||| | |||| | ||||| || |  ||||| || ||||||||| |||||||||||||||||| |||||||    
T  4653720 tattaaagatgctctacatggaaatggaaatactatattggtacatgttctcatagaacaaaatatgtgtgcaaattttatggctaaggaaggatcacat 4653819  T
Q  312 acaaggtgctcggctcactg 331  Q
    ||||||||||| ||||||||    
T  4653820 acaaggtgctctgctcactg 4653839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 8271212 - 8271091
Alignment:
Q  212 tattagagatgctttacataggaatgaaaataca--acattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcac 309  Q
    |||||||||||||||||||   |||| |||||||  ||| || | ||||| ||||||||||| || |||| ||||||||||||||||||||||| |||||    
T  8271212 tattagagatgctttacatgaaaatggaaatacacaacagtggttcatgttcttagggaacaaaatatgtatgcagattttatggctaaggaagaatcac 8271113  T
Q  310 atacaaggtgctcggctcactg 331  Q
    || |||| ||||  ||||||||    
T  8271112 atgcaagatgctatgctcactg 8271091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 45036141 - 45036059
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatgg 294  Q
    ||||||||||| |||||||   |||||||||||||||||  ||||||| ||||||||||| |||||||||||| |||||||||    
T  45036141 tattagagatgttttacatgaaaatgaaaatacaacattagtgcatgttcttagggaacaaaacatgtgtgcaaattttatgg 45036059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 322
Target Start/End: Original strand, 22540123 - 22540206
Alignment:
Q  239 aaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctc 322  Q
    ||||||||||||| ||||||| ||  | ||||| || || ||||||||||||||| |||||||||  |||||||||||||||||    
T  22540123 aaatacaacattggtgcatgttctcggagaacaaaatatatgtgcagattttatgactaaggaagagtcacatacaaggtgctc 22540206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 317
Target Start/End: Complemental strand, 6571117 - 6571012
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||||||||| ||| | |||  |||||||| |||  | ||||| ||||||||||| || | |||||||||||||||| ||||||||| ||| |||    
T  6571117 tattagagatgctttgcatggaaatagaaatacaatattagtacatgttcttagggaacaaaatacgtgtgcagattttatgactaaggaaggatcgcat 6571018  T
Q  312 acaagg 317  Q
     |||||    
T  6571017 gcaagg 6571012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 4653350 - 4653395
Alignment:
Q  166 atgcatttcttactatctcaatcttggtttggactcacactcatcg 211  Q
    ||||||||||||||||| ||||| |||||||||| |||||||||||    
T  4653350 atgcatttcttactatcccaatcatggtttggacccacactcatcg 4653395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 45041793 - 45041761
Alignment:
Q  262 ttagggaacataacatgtgtgcagattttatgg 294  Q
    |||||||||| ||||||||||||||||||||||    
T  45041793 ttagggaacaaaacatgtgtgcagattttatgg 45041761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 27046241 - 27046122
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||||| ||||||| | |||||||||||||||||| ||||||| |||| |||||| || | ||| ||| ||||| || ||||||||| |||||||    
T  27046241 tattagagatgttttacatggaaatgaaaatacaacattggtgcatgttcttatggaacaaaatacgtgggcaaattttgtgactaaggaaggatcacat 27046142  T
Q  312 acaaggtgctcggctcactg 331  Q
     |||||||||| ||||||||    
T  27046141 gcaaggtgctctgctcactg 27046122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 12501706 - 12501825
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||| | |||||||   |||| ||||||||||||| ||||||| ||||||  ||| ||||||||||||||||||||||||||||| | ||  |||    
T  12501706 tattagagacgttttacatgaaaatggaaatacaacattggtgcatgttcttaggttacaaaacatgtgtgcagattttatggctaaggacggattgcat 12501805  T
Q  312 acaaggtgctcggctcactg 331  Q
     |||||||||| ||||||||    
T  12501806 gcaaggtgctctgctcactg 12501825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 10329055 - 10328937
Alignment:
Q  213 attagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacata 312  Q
    |||||||||||||||||| | ||||  || ||||||||| ||||||| ||||||||||| || ||||||||| ||||||| |  ||||||| |||||||     
T  10329055 attagagatgctttacatggaaatgggaacacaacattggtgcatgttcttagggaacaaaatatgtgtgcaaattttatagtgaaggaaggatcacatg 10328956  T
Q  313 caaggtgctcggctcactg 331  Q
    ||| |||||| ||||||||    
T  10328955 caaagtgctctgctcactg 10328937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 321
Target Start/End: Complemental strand, 5464648 - 5464539
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||||| ||||||| | |||| ||||| ||||||| ||||| | ||| ||||||| || |  ||||||||||||||||||||||||| |||||||    
T  5464648 tattagagatgttttacatggaaatggaaatagaacattggtgcatattcttggggaacaaaatacatgtgcagattttatggctaaggaaggatcacat 5464549  T
Q  312 acaaggtgct 321  Q
     |||||||||    
T  5464548 gcaaggtgct 5464539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 12527340 - 12527450
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||| | |||||||   |||| ||||||||||||| ||||||| ||||||  ||| ||||||||||||||||||||||||||||| | ||  |||    
T  12527340 tattagagacgttttacatgaaaatggaaatacaacattggtgcatgttcttaggttacaaaacatgtgtgcagattttatggctaaggacggattgcat 12527439  T
Q  312 acaaggtgctc 322  Q
     ||||||||||    
T  12527440 gcaaggtgctc 12527450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 331
Target Start/End: Complemental strand, 5949635 - 5949538
Alignment:
Q  234 aatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctcactg 331  Q
    |||| ||||||||||||| ||||||| ||||||||||| ||||||||||  ||||||| ||||||| ||| ||||||| |||||| |||  |||||||    
T  5949635 aatggaaatacaacattggtgcatgttcttagggaacaaaacatgtgtgttgattttacggctaagaaaggatcacatgcaaggtactctactcactg 5949538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 41029397 - 41029472
Alignment:
Q  253 tgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctcggctca 328  Q
    ||||||| ||| | ||||| || ||||||| ||||||||||||||||||||  ||||||||||||||||| |||||    
T  41029397 tgcatgttcttcgcgaacaaaatatgtgtgtagattttatggctaaggaagggtcacatacaaggtgctctgctca 41029472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 318
Target Start/End: Complemental strand, 25828485 - 25828380
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||| ||||||| |||||   |||| ||||||||||||| |||||||  ||| | |||  || |||||||||||||||||| ||||||||| |||||||    
T  25828485 tattaaagatgctctacatgaaaatggaaatacaacattggtgcatgttattacg-aacgaaatatgtgtgcagattttatgtctaaggaaggatcacat 25828387  T
Q  312 acaaggt 318  Q
     ||||||    
T  25828386 gcaaggt 25828380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 31443626 - 31443676
Alignment:
Q  252 atgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaa 302  Q
    |||||||| ||||||||| | || ||||||| |||||||||||||||||||    
T  31443626 atgcatgttcttagggaataaaatatgtgtgtagattttatggctaaggaa 31443676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 12501645 - 12501685
Alignment:
Q  166 atgcatttcttactatctcaatcttggtttggactcacact 206  Q
    ||||||||||||||||| ||||| |||||||||| ||||||    
T  12501645 atgcatttcttactatcccaatcctggtttggacccacact 12501685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 12527279 - 12527319
Alignment:
Q  166 atgcatttcttactatctcaatcttggtttggactcacact 206  Q
    ||||||||||||||||| ||||| |||||||||| ||||||    
T  12527279 atgcatttcttactatcccaatcctggtttggacccacact 12527319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 13278638 - 13278682
Alignment:
Q  287 ttttatggctaaggaagtatcacatacaaggtgctcggctcactg 331  Q
    ||||||||||||||||| || |||| |||||||||| ||||||||    
T  13278638 ttttatggctaaggaaggatgacatgcaaggtgctctgctcactg 13278682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 213 - 332
Target Start/End: Original strand, 50945993 - 50946112
Alignment:
Q  213 attagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacata 312  Q
    |||||||||| |||||||   ||||||||||||||||||||||||||  |||| ||||| || ||| ||| ||||||||| |||||||||| |||||||     
T  50945993 attagagatgttttacatgaaaatgaaaatacaacattgatgcatgtttttagagaacaaaatatgcgtgtagattttattgctaaggaaggatcacatg 50946092  T
Q  313 caaggtgctcggctcactga 332  Q
    |||| ||||| |||||||||    
T  50946093 caagatgctctgctcactga 50946112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 212 - 329
Target Start/End: Original strand, 11371634 - 11371750
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||||  ||||||| | |||| ||||||||||||| ||||||| |||||| |||| || |||||||||||||||||||||||||||  |||| ||    
T  11371634 tattagagattatttacatggaaatggaaatacaacattggtgcatgttcttagg-aacaaaatatgtgtgcagattttatggctaaggaatgatcaaat 11371732  T
Q  312 acaaggtgctcggctcac 329  Q
     |||||||||| ||||||    
T  11371733 gcaaggtgctctgctcac 11371750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 319
Target Start/End: Complemental strand, 41940635 - 41940530
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||||| ||||||| | ||||  |||||||||||||||||||| ||||||||||  || || |||||| |||||||||||||||||| |||||||    
T  41940635 tattagagatgttttacatggaaatggtaatacaacattgatgcatgttcttagggaac--aaaatatgtgcaaattttatggctaaggaaggatcacat 41940538  T
Q  312 acaaggtg 319  Q
     |||||||    
T  41940537 gcaaggtg 41940530  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 330
Target Start/End: Original strand, 25969778 - 25969893
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||||| ||||||| | |||||||||||||||||| ||||||| |||| |||||| || ||||||||| ||||||| |||   |||| |||||||    
T  25969778 tattagagatgttttacatggaaatgaaaatacaacattggtgcatgttcttaaggaacaaaatatgtgtgcatattttatagct---gaagaatcacat 25969874  T
Q  312 acaaggtgctcggctcact 330  Q
     ||||||| || |||||||    
T  25969875 gcaaggtgttctgctcact 25969893  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 332
Target Start/End: Complemental strand, 47924360 - 47924240
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    |||| |||||| |||||||   |||| ||||| ||||||| ||||| | || || ||||| ||||||||||| ||||||||||||||| ||| |||| ||    
T  47924360 tattcgagatgttttacatgaaaatggaaatataacattggtgcatattctcagcgaacaaaacatgtgtgctgattttatggctaagtaaggatcatat 47924261  T
Q  312 acaaggtgctcggctcactga 332  Q
     |||||||||| |||||||||    
T  47924260 gcaaggtgctctgctcactga 47924240  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 27184855 - 27184736
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||||| |||||||   ||||  ||||||||||| |||||||| | ||||||||| || |||| || | |||||||||||||||||| ||||| |    
T  27184855 tattagagatgttttacatgaaaatggtaatacaacattaatgcatgttcatagggaacaaaatatgtatgtatattttatggctaaggaaggatcacgt 27184756  T
Q  312 acaaggtgctcggctcactg 331  Q
     ||| |||||| ||||||||    
T  27184755 gcaatgtgctctgctcactg 27184736  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 40656230 - 40656116
Alignment:
Q  216 agagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaa 315  Q
    ||||||| ||||||| | |||| |||||| |||||| ||||||| || || ||||| || |||||||||||||||||| ||||||||| |||| || | |    
T  40656230 agagatgttttacatggaaatggaaatacgacattggtgcatgttctaagagaacaaaatatgtgtgcagattttatgactaaggaagaatcatatgcga 40656131  T
Q  316 ggtgctcggctcact 330  Q
    ||||||  |||||||    
T  40656130 ggtgctatgctcact 40656116  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 54259406 - 54259495
Alignment:
Q  209 tcgtattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaa 298  Q
    ||||| |||||||| ||||||| | |||| |||||||||||||  |||||| ||||||||||| || ||||||||| |||| ||||||||    
T  54259406 tcgtaatagagatgatttacatggaaatggaaatacaacattggagcatgttcttagggaacaaaatatgtgtgcaaatttcatggctaa 54259495  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 6450497 - 6450607
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||||| |||||||   |||| |||||||||| || | ||||| ||||||||||| || ||||||| ||||||||||| ||||||   |||||||    
T  6450497 tattagagatgatttacatgaaaatggaaatacaacagtggttcatgttcttagggaacaaaatatgtgtgtagattttatggttaaggataaatcacat 6450596  T
Q  312 acaaggtgctc 322  Q
     |||| |||||    
T  6450597 gcaagatgctc 6450607  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 47924729 - 47924683
Alignment:
Q  166 atgcatttcttactatctcaatcttggtttggactcacactcatcgt 212  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  47924729 atgcatttcttactatcccaatcttggtttggacccacactcatcgt 47924683  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 23397636 - 23397572
Alignment:
Q  244 caacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatca 308  Q
    |||||||| ||||||| ||||||||||| ||||| |||||| ||||||||||||| |||| ||||    
T  23397636 caacattggtgcatgttcttagggaacaaaacatatgtgcaaattttatggctaatgaagaatca 23397572  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 41940995 - 41940954
Alignment:
Q  166 atgcatttcttactatctcaatcttggtttggactcacactc 207  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  41940995 atgcatttcttactatcccaatcttggtttggacccacactc 41940954  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 2443355 - 2443474
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||||| |||||||   ||||  ||||||||||| |||||||| | ||||||||| || |||| || | |||||||||||||||||| ||||| |    
T  2443355 tattagagatgttttacatgaaaatggtaatacaacattaatgcatgttcatagggaacaaaatatgtatgtatattttatggctaaggaaggatcacgt 2443454  T
Q  312 acaaggtgctcggctcactg 331  Q
     ||| |||||| ||||||||    
T  2443455 gcaatgtgctctgctcactg 2443474  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 29047284 - 29047387
Alignment:
Q  212 tattagagatgctttacataggaatgaaaatacaacattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaagtatcacat 311  Q
    ||||||||||||||||||| | ||||  |||| ||||||  | ||| | ||||||||||| || |||||||||||||||||||||| | ||| |||||||    
T  29047284 tattagagatgctttacatggaaatggtaataaaacattagtacattt-cttagggaacaaaatatgtgtgcagattttatggctatgtaaggatcacat 29047382  T
Q  312 acaag 316  Q
     ||||    
T  29047383 gcaag 29047387  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 38697504 - 38697446
Alignment:
Q  264 agggaacataacatgtgtgcagattttatggctaaggaagtatcacatacaaggtgctc 322  Q
    |||||||| || |||| |||||||||||| |||||||||| ||||||| |||| |||||    
T  38697504 agggaacaaaatatgtctgcagattttatagctaaggaaggatcacatgcaagatgctc 38697446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 1362525 - 1362581
Alignment:
Q  246 acattgatgcatgtacttagggaacataacatgtgtgcagattttatggctaaggaa 302  Q
    |||||||| ||||| ||||| ||||| || |||| || |||||||||||||||||||    
T  1362525 acattgatacatgttcttagtgaacaaaatatgtatgtagattttatggctaaggaa 1362581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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