View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4418_low_26 (Length: 320)
Name: NF4418_low_26
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 5 - 306
Target Start/End: Complemental strand, 49230876 - 49230576
Alignment:
| Q |
5 |
gagcagcacagatgggaaagttgattggtcaatgcaaacaagatcgcaatccattannnnnnnncttccaatataaaaatcacaatttgtgaacatttat |
104 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
49230876 |
gagctgcacaaatgggaaagttgattggtcaatgcaaacaagatcgcaatccatt-ttttttttcttccaatataaaaatcacaatttgtgaacatttat |
49230778 |
T |
|
| Q |
105 |
gatcgtgagctgtagtgaaatgcacatagtcgatcatattatattttaaaatatttaaaatctgtatattgaaatttagatagttggactttgatgtaac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49230777 |
gatcgtgagctgtagtgaaatgcacatagtcgatcatattatattttaaattatttaaaatctgtatattgaaatttcgatagttggactttgatgtaac |
49230678 |
T |
|
| Q |
205 |
catgtagaccactcaaatcccacaactaccatgcattgatgcataggcaacaacagaattaacctgtgttgctatttatcttggatattttgtgttgaaa |
304 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
49230677 |
catgtagacaactcaaatcccacaactaccatgcattgatgcgtaggcaacaacagaattaacttgtgttgctatttatcttggatattttgtgttgaaa |
49230578 |
T |
|
| Q |
305 |
tt |
306 |
Q |
| |
|
|| |
|
|
| T |
49230577 |
tt |
49230576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1892 times since January 2019
Visitors: 8639