View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_low_28 (Length: 282)
Name: NF4418_low_28
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 33718114 - 33718385
Alignment:
| Q |
1 |
aatgactatgcagtttgatgatgttgtgtacaaaatcaaagccaaaaaaggaggactatttaagaagaacatagaagtagaaggaaaaacaatactaaaa |
100 |
Q |
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| T |
33718114 |
aatgactatgcagtttgatgatgttgtgtacaaaatcaaagccaaaaaaggaggactatttaagaagaacatagaagtagaagaaaaaacaatactaaaa |
33718213 |
T |
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| Q |
101 |
ggagtaacaggaattgtccaaccaggtgaaatgctagcaatgttaggtccatcaggtagtggaaaaacaacattattaacagcattaggaggaagacttg |
200 |
Q |
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| T |
33718214 |
ggagtaacaggaattgtccaaccaggtgaaatgctagcaatgttaggtccatcaggtagtggaaaaacaacattattaacagcattaggaggaagacttg |
33718313 |
T |
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| Q |
201 |
gtggaaaactttatggatccataacatacaatgaaaaacctttttcaaatgttataaaaagaaacacaggtt |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33718314 |
gtggaaaactttatggatccataacatacaatgaaaaacctttttcaaatgttataaaaagaaacacaggtt |
33718385 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 20687658 - 20687748
Alignment:
| Q |
143 |
ttaggtccatcaggtagtggaaaaacaacattattaacagcattaggaggaagacttggtggaaaactttatggatccataacatacaatg |
233 |
Q |
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| T |
20687658 |
ttaggtccatctggaagtggtaaaacaactctcctaacagcactaggaggaagactaggaggaaaactctctggaacaataacttacaatg |
20687748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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