View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_low_31 (Length: 258)
Name: NF4418_low_31
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 41650112 - 41649963
Alignment:
| Q |
1 |
aactcagttcaggattctcatgaatttttctccttatatcaaccatgaaatcaaaaacttgaggttccttggataaatttagaaagtttgggattgataa |
100 |
Q |
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| T |
41650112 |
aactcagttcaggattctcatgaatttttctccttatatcaaccatgaaatcaaaaacttgaggttccttggataaatttagaaagtttgggattgataa |
41650013 |
T |
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| Q |
101 |
gtggtcatttgaagtggtggaggaagaatctgagaagattggtgttgcag |
150 |
Q |
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| T |
41650012 |
gtggtcatttgaagtggtggaggaggaatctgagaagattggtgttgcag |
41649963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 43228047 - 43228199
Alignment:
| Q |
1 |
aactcagttcaggattctcatgaatttttctccttatatcaaccatgaaatcaaaaacttgaggttccttggataaatttagaaagtttgggattgataa |
100 |
Q |
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| T |
43228047 |
aactcagttcaggattctcatgaatttttctccttatagaaaccatccagtcaaaaactttaggctctttagctaaatctagaaagtttgggattgataa |
43228146 |
T |
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| Q |
101 |
gtggtcatttgaagtggt---ggaggaagaatctgagaagattggtgttgcag |
150 |
Q |
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| T |
43228147 |
gtggtcatttgaagtggtggaggaggaggaatctgagaagattgatgttgcag |
43228199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 43206537 - 43206683
Alignment:
| Q |
1 |
aactcagttcaggattctcatgaatttttctccttatatcaaccatgaaatcaaaaacttgaggttccttggataaatttagaaagtttgggattgataa |
100 |
Q |
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| T |
43206537 |
aactcagttcaggattctcatgaatttttctccttatagaaaccatccagtcaaaaactttaggctctttagctaaatctagaaagtttgggattgataa |
43206636 |
T |
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| Q |
101 |
gtggtcatttgaagtggtggaggaagaatctgagaagattggtgttgcag |
150 |
Q |
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| T |
43206637 |
gtggtcatttgaagtggaaga-gaag--tctgagaagactggtgttgcag |
43206683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 43213518 - 43213659
Alignment:
| Q |
8 |
ttcaggattctcatgaatttttctccttatatcaaccatgaaatcaaaaacttgaggttccttggataaatttagaaagtttgggattgataagtggtca |
107 |
Q |
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| T |
43213518 |
ttcaggattctcatgaatcttcctccttatatcaaccatccaatcaaaaacttgaggctctttggctaattccagaagctttggaattgctaagtggtct |
43213617 |
T |
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| Q |
108 |
tttgaagtggtggaggaagaatctgagaagattggtgttgca |
149 |
Q |
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| T |
43213618 |
tttgaattagtggaggaggaatctgagaaaataggtgttgca |
43213659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 41654647 - 41654581
Alignment:
| Q |
6 |
agttcaggattctcatgaatttttctccttatatcaaccatgaaatcaaaaacttgaggttccttgg |
72 |
Q |
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|||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41654647 |
agttcaggattctcatgaatcttcctccttatatcaaccatccaatcaaaaacttgaggttccttgg |
41654581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 43224251 - 43224317
Alignment:
| Q |
6 |
agttcaggattctcatgaatttttctccttatatcaaccatgaaatcaaaaacttgaggttccttgg |
72 |
Q |
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| T |
43224251 |
agttcaggattctcatgaatcttcctccttatatcaaccatccaatcaaaaacttgaggttccttgg |
43224317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 244
Target Start/End: Complemental strand, 41649898 - 41649869
Alignment:
| Q |
215 |
catgcattcaaagtgttaaggtgggaaatg |
244 |
Q |
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| T |
41649898 |
catgcattcaaagtgttaaggtgggaaatg |
41649869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 150
Target Start/End: Original strand, 43224351 - 43224383
Alignment:
| Q |
118 |
tggaggaagaatctgagaagattggtgttgcag |
150 |
Q |
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| T |
43224351 |
tggaggaagaatctgagaagattggtgtagcag |
43224383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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