View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_low_36 (Length: 246)
Name: NF4418_low_36
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 10877905 - 10878121
Alignment:
| Q |
16 |
cttctataaatgatttgggctgtatagtgcgacaatcgaaagatcaaattaaataatataagtgaaacatttttaagtaactctaaaagaagtcagatcg |
115 |
Q |
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| T |
10877905 |
cttctataaatgatttgggctgtatagtgcgacaatcgaaagatcaaattaaataatataagtgaaacatttttaagtaactctaaaagaagtcagatcg |
10878004 |
T |
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| Q |
116 |
tctgcaccctttcgtgcagatgtnnnnnnncaaaattaaattaaattaatataccatcatctaaagggaaccacaaaatcaactgacgttaaatatccat |
215 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10878005 |
tctgcaccctttcgtgcagatgtaaaaaaacaaaattaaattaaattaatataccatcatctaaagggaaccacaaaatcaactgacgttaaatatccat |
10878104 |
T |
|
| Q |
216 |
ttttgttcggatatttt |
232 |
Q |
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||||||||||||||||| |
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| T |
10878105 |
ttttgttcggatatttt |
10878121 |
T |
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