View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4418_low_39 (Length: 237)

Name: NF4418_low_39
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4418_low_39
NF4418_low_39
[»] chr2 (2 HSPs)
chr2 (8-230)||(1230855-1231074)
chr2 (139-205)||(36843431-36843497)
[»] chr4 (8 HSPs)
chr4 (101-216)||(9435359-9435472)
chr4 (138-216)||(41720804-41720882)
chr4 (92-203)||(20644245-20644353)
chr4 (105-184)||(40792410-40792486)
chr4 (146-216)||(43189817-43189887)
chr4 (163-203)||(7001828-7001868)
chr4 (138-174)||(7381280-7381316)
chr4 (98-216)||(31445886-31446000)
[»] chr3 (2 HSPs)
chr3 (97-216)||(44000220-44000336)
chr3 (102-212)||(33364793-33364900)
[»] chr8 (2 HSPs)
chr8 (139-204)||(16595219-16595284)
chr8 (139-212)||(4599624-4599698)
[»] chr1 (5 HSPs)
chr1 (138-212)||(30798820-30798894)
chr1 (97-214)||(2761647-2761760)
chr1 (141-204)||(4895372-4895435)
chr1 (139-212)||(47092972-47093045)
chr1 (139-204)||(52030335-52030400)
[»] chr6 (5 HSPs)
chr6 (139-216)||(32614032-32614109)
chr6 (139-215)||(29424661-29424737)
chr6 (139-216)||(27824744-27824821)
chr6 (161-216)||(10552733-10552790)
chr6 (187-216)||(2122698-2122727)
[»] scaffold0062 (1 HSPs)
scaffold0062 (139-216)||(3689-3766)
[»] chr7 (4 HSPs)
chr7 (152-216)||(3359910-3359974)
chr7 (139-202)||(29992751-29992813)
chr7 (139-207)||(21408682-21408749)
chr7 (144-216)||(29455908-29455979)
[»] chr5 (3 HSPs)
chr5 (96-178)||(26180315-26180395)
chr5 (97-212)||(31880098-31880210)
chr5 (139-199)||(17031132-17031192)
[»] scaffold0155 (1 HSPs)
scaffold0155 (144-216)||(33610-33682)


Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 1231074 - 1230855
Alignment:
Q  8 ttgtacaacgatttgtaaaactgttttcgagatagaataaagaataaacaggaggaaaggaatatgataaaaactannnnnnnngtctttcactaaacca 107  Q
    ||||||||||||||||||||||||||| || | | |||||||||||||  |||||||||||||| || ||||||||        ||||||||||||||||    
T  1231074 ttgtacaacgatttgtaaaactgtttttgaaacaaaataaagaataaatgggaggaaaggaataggacaaaaactattctttttgtctttcactaaacca 1230975  T
Q  108 catctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataa 207  Q
    |||||||||||||||||| ||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1230974 catctcaactttttgtctcatgtacaaattac---ctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataa 1230878  T
Q  208 taaaagttttattctgatgatgt 230  Q
    |||||||||||||||||||||||    
T  1230877 taaaagttttattctgatgatgt 1230855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 36843497 - 36843431
Alignment:
Q  139 ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatat 205  Q
    ||||||||||||||||| |||||| ||||| ||||| ||| ||||||||| |||||||||| |||||    
T  36843497 ttatctaaaatacaaaactatcttattgtctaccaaaaattgtatatgacaaaaaattatttaatat 36843431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 9435472 - 9435359
Alignment:
Q  101 taaaccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattc 200  Q
    ||||||||||| |||||||||| |  || |||||| |  ||||||||||||||||||| ||||||||| ||||| ||| ||||| |||||||||| ||||    
T  9435472 taaaccacatcacaactttttgaccaatatacaaagt--tatctaaaatacaaaaatagctttttgtctaccaaaaatggtataagaccaaaaataattc 9435375  T
Q  201 aatataataaaagttt 216  Q
    ||||| ||||||||||    
T  9435374 aatatcataaaagttt 9435359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 41720882 - 41720804
Alignment:
Q  138 attatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagttt 216  Q
    |||||||||||||||||||||  ||||||||||| || ||||||||| ||| ||||||||| |||||| || |||||||    
T  41720882 attatctaaaatacaaaaataattttttgtccacaaaaaatagtataagactaaaaattatacaatatcattaaagttt 41720804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 20644245 - 20644353
Alignment:
Q  92 gtctttcactaaaccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaa 191  Q
    |||| ||||||||||||||| || ||| ||||||  ||||||| ||||   |||| |||||||||||  ||||||| |||||| ||| |||||  | |||    
T  20644245 gtctctcactaaaccacatcccagcttcttgtctcgtgtacaagttat---ctaagatacaaaaatagatttttgtacaccaaaaatcgtataaaatcaa 20644341  T
Q  192 aaattattcaat 203  Q
    ||||||||||||    
T  20644342 aaattattcaat 20644353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 40792486 - 40792410
Alignment:
Q  105 ccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtata 184  Q
    ||||||| ||||||||||| | |||||||| ||||   |||||||||||||||| ||||||||||| ||| ||| |||||    
T  40792486 ccacatcacaactttttgtttcatgtacaagttat---ctaaaatacaaaaatagctttttgtccatcaaaaatcgtata 40792410  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 43189817 - 43189887
Alignment:
Q  146 aaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagttt 216  Q
    ||||||||||||| ||| |||||||| ||  || ||||| ||| |||||||||||||||  ||||||||||    
T  43189817 aaatacaaaaataacttattgtccactaaatatcgtataagacaaaaaattattcaataccataaaagttt 43189887  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 7001868 - 7001828
Alignment:
Q  163 tttgtccaccaacaatagtatatgaccaaaaattattcaat 203  Q
    |||||||||||| ||| ||||| ||||||||||||||||||    
T  7001868 tttgtccaccaaaaatcgtataagaccaaaaattattcaat 7001828  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 7381316 - 7381280
Alignment:
Q  138 attatctaaaatacaaaaatatctttttgtccaccaa 174  Q
    |||||||||||||||||||||  ||||||||||||||    
T  7381316 attatctaaaatacaaaaatagttttttgtccaccaa 7381280  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 216
Target Start/End: Original strand, 31445886 - 31446000
Alignment:
Q  98 cactaaaccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaatta 197  Q
    |||||||| ||||| |||||||||| |  | ||||||||||   ||||||||||||||||| |||||||| ||| || ||| ||| | ||  ||||||||    
T  31445886 cactaaacaacatcacaactttttgccacacgtacaaatta---tctaaaatacaaaaataactttttgttcacaaaaaatcgtacaaga-taaaaatta 31445981  T
Q  198 ttcaatataataaaagttt 216  Q
    | |||||  ||||||||||    
T  31445982 tccaataccataaaagttt 31446000  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 97 - 216
Target Start/End: Complemental strand, 44000336 - 44000220
Alignment:
Q  97 tcactaaaccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaatt 196  Q
    ||||||||||||||| ||| ||||||||  | ||||||    |||||| |||||||||||||  |||||||||||||| ||| ||||| |||||||||||    
T  44000336 tcactaaaccacatcacaattttttgtcccacgtacaa---gttatctgaaatacaaaaatagttttttgtccaccaaaaatcgtataagaccaaaaatt 44000240  T
Q  197 attcaatataataaaagttt 216  Q
    ||||||||  ||||||||||    
T  44000239 attcaataccataaaagttt 44000220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 212
Target Start/End: Original strand, 33364793 - 33364900
Alignment:
Q  102 aaaccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattca 201  Q
    |||||||||| ||||||||||||| | |||||| || |   ||||||||  |||||| | |||||||| |||| ||| |||||  || ||||||||||||    
T  33364793 aaaccacatcacaactttttgtctcacgtacaagttgt---ctaaaatatcaaaatagcattttgtcccccaaaaatcgtataaaacaaaaaattattca 33364889  T
Q  202 atataataaaa 212  Q
    || | ||||||    
T  33364890 atgtcataaaa 33364900  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 16595219 - 16595284
Alignment:
Q  139 ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaata 204  Q
    |||||||||||||||||||| |||||||| |||||| ||| ||||| |||||||||||||||||||    
T  16595219 ttatctaaaatacaaaaatagctttttgttcaccaaaaatcgtataagaccaaaaattattcaata 16595284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 4599698 - 4599624
Alignment:
Q  139 ttatctaaaatacaaaaa-tatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaa 212  Q
    |||||||||||||||||| || ||||||||| ||||| |||  |||| ||  ||||||||||||||| |||||||    
T  4599698 ttatctaaaatacaaaaaataactttttgtctaccaaaaattatataggataaaaaattattcaatacaataaaa 4599624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 212
Target Start/End: Original strand, 30798820 - 30798894
Alignment:
Q  138 attatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaa 212  Q
    |||||||||||||| ||||||  || ||||||||||| ||| ||||| |||||||||||||||||||| ||||||    
T  30798820 attatctaaaataccaaaatagtttgttgtccaccaaaaatcgtataagaccaaaaattattcaatatcataaaa 30798894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 2761647 - 2761760
Alignment:
Q  97 tcactaaaccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaatt 196  Q
    ||||||||||||| | ||| ||||||||| | ||||||   |||||||||||||||||||||  ||||||| || ||| |||  ||||  ||||||||||    
T  2761647 tcactaaaccacaacacaattttttgtctcaagtacaa---attatctaaaatacaaaaatagatttttgt-caacaaaaatcatataaaaccaaaaatt 2761742  T
Q  197 attcaatataataaaagt 214  Q
    ||||||||  ||||||||    
T  2761743 attcaatactataaaagt 2761760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 4895435 - 4895372
Alignment:
Q  141 atctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaata 204  Q
    ||||||||||||||||||  ||||||| |||||| ||| ||||| ||| |||| ||||||||||    
T  4895435 atctaaaatacaaaaataattttttgttcaccaaaaatcgtataagactaaaacttattcaata 4895372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 47092972 - 47093045
Alignment:
Q  139 ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaa 212  Q
    |||| |||||||||||||||  ||||||| ||| || ||| ||||| | | |||||||||||||||| ||||||    
T  47092972 ttatttaaaatacaaaaataattttttgttcacaaaaaatcgtataaggcaaaaaattattcaatattataaaa 47093045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 52030335 - 52030400
Alignment:
Q  139 ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaata 204  Q
    ||||||||||||||||||||  ||||||||||| || |||  ||||| || |||||| ||||||||    
T  52030335 ttatctaaaatacaaaaatagttttttgtccacaaaaaatcatatataacaaaaaatgattcaata 52030400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 32614032 - 32614109
Alignment:
Q  139 ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagttt 216  Q
    |||||||||||| ||||||| ||||||||||||||| ||| ||||| |||||||||||||  ||||  ||||||||||    
T  32614032 ttatctaaaatataaaaataactttttgtccaccaaaaatcgtataagaccaaaaattatataataccataaaagttt 32614109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 29424661 - 29424737
Alignment:
Q  139 ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagtt 215  Q
    ||||||||||||||||||||  |||||||||||||| ||  ||| | |||||||||||||||||||  |||||||||    
T  29424661 ttatctaaaatacaaaaatagttttttgtccaccaaaaaacgtacaagaccaaaaattattcaataccataaaagtt 29424737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 27824744 - 27824821
Alignment:
Q  139 ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagttt 216  Q
    ||||| |||||||||||||| ||||||||||| ||| |||  |||| || ||||||||||||||||  ||||||||||    
T  27824744 ttatccaaaatacaaaaatagctttttgtccaacaaaaatcatataagatcaaaaattattcaataccataaaagttt 27824821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 10552790 - 10552733
Alignment:
Q  161 tttttgtccaccaacaatagtatatgaccaaaaattattcaatata--ataaaagttt 216  Q
    |||||||||||||| ||| ||||| || ||||||||||||||||||  ||||||||||    
T  10552790 tttttgtccaccaaaaatcgtataagatcaaaaattattcaatatatcataaaagttt 10552733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 216
Target Start/End: Complemental strand, 2122727 - 2122698
Alignment:
Q  187 accaaaaattattcaatataataaaagttt 216  Q
    ||||||||||||||||||||||||||||||    
T  2122727 accaaaaattattcaatataataaaagttt 2122698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 3689 - 3766
Alignment:
Q  139 ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagttt 216  Q
    ||||||||||||||||||||  ||||| |||||||| |||  |||| ||  |||||||||||||||| ||||||||||    
T  3689 ttatctaaaatacaaaaatagttttttatccaccaaaaatcatataagataaaaaattattcaatatcataaaagttt 3766  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 3359910 - 3359974
Alignment:
Q  152 aaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagttt 216  Q
    |||||||  |||||||| ||||| ||||||||| ||| |||||||||||||||| ||||||||||    
T  3359910 aaaaatagttttttgtcgaccaaaaatagtataagacaaaaaattattcaatatcataaaagttt 3359974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 29992751 - 29992813
Alignment:
Q  139 ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaa 202  Q
    |||||||||||||||||  || |||||||||||||| ||| ||||| |||||||||||||||||    
T  29992751 ttatctaaaatacaaaataat-tttttgtccaccaaaaatcgtataagaccaaaaattattcaa 29992813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 21408682 - 21408749
Alignment:
Q  139 ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataa 207  Q
    ||||||||||||||||||||  |||| |||||| || ||| ||||| ||  ||||||||||||||||||    
T  21408682 ttatctaaaatacaaaaata-gttttcgtccactaaaaatcgtataagataaaaaattattcaatataa 21408749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 29455908 - 29455979
Alignment:
Q  144 taaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagttt 216  Q
    |||||||| |||||| | ||||||||||||| |||  |||| ||||||| |||||||||||  ||||||||||    
T  29455908 taaaataccaaaatagcgttttgtccaccaa-aatcatataagaccaaatattattcaataccataaaagttt 29455979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 26180315 - 26180395
Alignment:
Q  96 ttcactaaaccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaat 178  Q
    |||||||||||| ||| ||||||||| || || ||||||| |  ||| ||||||||||||||| |||||||||||| ||||||    
T  26180315 ttcactaaaccatatcacaactttttatcctacgtacaaagt--tatttaaaatacaaaaataactttttgtccacaaacaat 26180395  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 31880098 - 31880210
Alignment:
Q  97 tcactaaaccacatctcaactttttgtcttatgtacaaattattatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaatt 196  Q
    |||| |||||||||| ||||| |||||| || |||||| || |   ||||||||| |||||| | |||||||| |||||||| |||||  || |||||||    
T  31880098 tcaccaaaccacatcacaactatttgtcctacgtacaagttgt---ctaaaataccaaaatagcattttgtcccccaacaatcgtataatacaaaaaatt 31880194  T
Q  197 attcaatataataaaa 212  Q
    ||||||| | ||||||    
T  31880195 attcaatgtcataaaa 31880210  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 17031192 - 17031132
Alignment:
Q  139 ttatctaaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattatt 199  Q
    |||| ||||||||||||||| |||||||||||| || |||  |||| ||||||||||||||    
T  17031192 ttatttaaaatacaaaaatagctttttgtccacaaaaaatcatataagaccaaaaattatt 17031132  T

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Target: scaffold0155 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 33610 - 33682
Alignment:
Q  144 taaaatacaaaaatatctttttgtccaccaacaatagtatatgaccaaaaattattcaatataataaaagttt 216  Q
    |||||||| ||||||   ||||||||| ||| | | ||||| |||||||||||||||||||| ||||||||||    
T  33610 taaaataccaaaataggcttttgtccatcaaaacttgtataagaccaaaaattattcaatatcataaaagttt 33682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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