View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4418_low_43 (Length: 215)
Name: NF4418_low_43
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_low_43 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 38321606 - 38321820
Alignment:
| Q |
1 |
tgatgtaagtttatatatatttttggaattcacaatttaattacactctatcttgaatttgtttaacctcgttgctgtccttttcacttgtgaaatataa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38321606 |
tgatgtaagtttatatatatttttggaattcataatttaattacactctatcttgaatttgtttaacctcgttgctgtccttttcacttgtgaaatataa |
38321705 |
T |
|
| Q |
101 |
taggaattgaaaactcaccatgagcagcttgttactggaaaatcccaacttgatatttacttagctgagtcacatttggattttcgttgttatgaagata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38321706 |
taggaattgaaaactcaccatgagcagcttgttactggaaaatcccaacttgatatttacttagctgagtcaaatttggattttcgttgttatgaagata |
38321805 |
T |
|
| Q |
201 |
tggatgtattacagt |
215 |
Q |
| |
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||||||||||||||| |
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| T |
38321806 |
tggatgtattacagt |
38321820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 38317513 - 38317729
Alignment:
| Q |
3 |
atgtaagtttatatatatttttggaattcacaatttaattacactctatcttgaatttgtttaacctcgttgctgtccttttcacttgtgaaatataata |
102 |
Q |
| |
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|||||||||||||||||||||| |||| |||||||||||| || | ||||||||||||||||||| ||||| |||||||||| |||||||||||||| |
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| T |
38317513 |
atgtaagtttatatatattttttgaatcagcaatttaattactttccaccttgaatttgtttaacctcattgctttccttttcacgtgtgaaatataata |
38317612 |
T |
|
| Q |
103 |
ggaattgaaaactcaccatgagcagcttgttactg------gaaaatcccaacttgatatttacttagctgagtcacatttggattttcgttgttatgaa |
196 |
Q |
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|||||||||| ||||| |||||||||||||| ||||||| ||||||||| ||||||||| ||||||| |||||||||||| |||||||||| |
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| T |
38317613 |
ggaattgaaagtgcaccaacggcagcttgttactgaaactagaaaatctcaacttgatgtttacttagatgagtcaaatttggattttcattgttatgaa |
38317712 |
T |
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| Q |
197 |
gatatggatgtattaca |
213 |
Q |
| |
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||||||||||||||||| |
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| T |
38317713 |
gatatggatgtattaca |
38317729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 38306758 - 38306976
Alignment:
| Q |
1 |
tgatgtaagtttatatatatttttggaattcacaatttaattacactctatcttgaatttgtttaacctcgttgctgtccttttcacttgtgaaatataa |
100 |
Q |
| |
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||||||||||| |||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||| | || ||||||||||||||||| || |
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| T |
38306758 |
tgatgtaagttcatatatattttttgaactaacaatttaattactttctatcttgaatttgtttaacctcgttgatttctttttcacttgtgaaatacaa |
38306857 |
T |
|
| Q |
101 |
taggaattgaaaactcaccatgagcagcttgtt------actggaaaatcccaacttgatatttacttagctgagtcacatttggattttcgttgttatg |
194 |
Q |
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||||||||||||| | ||| | ||||||||| |||| ||| || ||||||||| ||||||||| ||||||| |||||| ||||| |||| ||| |
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| T |
38306858 |
taggaattgaaaatgaaacatcaacagcttgttaccgaaactgaaaagtctcaacttgatgtttacttagatgagtcagatttgggttttctttgtaatg |
38306957 |
T |
|
| Q |
195 |
aagatatggatgtattaca |
213 |
Q |
| |
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||||||||||||||||||| |
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| T |
38306958 |
aagatatggatgtattaca |
38306976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 38326380 - 38326528
Alignment:
| Q |
63 |
ttaacctcgttgctgtccttttcacttgtgaaatataataggaattgaaaactcaccatgagcagcttgttactggaaaatcccaacttgatatttactt |
162 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| | || |||||||||||||| || ||||||||| ||||||| |
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| T |
38326380 |
ttaacctcgttgctttccttttcacttgtgaaatgtaataggaattgaaaatgcaccatcaacaacttgttactggaaagtctcaacttgatgtttactt |
38326479 |
T |
|
| Q |
163 |
agctgagtcacatttggattttcgttgttatgaagatatggatgtatta |
211 |
Q |
| |
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| ||| ||| |||||||||||||||||||||||| |||||||||||| |
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| T |
38326480 |
ggatgaatcaagtttggattttcgttgttatgaagacatggatgtatta |
38326528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 38309550 - 38309720
Alignment:
| Q |
51 |
tcttgaatttgtttaacctcgttgctgtccttttcacttgtgaaatataataggaattgaaaactcaccatgagcagcttgttactggaa------aatc |
144 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||| || |||| |
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| T |
38309550 |
tcttgaatttgtttaacctcattgctttccttttcacgtgtgagatataataggaattgaaagtgcaccaacggcagcttgttactgaaactgaaaaatc |
38309649 |
T |
|
| Q |
145 |
ccaacttgatatttacttagctgagtcacatttggattttcgttgttatgaagatatggatgtattacagt |
215 |
Q |
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||||||||| ||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38309650 |
tcaacttgatgtttacttagatgagtcaaatttggattttcattgttatgaagatatggatgtattacagt |
38309720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 38314100 - 38314319
Alignment:
| Q |
1 |
tgatgtaagtttatata-tatttttggaattcacaatttaattacactctatcttgaatttgtttaacctcgttgctgtccttttcacttgtgaaatata |
99 |
Q |
| |
|
||||||| ||||||||| | ||||| |||| ||||||||||||| ||||||||||||||||||||||| ||||| || |||| |||||||||||||| |
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| T |
38314100 |
tgatgtacgtttatataattttttttgaatcaacaatttaattactttctatcttgaatttgtttaaccttattgctttctttttaacttgtgaaatata |
38314199 |
T |
|
| Q |
100 |
ataggaattgaaaactcaccatgagcagcttgtt------actggaaaatcccaacttgatatttacttagctgagtcacatttggattttcgttgttat |
193 |
Q |
| |
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||| |||||||||| |||||| | ||||||||| |||||||| || |||||||| ||||||| | |||||| ||||| ||||| ||| |||| |
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|
| T |
38314200 |
atatgaattgaaaatgcaccatcaacagcttgttactaaaactggaaagtctgaacttgatgtttactttgacgagtcagatttgaattttggttcttat |
38314299 |
T |
|
| Q |
194 |
gaagatatggatgtattaca |
213 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
38314300 |
gaagatatggatgtattaca |
38314319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 38300908 - 38301078
Alignment:
| Q |
51 |
tcttgaatttgtttaacctcgttgctgtccttttcacttgtgaaatataataggaattgaaaactcaccatgagcagcttgttactggaa------aatc |
144 |
Q |
| |
|
|||| ||||| ||||||| | ||||| ||||||||| |||||||||||||||||||||||| |||||| | ||||||||||||| || |||| |
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| T |
38300908 |
tctttaatttttttaaccccattgcttcccttttcacgtgtgaaatataataggaattgaaagtgcaccatcaacagcttgttactgaaactgggaaatc |
38301007 |
T |
|
| Q |
145 |
ccaacttgatatttacttagctgagtcacatttggattttcgttgttatgaagatatggatgtattacagt |
215 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
38301008 |
tgaacttgatgtttacttagatgagtcaaatttggattttcgttgtgatgaagatatggatgtattacagt |
38301078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 38849825 - 38849607
Alignment:
| Q |
1 |
tgatgtaagtttatatatatttttggaattcacaatttaattacactctatcttgaatttgtttaacctcgttgctgtccttttcacttgtgaaatataa |
100 |
Q |
| |
|
|||||||||||| ||||||||||| | || ||| || ||||||| ||||||||||||||||||||| || ||| | ||||||||||||||||||| ||| |
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|
| T |
38849825 |
tgatgtaagtttttatatattttttggatcaacacttaaattacattctatcttgaatttgtttaacttcattggtttccttttcacttgtgaaatgtaa |
38849726 |
T |
|
| Q |
101 |
taggaattgaaaactcaccatgagcagcttgtt------actggaaaatcccaacttgatatttacttagctgagtcacatttggattttcgttgttatg |
194 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| |||||||| || ||||||||| ||||||||| ||||||| |||||||||||||||||||| |
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| T |
38849725 |
taggaattgaaagtgcaccatcagcagcttgttaccaaaactggaaagtctcaacttgatgtttacttagatgagtcagttttggattttcgttgttatg |
38849626 |
T |
|
| Q |
195 |
aagatatggatgtattaca |
213 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
38849625 |
cagaaatggatgtattaca |
38849607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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