View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4418_low_44 (Length: 214)
Name: NF4418_low_44
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_low_44 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 33152544 - 33152751
Alignment:
| Q |
1 |
tcattaaaaatagcaaataagttgttggtcgtaca-atttggttc-tctatttttatctcactttgaagtgaattggttacatcacatcacgtggttcgc |
98 |
Q |
| |
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||||||||||||||||||||||||||||| || || || | ||| ||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
33152544 |
tcattaaaaatagcaaataagttgttggttgttcacatatcattcctctatttttatctcactttgaagtgaattggttacattacatca--------gc |
33152635 |
T |
|
| Q |
99 |
aaatgtataaatatatctgtagtactcatatttttggattatgaagaaaaactatgatattaactgttaatagaaaattgaatttatatggaattggctt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33152636 |
aaatgtataaatatatctgtagtactcatatttttggattatgaagaaaaactatgatattaactgttaatagaaaattgaatttatatggaattggctt |
33152735 |
T |
|
| Q |
199 |
ctcatacaattgatgc |
214 |
Q |
| |
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|||||||||||||||| |
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| T |
33152736 |
ctcatacaattgatgc |
33152751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 900946 - 900904
Alignment:
| Q |
1 |
tcattaaaaatagcaaataagttgttggtcgtacaatttggtt |
43 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
900946 |
tcattaaaaatagcaaataagttgttggttgtacaatttggtt |
900904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15434473 - 15434431
Alignment:
| Q |
1 |
tcattaaaaatagcaaataagttgttggtcgtacaatttggtt |
43 |
Q |
| |
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||||||||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
15434473 |
tcattaaaagtagcaaataagttgttggttgtacaatttggtt |
15434431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 30839778 - 30839742
Alignment:
| Q |
3 |
attaaaaatagcaaataagttgttggtcgtacaattt |
39 |
Q |
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|
|||||||||||||| ||| |||||||||||||||||| |
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|
| T |
30839778 |
attaaaaatagcaagtaaattgttggtcgtacaattt |
30839742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29396505 - 29396465
Alignment:
| Q |
1 |
tcattaaaaatagcaaataagttgttggtcgtacaatttgg |
41 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
29396505 |
tcattaaaaatagcaaataagttgttggttgtacaatttgg |
29396465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 22957038 - 22956998
Alignment:
| Q |
3 |
attaaaaatagcaaataagttgttggtcgtacaatttggtt |
43 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
22957038 |
attaaaaatagcaagtaagttgttggttgtacaatttggtt |
22956998 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 23831354 - 23831394
Alignment:
| Q |
3 |
attaaaaatagcaaataagttgttggtcgtacaatttggtt |
43 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
23831354 |
attaaaaatagcaagtaagttgttggttgtacaatttggtt |
23831394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 26847768 - 26847807
Alignment:
| Q |
1 |
tcattaaaaatagcaaataagttgttggtcgtacaatttg |
40 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
26847768 |
tcattaaaaatagcaaataagttgttggttgtacaatttg |
26847807 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2043792 - 2043754
Alignment:
| Q |
1 |
tcattaaaaatagcaaataagttgttggtcgtacaattt |
39 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
2043792 |
tcattaaagatagcaaataagttgttggttgtacaattt |
2043754 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 33538236 - 33538197
Alignment:
| Q |
1 |
tcattaaaaatagcaaataagttgttggtcgtacaatttg |
40 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||| |
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| T |
33538236 |
tcattaaaaatagtaaataagttgttggttgtacaatttg |
33538197 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 2363076 - 2363156
Alignment:
| Q |
126 |
atatttttggattatgaagaaaaactatgatattaactgttaatagaaaattgaatttatatggaattggcttctcataca |
206 |
Q |
| |
|
||||||||||||| || | |||||||| ||||| |||||| || |||||||| | |||||||||||||||||| |||| |
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|
| T |
2363076 |
atatttttggattgggattataaactatggtattagctgttactaagaaattgaactgatatggaattggcttctcgtaca |
2363156 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 10366626 - 10366587
Alignment:
| Q |
1 |
tcattaaaaatagcaaataagttgttggtcgtacaatttg |
40 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||| |
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|
| T |
10366626 |
tcattaaaaataacaaataagttgttggttgtacaatttg |
10366587 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9388621 - 9388583
Alignment:
| Q |
1 |
tcattaaaaatagcaaataagttgttggtcgtacaattt |
39 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
9388621 |
tcattaaaaatagtaaataagttgttggttgtacaattt |
9388583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 45849522 - 45849562
Alignment:
| Q |
3 |
attaaaaatagcaaataagttgttggtcgtacaatttggtt |
43 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
45849522 |
attaaaaatagcaaataaattattggttgtacaatttggtt |
45849562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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