View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4418_low_5 (Length: 628)
Name: NF4418_low_5
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4418_low_5 |
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[»] scaffold0045 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 490; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 14 - 614
Target Start/End: Complemental strand, 41932477 - 41931888
Alignment:
Q |
14 |
ataatactcggtggtgtgatatcccttgtatgtccctttaaagaatttttgtttttctactttcaatttagggcccaccagtaatagtatgtatggtttg |
113 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
T |
41932477 |
ataatactcggtggtgtgatatcccttgtatgtccctttaaagaatttttgtttttctactttcaatttagggcccaccagtaatagtatgtatagtttg |
41932378 |
T |
|
Q |
114 |
gtgatggaccactttgttctctat--ttatctcttgcaaataatattgagaatttctttttatatgtttatagttctcacgctttcacgattctcacacg |
211 |
Q |
|
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
41932377 |
gtgatggaccactttgttctctatatttatctcttgcaaataatattcagaatttctttttatatgtttatagttctcacgctttcacgattctcacacg |
41932278 |
T |
|
Q |
212 |
ttctctgaatgaattattttatggcgtttaatttattagttcagcaaaatttattaaaatgacataatttaaaattgacaacaaaaattaataactcaac |
311 |
Q |
|
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
41932277 |
ttctctgaatagattattt-atggcgtttaatttattagttcagcaaaatttattaaaatgacataatttaaaattgacaacaaaaattaataactcaac |
41932179 |
T |
|
Q |
312 |
acattttattaattgaaatagatttcataatatatttacgttaacataacactatattgtataaaatgttggcaactaaaattaaatatgtagtacaaga |
411 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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|
T |
41932178 |
acattttattaattgaaatagatttcataatatatttatattaacata---------tgtacaaaatgttggcaactaaaattaaatatgtagtacaaga |
41932088 |
T |
|
Q |
412 |
agatggaggtgaaacgaaggagaagacctgtcatccctctcatgtaccctcagaagaatttgagaacgcaacatgatgatgtggagaaaaaggtggaaac |
511 |
Q |
|
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| ||| |
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|
T |
41932087 |
agatggaggtggaacgaaggagaagacatgtcatccctctcatgtaccctcagaagaatttgaaaac---acatgatgatgtggaggaaaaggtgggaac |
41931991 |
T |
|
Q |
512 |
tgaattaaacaatcacatattcaaatatatctacattacatactacgaagcgggaacacaagttcatgtggtcaatttgaccattcatactaacccaaga |
611 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
41931990 |
tgaattaaacaatcacatattcaaatatatctacattacatactacgaagcgggaacacaagttcatgtggtcaatttgaccattcatactaacccaaga |
41931891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 420
Target Start/End: Complemental strand, 40186504 - 40186436
Alignment:
Q |
352 |
ttaacataacactatattgtataaaatgttggcaactaaaattaaatatgtagtacaagaagatggagg |
420 |
Q |
|
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||||||||||||| | | ||| ||||| |||||||||||||||||| ||||| ||||||||||||||| |
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|
T |
40186504 |
ttaacataacactgtgtagtacaaaatattggcaactaaaattaaacttgtagcacaagaagatggagg |
40186436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 40186605 - 40186536
Alignment:
Q |
280 |
ttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatattta |
349 |
Q |
|
|
|||||||||||||||||| ||||||| | | |||||||||||||||||| ||||||| |||| ||||| |
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|
T |
40186605 |
ttaaaattgacaacaaaatttaataattaataacattttattaattgaaaatgatttcaaaatacattta |
40186536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 5e-36; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 260 - 489
Target Start/End: Complemental strand, 47865960 - 47865731
Alignment:
Q |
260 |
atttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacata |
359 |
Q |
|
|
||||||||||||||| ||||||| |||||||||||||| ||| || ||| |||||||||||||||||| |||||| ||||||||||||||| ||| |
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T |
47865960 |
atttattaaaatgacgtaatttataattgacaacaaaatttatcaattcatcacattttattaattgaacatgatttcgtaatatatttacgttgacacg |
47865861 |
T |
|
Q |
360 |
acactatattgtataaaatgttggcaactaaaattaaatatgtagtacaagaagatggaggtgaaacgaaggagaagacctgtcatccctctcatgtacc |
459 |
Q |
|
|
||||||| || |||| ||| |||||||||| |||||||| |||||||||||||| ||||| || || |||||| |||||||||| |||||| || |
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T |
47865860 |
acactatgcattacaaaaggttagcaactaaaactaaatatgaagtacaagaagatgaaggtggaaggagagagaaggtttgtcatccctttcatgtgcc |
47865761 |
T |
|
Q |
460 |
ctcagaagaatttgagaacgcaacatgatg |
489 |
Q |
|
|
||| || ||||||||||| ||| |||||| |
|
|
T |
47865760 |
ttcaaaataatttgagaacacaagatgatg |
47865731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 265 - 420
Target Start/End: Original strand, 26719253 - 26719405
Alignment:
Q |
265 |
ttaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacataacact |
364 |
Q |
|
|
||||||||||||||| ||||| |||||| ||| ||||||| ||||||||||||||||||| ||| ||||| |||||| || ||||||||||||| |
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|
T |
26719253 |
ttaaaatgacataatataaaactgacaatgaaatttaataattcaacacattttattaattcaaaaggattttataata----cacattaacataacact |
26719348 |
T |
|
Q |
365 |
atattgtataaaatg-ttggcaactaaaattaaatatgtagtacaagaagatggagg |
420 |
Q |
|
|
| ||||| |||||| ||| || | ||| ||||| |||| |||||||||||||||| |
|
|
T |
26719349 |
aatttgtacaaaatgtttgacatcaaaagctaaatttgtaatacaagaagatggagg |
26719405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 28963953 - 28964019
Alignment:
Q |
258 |
aaatttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaat |
324 |
Q |
|
|
|||||||||||||||| |||||||||||| |||||||||| ||| ||| |||||||| ||||||||| |
|
|
T |
28963953 |
aaatttattaaaatgatataatttaaaatggacaacaaaatttattaattcaacacaatttattaat |
28964019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 46567122 - 46567056
Alignment:
Q |
262 |
ttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaa |
328 |
Q |
|
|
|||||||||| |||| ||||||||||||||| |||| ||||||| ||| |||||||||||||||||| |
|
|
T |
46567122 |
ttattaaaatcacattatttaaaattgacaataaaatttaataaatcatcacattttattaattgaa |
46567056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 404
Target Start/End: Original strand, 35756427 - 35756569
Alignment:
Q |
262 |
ttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaa-atagatttcataatatatttacgttaacataa |
360 |
Q |
|
|
|||||| ||||| ||| |||||||||||||| |||| ||||||| | | ||||||||| ||| |||| ||| ||||||||| | || ||| ||| || || |
|
|
T |
35756427 |
ttattataatgatatattttaaaattgacaataaaacttaataatttatcacattttagtaaatgaacata-atttcataacacatatacattatcacaa |
35756525 |
T |
|
Q |
361 |
cactatattgtataaaatgttggcaactaaaattaaatatgtag |
404 |
Q |
|
|
|||| | | |||||||||||||||||||||| |||||||||| |
|
|
T |
35756526 |
cactgtgtactataaaatgttggcaactaaaacgaaatatgtag |
35756569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 259 - 420
Target Start/End: Complemental strand, 31218558 - 31218396
Alignment:
Q |
259 |
aatttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacat |
358 |
Q |
|
|
|||||||||||| |||| |||||||||||||||| |||| ||||||| | | | | ||||||||| || |||||||||| | |||||| || | | |
|
|
T |
31218558 |
aatttattaaaaggacaaaatttaaaattgacaaaaaaatttaataattgagcctaatttattaatcaaacatgatttcataacacatttacaataccgt |
31218459 |
T |
|
Q |
359 |
aacactatattgtataaaatg-ttggcaactaaaattaaatatgtagtacaagaagatggagg |
420 |
Q |
|
|
|| |||| | ||| |||||| ||||||| |||| ||||||||||||| |||||||||||||| |
|
|
T |
31218458 |
aatgctatgtagtagaaaatgtttggcaattaaagttaaatatgtagtccaagaagatggagg |
31218396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 343
Target Start/End: Original strand, 26740772 - 26740850
Alignment:
Q |
265 |
ttaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataata |
343 |
Q |
|
|
||||| |||||||| |||||| ||||| ||| ||||||| ||||||||||||||||||||||| ||||| |||||| |
|
|
T |
26740772 |
ttaaattgacataacataaaatcgacaatgaaatttaataattcaacacattttattaattgaaaaggattttataata |
26740850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 463
Target Start/End: Original strand, 31805405 - 31805606
Alignment:
Q |
262 |
ttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaatt-gaaatagatttcataatatatttacgttaacataa |
360 |
Q |
|
|
|||| |||||||||||||| |||||||| || |||| ||||||| ||| |||| | ||||| | || || |||||||||||| || ||| ||||||||| |
|
|
T |
31805405 |
ttatcaaaatgacataattaaaaattga-aataaaatttaataattcatcacaatctattatctagacat-gatttcataatacatatacattaacataa |
31805502 |
T |
|
Q |
361 |
cactatattgtataaaatgttgg-caactaaaattaaatatgtagtacaagaagatggaggtgaaacgaaggagaagacctgtcatccctctcatgtacc |
459 |
Q |
|
|
| ||| | ||| ||||| || | | ||||| ||||| || |||||||||| ||||||||| || || ||||||| | || ||||||||||||| ||| |
|
|
T |
31805503 |
cgctaattagtacaaaatatttgacgcctaaagctaaatttgaagtacaagaatatggaggtggaatgagggagaaggcttgccatccctctcatggacc |
31805602 |
T |
|
Q |
460 |
ctca |
463 |
Q |
|
|
|||| |
|
|
T |
31805603 |
ctca |
31805606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 374 - 422
Target Start/End: Original strand, 8005140 - 8005188
Alignment:
Q |
374 |
aaaatgttggcaactaaaattaaatatgtagtacaagaagatggaggtg |
422 |
Q |
|
|
||||| ||||||||||||| ||||||||| ||||||||||||||||| |
|
|
T |
8005140 |
aaaatattggcaactaaaaccgaatatgtagcacaagaagatggaggtg |
8005188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 8e-35; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 266 - 420
Target Start/End: Original strand, 32979609 - 32979764
Alignment:
Q |
266 |
taaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacataacacta |
365 |
Q |
|
|
|||||||||||||||||||||| |||||| || ||||||| ||| |||||||||||| ||||| |||||||||||| |||| | |||||||||||||| |
|
|
T |
32979609 |
taaaatgacataatttaaaatttacaacataatttaataattcatcacattttattatttgaacatgatttcataatacatttgcattaacataacacta |
32979708 |
T |
|
Q |
366 |
tattgtataaaatgt-tggcaactaaaattaaatatgtagtacaagaagatggagg |
420 |
Q |
|
|
| | ||| ||||||| ||||||||| |||||||| ||||| ||||||||||||||| |
|
|
T |
32979709 |
tgtagtacaaaatgtgtggcaactagaattaaatctgtagcacaagaagatggagg |
32979764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 262 - 383
Target Start/End: Complemental strand, 24814783 - 24814662
Alignment:
Q |
262 |
ttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacataac |
361 |
Q |
|
|
||||||||| || ||||||||||| ||||||||||| ||||||| | | ||||||||||| |||||| |||| |||||| |||||| |||||||||| |
|
|
T |
24814783 |
ttattaaaaagatataatttaaaactgacaacaaaatttaataatttatcacattttattgattgaacatgattccataatgcatttacattaacataac |
24814684 |
T |
|
Q |
362 |
actatattgtataaaatgttgg |
383 |
Q |
|
|
|||| | ||||||||| |||| |
|
|
T |
24814683 |
actaagtagtataaaatattgg |
24814662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 265 - 343
Target Start/End: Complemental strand, 26266112 - 26266034
Alignment:
Q |
265 |
ttaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataata |
343 |
Q |
|
|
||||||||| ||||||||||||||||| ||||| ||| ||| |||||||| ||||||| ||||| ||||||| ||||| |
|
|
T |
26266112 |
ttaaaatgatataatttaaaattgacagcaaaatttattaattcaacacaatttattagttgaacaagatttcgtaata |
26266034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 43048931 - 43048876
Alignment:
Q |
259 |
aatttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacaca |
314 |
Q |
|
|
|||||||||||||||||| |||| ||||||||||||||| || ||| |||||||| |
|
|
T |
43048931 |
aatttattaaaatgacatgatttgaaattgacaacaaaatttgttaattcaacaca |
43048876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 262 - 420
Target Start/End: Original strand, 29526269 - 29526427
Alignment:
Q |
262 |
ttattaaaatgacat--aatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacata |
359 |
Q |
|
|
|||||||||||| || |||||||||| |||||||||| || |||| ||| |||||||||||||||||||| ||| ||||||||||||||| ||| |||| |
|
|
T |
29526269 |
ttattaaaatgatatctaatttaaaat-gacaacaaaattttataattcatcacattttattaattgaaat-gatgtcataatatatttacattagcata |
29526366 |
T |
|
Q |
360 |
acactatattgtataaaatgttggcaactaaaattaaatatgtagtacaagaagatggagg |
420 |
Q |
|
|
||||||| | |||||||||||| ||||||||||||||| ||||| |||| ||||||||| |
|
|
T |
29526367 |
acactatgtagtataaaatgttcacaactaaaattaaatttgtagcacaaacagatggagg |
29526427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 44340591 - 44340530
Alignment:
Q |
259 |
aatttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttatt |
321 |
Q |
|
|
||||||| ||||||||||||| |||| |||||||||||| ||||||| ||| ||| ||||||| |
|
|
T |
44340591 |
aatttatcaaaatgacataatataaa-ttgacaacaaaatttaataattcatcacgttttatt |
44340530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 24736274 - 24736214
Alignment:
Q |
264 |
attaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaatt |
325 |
Q |
|
|
|||| |||||||||| ||||| | |||||| ||| ||||||| ||||||||||||||||||| |
|
|
T |
24736274 |
attataatgacataacttaaagt-gacaaccaaatttaataattcaacacattttattaatt |
24736214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 279 - 412
Target Start/End: Original strand, 21833990 - 21834123
Alignment:
Q |
279 |
tttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagattt-cataatatatttacgttaacataacactatattgtataaaa |
377 |
Q |
|
|
|||||||||||||| |||| ||||||| ||| |||||||||||||||||| || |||| ||||||| ||||| |||||||||||||||| | ||| |||| |
|
|
T |
21833990 |
tttaaaattgacaagaaaatttaataattcatcacattttattaattgaa-tatattttcataatacatttatgttaacataacactatctagtaaaaaa |
21834088 |
T |
|
Q |
378 |
tgttggcaactaaaattaaatatgtagtacaagaa |
412 |
Q |
|
|
| ||||||||||||| ||||||||||||| ||||| |
|
|
T |
21834089 |
tattggcaactaaaactaaatatgtagtaaaagaa |
21834123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 264 - 420
Target Start/End: Complemental strand, 65202 - 65046
Alignment:
Q |
264 |
attaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacataacac |
363 |
Q |
|
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| ||| | ||||||| |||||| ||||||||| |
|
|
T |
65202 |
attaaaatgacataatttaaaattgacaacaaaatttaataattcaacacaatttattaattgaacaaga-tacataatacatttacaataacataacgg |
65104 |
T |
|
Q |
364 |
tatattgtataaaatg-ttggcaactaaaattaaatatgtagtacaagaagatggagg |
420 |
Q |
|
|
|| | ||| |||||| ||| |||||||| |||||||||||||| |||| |||||||| |
|
|
T |
65103 |
gatttagtacaaaatgtttgtcaactaaagttaaatatgtagtataagatgatggagg |
65046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 264 - 420
Target Start/End: Complemental strand, 72534 - 72378
Alignment:
Q |
264 |
attaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacataacac |
363 |
Q |
|
|
|||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| ||| | ||||||| |||||| ||||||||| |
|
|
T |
72534 |
attaaaatgacataatttaaaattgacaacaaaatttaataattcaacacaatttattaattgaacaaga-tacataatacatttacaataacataacgg |
72436 |
T |
|
Q |
364 |
tatattgtataaaatg-ttggcaactaaaattaaatatgtagtacaagaagatggagg |
420 |
Q |
|
|
|| | ||| |||||| ||| |||||||| |||||||||||||| |||| |||||||| |
|
|
T |
72435 |
gatttagtacaaaatgtttgtcaactaaagttaaatatgtagtataagatgatggagg |
72378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 246 - 435
Target Start/End: Complemental strand, 29152999 - 29152811
Alignment:
Q |
246 |
attagttcagcaaaatttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatata |
345 |
Q |
|
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| |||||| |||||||||| | ||| ||||| | |
|
|
T |
29152999 |
attagttcaacaaaatttattaaaatgacataatttaaaattgtaaacaaaatttaataattcatcacattaaattaattgaacatgtttttctaataca |
29152900 |
T |
|
Q |
346 |
tttacgttaacataacactatattgtataaaatgttggcaactaaaattaaatatgtagtacaagaagatggaggtgaaacgaaggagaa |
435 |
Q |
|
|
||||| | | || |||||||| | || ||||||| |||||| | | | ||||| ||||| | || |||||||||||| || ||||||||| |
|
|
T |
29152899 |
tttacatcagcaaaacactatgtagtgtaaaatgatggcaattgacactaaatttgtagca-aaaaagatggaggtggaaggaaggagaa |
29152811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 262 - 422
Target Start/End: Complemental strand, 13492494 - 13492335
Alignment:
Q |
262 |
ttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaa-atagatttcataatatatttacgttaacataa |
360 |
Q |
|
|
|||||||||||||||||||||||||||||||| ||| ||||||| | | ||||||||||| |||||| ||| |||| ||||| |||||| ||| ||||| |
|
|
T |
13492494 |
ttattaaaatgacataatttaaaattgacaac-aaatttaataatttatcacattttattgattgaacata-attttataatgcatttacattagcataa |
13492397 |
T |
|
Q |
361 |
cactatattgtataaaatgttggcaactaaaattaaatatgtagtacaagaagatggaggtg |
422 |
Q |
|
|
||| | | ||||||| | ||||||||||||| |||| | ||| ||| ||||||||||||| |
|
|
T |
13492396 |
caccaagtagtataaattattggcaactaaaactaaacctctagcacaggaagatggaggtg |
13492335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 277 - 420
Target Start/End: Complemental strand, 4427426 - 4427282
Alignment:
Q |
277 |
aatttaaaattgacaacaaaaattaataactcaacacattttattaattgaa-atagatttcataatatatttacgttaacataacactatattgtataa |
375 |
Q |
|
|
||||||||||||||||||||| |||||| ||| || |||||||||| ||| ||| |||||| ||||||| ||| ||||||||| | || || ||| || |
|
|
T |
4427426 |
aatttaaaattgacaacaaaatttaatagttcatcagattttattaagcgaacata-atttcaaaatatatctacattaacataaaattagatagtacaa |
4427328 |
T |
|
Q |
376 |
aatg-ttggcaactaaaattaaatatgtagtacaagaagatggagg |
420 |
Q |
|
|
|||| ||| | ||||||| ||||| ||||| |||||||| |||||| |
|
|
T |
4427327 |
aatgtttgacgactaaaactaaatttgtagcacaagaaggtggagg |
4427282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 273 - 419
Target Start/End: Complemental strand, 17261240 - 17261103
Alignment:
Q |
273 |
acataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacataacactatattgta |
372 |
Q |
|
|
||||||||||||||| | ||||||| ||||||| ||| || |||||||| |||||| ||||||| |||||| ||||||||||||||| | ||| |
|
|
T |
17261240 |
acataatttaaaatt-ataacaaaatttaataattcagcatattttatttattgaa--------cataatacatttacattaacataacactatgtagta |
17261150 |
T |
|
Q |
373 |
taaaatgttggcaactaaaattaaatatgtagtacaagaagatggag |
419 |
Q |
|
|
|||| |||| ||||||||| || || ||||| ||||||| |||||| |
|
|
T |
17261149 |
caaaaagttgacaactaaaactatatttgtagcacaagaatatggag |
17261103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 265 - 364
Target Start/End: Complemental strand, 18632363 - 18632264
Alignment:
Q |
265 |
ttaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataatatatttacgttaacataacact |
364 |
Q |
|
|
||||| |||||| || |||||||||||| |||| ||||||| |||||||||||||||||| || ||| || ||| ||||||||| |||| ||||||| |
|
|
T |
18632363 |
ttaaagtgacatgatataaaattgacaataaaatttaataatacaacacattttattaattaaagaagaatttatattatatttacaataacttaacact |
18632264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 366
Target Start/End: Original strand, 39228841 - 39228943
Alignment:
Q |
264 |
attaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatag-atttcataatatatttacgttaacataaca |
362 |
Q |
|
|
|||||| ||||||||| ||||||| ||||||||| ||| || |||||||| ||||||||||| ||||| |||| ||||||| ||||| ||| |||||| |
|
|
T |
39228841 |
attaaagtgacataatataaaatttacaacaaaatttataaattcaacacaatttattaattg-aatagaattttataatatgtttacattagcataact |
39228939 |
T |
|
Q |
363 |
ctat |
366 |
Q |
|
|
|||| |
|
|
T |
39228940 |
ctat |
39228943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 297
Target Start/End: Complemental strand, 53967247 - 53967209
Alignment:
Q |
259 |
aatttattaaaatgacataatttaaaattgacaacaaaa |
297 |
Q |
|
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
T |
53967247 |
aatttattaaaatgacataatttaaaattgtcaacaaaa |
53967209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 52975220 - 52975275
Alignment:
Q |
241 |
aatttattagttcagcaaaatttattaaaatgacataatttaaaattgacaacaaaa |
297 |
Q |
|
|
||||||||| |||| || ||| ||||||||| ||||||||||||||||||||||||| |
|
|
T |
52975220 |
aatttattaattcaacataatatattaaaat-acataatttaaaattgacaacaaaa |
52975275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 355
Target Start/End: Original strand, 18822558 - 18822671
Alignment:
Q |
242 |
atttattagttcagcaaaatttattaaaatgacataatttaaaattgacaacaaaaattaataactcaacacattttattaattgaaatagatttcataa |
341 |
Q |
|
|
||||||||||||| || |||| ||||||||||||||||| ||||||||| ||| | | ||| |||| || ||||||||||||| ||||||||| |
|
|
T |
18822558 |
atttattagttcaacatgatttgctaaaatgacataatttataattgacaatcaaattgattaattcaatgcaatttattaattgaacacaatttcataa |
18822657 |
T |
|
Q |
342 |
tatatttacgttaa |
355 |
Q |
|
|
|| |||||| |||| |
|
|
T |
18822658 |
tacatttacattaa |
18822671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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