View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4418_low_7 (Length: 584)
Name: NF4418_low_7
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4418_low_7 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 569
Target Start/End: Complemental strand, 46313722 - 46313168
Alignment:
| Q |
18 |
aagaatgatgaaggatttcaaagttggttaaatcagttgaaaaaatgtgaggcttggagttgagagctagctaagaggaggttataannnnnnnctataa |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46313722 |
aagaatgatgaaggatttcaaagttggttaaatcagttgaaaaaatgtgaggcttggagttgagagctagctaagaggaggttataatttttttctataa |
46313623 |
T |
|
| Q |
118 |
aaagaagggacacggaaaagccaacctatgtatagcaatactctcaatttgttcttgataatttgattatttgggtttagctaattaaggccttgtttga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46313622 |
aaagaagggacacggaaaagccaacctatgtatagcaatactctcaatttgttcttgataatttgattatttgggtttagctaattaaggccttgtttga |
46313523 |
T |
|
| Q |
218 |
cgcttattaagagaccttgttcaacttatttcatgaacacgcatatatatgatatatacctcataatcaaaacgatagagagaccataattaaaggtagt |
317 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46313522 |
cgcttattaag-gaccttgttcaacttatttcatgaacacacatatatatgatatatacctcataatcaaaacaatagagagaccataattaaaggtagt |
46313424 |
T |
|
| Q |
318 |
atcaaatagttgactggtgatttttagttcagaaactaataacaag-nnnnnnnaacagactaaccaaactaataacaagttattaacatattaaatggt |
416 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
46313423 |
atcaaatagttgacaggtgatttttagttcagaaactaataacaagttttttttaacagactaaccaaactaataacaagttattaacagattaaatggt |
46313324 |
T |
|
| Q |
417 |
ctgataat---nnnnnnnnnnnnnnnncttttggcattaaccctccagtttccggggaaaggggccctggtaatccggagttcgaccatgaggtaatgat |
513 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46313323 |
ctgataataaaaaataaaaaaaaaaaacttttggcattaaccctccagtttccggggaaaggggccctggtaatccggagttcgaccatgaggtaatgat |
46313224 |
T |
|
| Q |
514 |
accggccaagacttgttccacctaggaatcgaactaaggttcttccgaacaatgat |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
46313223 |
accggccaagacttgttccacctaggaatcgaactagggttcttccgaacaatgat |
46313168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 566
Target Start/End: Complemental strand, 24978864 - 24978763
Alignment:
| Q |
467 |
ggggaaaggggccctggtaatccggagttcgaccatgaggtaatgata--ccggccaagacttgttccacctaggaatcgaactaaggttcttccgaaca |
564 |
Q |
| |
|
|||||| |||||| ||||||| | ||||||| | |||||||| ||| |||||||||| ||||||||||||||||||||||| | ||||| || |||| |
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|
| T |
24978864 |
ggggaagggggccttggtaattcagagttcggctttgaggtaagtataacccggccaagaattgttccacctaggaatcgaactcacgttctcccaaaca |
24978765 |
T |
|
| Q |
565 |
at |
566 |
Q |
| |
|
|| |
|
|
| T |
24978764 |
at |
24978763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 496
Target Start/End: Complemental strand, 3195482 - 3195427
Alignment:
| Q |
442 |
ttttggcattaaccctccagtttcc-ggggaaaggggccctggtaatccggagttc |
496 |
Q |
| |
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||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
3195482 |
ttttggcgttaaccctccagtttccaggggaaagaggccctggtaatccggagttc |
3195427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 514
Target Start/End: Complemental strand, 49634527 - 49634456
Alignment:
| Q |
442 |
ttttggcattaaccctccagtttccggggaaaggggccctggtaatccggagttcgaccatgaggtaatgata |
514 |
Q |
| |
|
|||| ||||||||||||| ||| || |||||||||||| ||||||||||||||| | || |||||||| |||| |
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|
| T |
49634527 |
tttttgcattaaccctccggtt-ccagggaaaggggccttggtaatccggagtttggccttgaggtaaggata |
49634456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 556
Target Start/End: Complemental strand, 10877274 - 10877154
Alignment:
| Q |
441 |
cttttggcattaaccctccagtttcc-ggggaaa--ggggccctggtaatccggagttcgaccatgaggtaatgata--ccggccaagacttgttccacc |
535 |
Q |
| |
|
||||||||||||||| ||| ||| | ||||||| |||| |||||| ||| ||||||| ||||||||||| |||| | |||||||| |||||| || |
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|
| T |
10877274 |
cttttggcattaaccgtccggttcctaggggaaattggggtcctggtgatctagagttcggccatgaggtaaggatagtctggccaagaattgttctaca |
10877175 |
T |
|
| Q |
536 |
taggaatcgaactaaggttct |
556 |
Q |
| |
|
||||||||||||| ||||||| |
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|
| T |
10877174 |
taggaatcgaactcaggttct |
10877154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 548
Target Start/End: Complemental strand, 22506425 - 22506316
Alignment:
| Q |
442 |
ttttggcattaaccctccagtttccgg-ggaaaggggccctggtaatccggagttcgaccatgaggtaatgata--ccggccaagacttgttccacctag |
538 |
Q |
| |
|
||||||| |||||||||| ||| || | |||||||| |||| |||| |||||||||| | |||||||| |||| | |||||| | |||||||| |||| |
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|
| T |
22506425 |
ttttggcgttaaccctccggttcccagtggaaagggtccctagtaacccggagttcggcagtgaggtaaggatagtctggccaataattgttccaactag |
22506326 |
T |
|
| Q |
539 |
gaatcgaact |
548 |
Q |
| |
|
|||||||||| |
|
|
| T |
22506325 |
gaatcgaact |
22506316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 554
Target Start/End: Complemental strand, 53380971 - 53380934
Alignment:
| Q |
517 |
ggccaagacttgttccacctaggaatcgaactaaggtt |
554 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
53380971 |
ggccaagaattgttccacctaggaatcgaacttaggtt |
53380934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 509
Target Start/End: Complemental strand, 17931604 - 17931544
Alignment:
| Q |
450 |
ttaaccctccagtt-tccggggaaaggggccctggtaatccggagttcgaccatgaggtaa |
509 |
Q |
| |
|
|||||||||| ||| || |||||| ||||||| |||||||||||||||| || |||||||| |
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|
| T |
17931604 |
ttaaccctccggttgtcaggggaagggggccccggtaatccggagttcggccgtgaggtaa |
17931544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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