View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4418_low_8 (Length: 571)

Name: NF4418_low_8
Description: NF4418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4418_low_8
NF4418_low_8
[»] chr3 (79 HSPs)
chr3 (7-557)||(28150871-28151415)
chr3 (1-396)||(28003114-28003512)
chr3 (159-396)||(27979557-27979794)
chr3 (245-396)||(27919515-27919666)
chr3 (255-396)||(28036614-28036755)
chr3 (4-111)||(27919307-27919414)
chr3 (191-340)||(11420146-11420295)
chr3 (4-112)||(27979427-27979538)
chr3 (4-111)||(11419936-11420043)
chr3 (12-122)||(28036380-28036490)
chr3 (200-342)||(28184908-28185050)
chr3 (4-122)||(27459938-27460056)
chr3 (198-335)||(28149039-28149176)
chr3 (255-343)||(17745306-17745394)
chr3 (255-343)||(19046626-19046714)
chr3 (4-90)||(17745552-17745638)
chr3 (4-90)||(19046872-19046958)
chr3 (209-329)||(28509770-28509890)
chr3 (255-329)||(26114053-26114127)
chr3 (209-325)||(28480591-28480707)
chr3 (478-529)||(28083122-28083173)
chr3 (478-529)||(28135494-28135545)
chr3 (487-536)||(8539621-8539670)
chr3 (210-342)||(28082856-28082988)
chr3 (345-396)||(27459625-27459676)
chr3 (259-329)||(26128809-26128879)
chr3 (478-539)||(18079138-18079199)
chr3 (198-287)||(28134742-28134831)
chr3 (258-314)||(27459738-27459794)
chr3 (486-529)||(17744990-17745033)
chr3 (486-529)||(19046310-19046353)
chr3 (255-342)||(28054572-28054659)
chr3 (478-529)||(28055917-28055968)
chr3 (255-342)||(28064997-28065084)
chr3 (478-529)||(28066342-28066393)
chr3 (478-529)||(28185312-28185363)
chr3 (345-395)||(18025265-18025315)
chr3 (348-396)||(8539835-8539883)
chr3 (488-536)||(27919871-27919919)
chr3 (488-539)||(26127956-26128007)
chr3 (488-539)||(26178006-26178057)
chr3 (345-396)||(27390833-27390884)
chr3 (486-537)||(28149284-28149335)
chr3 (478-512)||(28161470-28161504)
chr3 (345-378)||(11420332-11420365)
chr3 (347-396)||(28005112-28005161)
chr3 (255-303)||(26202529-26202577)
chr3 (416-472)||(28054955-28055011)
chr3 (416-472)||(28065380-28065436)
chr3 (348-387)||(18077341-18077380)
chr3 (345-396)||(19476136-19476187)
chr3 (496-539)||(26110962-26111005)
chr3 (345-396)||(26179558-26179609)
chr3 (496-539)||(26233308-26233351)
chr3 (349-396)||(26235989-26236036)
chr3 (497-532)||(27249808-27249843)
chr3 (345-396)||(27377540-27377591)
chr3 (478-529)||(28506894-28506945)
chr3 (345-379)||(26111203-26111237)
chr3 (490-532)||(26129267-26129309)
chr3 (490-532)||(26139909-26139951)
chr3 (490-532)||(26179323-26179365)
chr3 (345-379)||(26205486-26205520)
chr3 (345-379)||(26233549-26233583)
chr3 (348-393)||(26128207-26128252)
chr3 (345-386)||(26129518-26129559)
chr3 (348-393)||(26178257-26178302)
chr3 (496-529)||(27459377-27459410)
chr3 (487-532)||(28003718-28003763)
chr3 (420-472)||(8539704-8539756)
chr3 (270-326)||(26111550-26111606)
chr3 (348-396)||(26202091-26202139)
chr3 (270-326)||(26205834-26205890)
chr3 (270-326)||(26233879-26233935)
chr3 (490-538)||(26629186-26629234)
chr3 (191-231)||(27459806-27459846)
chr3 (191-227)||(27919476-27919512)
chr3 (424-472)||(28149203-28149251)
chr3 (200-280)||(28160356-28160436)
[»] chr2 (5 HSPs)
chr2 (4-157)||(8020551-8020707)
chr2 (418-506)||(8020711-8020799)
chr2 (32-157)||(22964958-22965083)
chr2 (345-396)||(22392469-22392520)
chr2 (42-157)||(22399468-22399583)
[»] chr7 (1 HSPs)
chr7 (200-342)||(8692895-8693037)
[»] scaffold0257 (3 HSPs)
scaffold0257 (198-335)||(18459-18596)
scaffold0257 (478-517)||(18697-18736)
scaffold0257 (426-472)||(18626-18672)
[»] chr4 (3 HSPs)
chr4 (4-55)||(18010730-18010780)
chr4 (478-518)||(9328780-9328820)
chr4 (478-518)||(9382557-9382597)
[»] scaffold1142 (2 HSPs)
scaffold1142 (345-396)||(1332-1383)
scaffold1142 (255-329)||(1208-1286)
[»] scaffold0043 (1 HSPs)
scaffold0043 (345-396)||(53891-53942)


Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 79)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 7 - 557
Target Start/End: Original strand, 28150871 - 28151415
Alignment:
7 aagaaatggaacaaacactagagacagagcaggaatttgttgaaaatgtccctcatcaagagatgccatcagtagcaataataccaacaaattcaaaagt 106  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
28150871 aagaaatggaacaaacactagagacaaagcatgaatttgttgaaaatgttcctcaacaagagatgccatcagtagcaataataccaacaaattcaaaagt 28150970  T
107 aatttgaaggccatgtgaaaatcacttggataaccctctccaaatatatacgtatacatattcaatattagtctagtaatgaaataattcatatgttctt 206  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||    
28150971 aatttgaaggccatgtgaaaatcacttggatattcctctccaaatatata------catattcaatattagtctagtaatgaaataattcatatgttctt 28151064  T
207 actacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28151065 actacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatag 28151164  T
307 taccacctcatcgtgcatataaatctaaaaaagaaacgttaaaaatatgttgcaactaatttacattttcatgttatgcaatcagttggaagcatcaact 406  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28151165 taccacctcattgtgcatataaatctaaaaaagaaacgttaaaaatatgttgcaactaatttacattttcatgttatgcaatcagttggaagcatcaact 28151264  T
407 ttgtcgaccattttcttgtattctttttcacactttgtcattacagaaattgaattatactacaatattgacaggttagcgaaataagtgttgaagaagg 506  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28151265 ttgtcgaccattttcttgtattctttttcacactttgtcagtacagaaattgaattatactacaatattgacaggttagcgaaataagtgttgaagaagg 28151364  T
507 aactacatcagctaatgccaagacaaaaacatcttcacaggtcttcttctt 557  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
28151365 aactacatcagctaatgccaagacaaaaacatcttcacaggtcttcttctt 28151415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 28003114 - 28003512
Alignment:
1 tgtagaaagaaatggaacaaacactagagacagagcaggaatttgttgaaaatgtccctcatcaagagatgccatcagtagcaataataccaacaaattc 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
28003114 tgtagaaagaaatggaacaaacactagagacagagcatgaatttgttgaaaatgtccctcatcaagagatgccatcagtagcaataaaaccaacaaattc 28003213  T
101 aaaagtaatttgaaggccatgtgaaaatcacttggataaccctctccaaatatatacgtatacatattcaatattagtctagtaatgaaataattcatat 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||    
28003214 aaaagtaatttgaaggccatgtgaaaatcacttggataatcctctcccaatatatacgtatacatattcaatattagtctagtaacgaactaattaatat 28003313  T
201 gttcttactac---aggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataat 297  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
28003314 gttcttactacaggaggagttgatgaatgaacaagaaatggagcaaaaacgtctacttggagaaactgatgctaccgtcaaaccttctcaagaaaataat 28003413  T
298 gtaatatagtaccacctcatcgtgcatataaatctaaaaaagaaacgttaaaaatatgttgcaactaatttacattttcatgttatgcaatcagttgga 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
28003414 gtaatatagtaccacctcatcgtgcatataaatctaaaaaagaaacgttaaaaatatgttgcaagtaatttacattttcatgttatgcaatcagttgga 28003512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 159 - 396
Target Start/End: Original strand, 27979557 - 27979794
Alignment:
159 tatacatattcaatattagtctagtaatgaaataattcatatgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtgga 258  Q
    |||||||||||  ||||||||||||||   | ||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||| || ||||    
27979557 tatacatattcgttattagtctagtaaaagactaattcatatgttcttattacaggagttgatggatgaacaacaaatggagcaacaacgtccacttgga 27979656  T
259 gaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatcgtgcatataaatctaaaaaagaaacgttaaaaatatgttg 358  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||    
27979657 gaaactgatgctaccgtcaaaccttctccagaaaataatgtaatatagtaccacctcattgtgaatataaagctaaaaaagaaacattaaaaatatgttg 27979756  T
359 caactaatttacattttcatgttatgcaatcagttgga 396  Q
    |||||||||||||||||| |||||||||||||||||||    
27979757 caactaatttacattttcttgttatgcaatcagttgga 27979794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 245 - 396
Target Start/End: Original strand, 27919515 - 27919666
Alignment:
245 aacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatcgtgcatataaatctaaaaaagaaacg 344  Q
    |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||     
27919515 aacgtccacttggagaaattgatactaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcattgtgaatataaagctaaaaaagaaaca 27919614  T
345 ttaaaaatatgttgcaactaatttacattttcatgttatgcaatcagttgga 396  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
27919615 ttaaaaatatgttgcaactaatttacattttcttgttatgcaatcagttgga 27919666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 255 - 396
Target Start/End: Original strand, 28036614 - 28036755
Alignment:
255 tggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatcgtgcatataaatctaaaaaagaaacgttaaaaatat 354  Q
    |||||||| |||||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||| ||||||||||    
28036614 tggagaaactgatgctaccgtcaaagcttctccagaaaataacgtaatatagtaccacctcattgtgcatataaagctaaaaatgaaacattaaaaatat 28036713  T
355 gttgcaactaatttacattttcatgttatgcaatcagttgga 396  Q
    | ||||||||||||||||||||||||||||||||||||||||    
28036714 gatgcaactaatttacattttcatgttatgcaatcagttgga 28036755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 27919307 - 27919414
Alignment:
4 agaaagaaatggaacaaacactagagacagagcaggaatttgttgaaaatgtccctcatcaagagatgccatcagtagcaataataccaacaaattcaaa 103  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| |    
27919307 agaaagaaatagaacaaacactagagacagagcatgaatttgttgaaaatgttcctcaacaaaagatgccatcagtagcaataataccaacaaattcaga 27919406  T
104 agtaattt 111  Q
    ||||||||    
27919407 agtaattt 27919414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 191 - 340
Target Start/End: Original strand, 11420146 - 11420295
Alignment:
191 taattcatatgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaaga 290  Q
    |||||||||||||| || |||||||||||||||||||||||  |||||||||| |||||| || ||| |||| ||||||||||||||||||||  || ||    
11420146 taattcatatgttcatattacaggagttgatgaatgaacaaccaatggagcaacaacgtccacttggtgaaactgatgctaccgtcaaacctttgcagga 11420245  T
291 aaataatgtaatatagtaccacctcatcgtgcatataaatctaaaaaaga 340  Q
    |||||  |||||||||||||| ||||| ||||||||||| ||||||||||    
11420246 aaatacagtaatatagtaccatctcattgtgcatataaaactaaaaaaga 11420295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 27979427 - 27979538
Alignment:
4 agaaagaaatggaacaaacactagagacagagcaggaatttgttgaaaatgtccctcatcaagagatgccatcagtag---caataataccaacaaattc 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||   ||||| |||||||||||||    
27979427 agaaagaaatggaacaaacactagagacagagcatgaatttgttgaaaatgttcctcaacaagacatgccatcagtagcaacaatattaccaacaaattc 27979526  T
101 aaaagtaatttg 112  Q
     |||||||||||    
27979527 gaaagtaatttg 27979538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 11419936 - 11420043
Alignment:
4 agaaagaaatggaacaaacactagagacagagcaggaatttgttgaaaatgtccctcatcaagagatgccatcagtagcaataataccaacaaattcaaa 103  Q
    |||||||||| | ||||||||||| ||||||||| | ||||||||||||||| |||| ||| ||||| |||||| ||||||||||||||||||||||| |    
11419936 agaaagaaattggacaaacactagtgacagagcatggatttgttgaaaatgttcctcgtcatgagattccatcaatagcaataataccaacaaattcaga 11420035  T
104 agtaattt 111  Q
    ||||||||    
11420036 agtaattt 11420043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 28036380 - 28036490
Alignment:
12 atggaacaaacactagagacagagcaggaatttgttgaaaatgtccctcatcaagagatgccatcagtagcaataataccaacaaattcaaaagtaattt 111  Q
    |||||| ||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||| || |||||||| |||| |||||| ||    
28036380 atggaagaaacactagagacagagcatgaatttgttgaaaatttccctcgtgaagagatgccatcagtagcaaaaaaaccaacaagttcagaagtaagtt 28036479  T
112 gaaggccatgt 122  Q
      |||||||||    
28036480 acaggccatgt 28036490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 200 - 342
Target Start/End: Original strand, 28184908 - 28185050
Alignment:
200 tgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataatgt 299  Q
    |||||||  |||||||||||||||||||||||  |||||||||  ||||||||| |||||||  |||| ||||||||||||||||||| | |||| ||||    
28184908 tgttcttgttacaggagttgatgaatgaacaatcaatggagcagcaacgtctacttggagaacctgatactaccgtcaaaccttctcaggtaaatcatgt 28185007  T
300 aatatagtaccacctcatcgtgcatataaatctaaaaaagaaa 342  Q
    ||| | |||||||| | | ||||||||||| ||||||| ||||    
28185008 aatgtcgtaccaccgcgttgtgcatataaagctaaaaatgaaa 28185050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 27460056 - 27459938
Alignment:
4 agaaagaaatggaacaaacactagagacagagcaggaatttgttgaaaatgtccctcatcaagagatgccatcagtagcaataataccaacaaattcaaa 103  Q
    ||||||||||||||||| |||| ||||||| ||| ||||||| ||||||||| |||||  | ||||||||||||||||||| |||||||||| | ||| |    
27460056 agaaagaaatggaacaaccacttgagacagggcatgaatttgatgaaaatgttcctcaaaaggagatgccatcagtagcaacaataccaacagactcaga 27459957  T
104 agtaatttgaaggccatgt 122  Q
    |||||| || |||||||||    
27459956 agtaatgtgcaggccatgt 27459938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 198 - 335
Target Start/End: Original strand, 28149039 - 28149176
Alignment:
198 tatgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataat 297  Q
    |||||||||  ||||||||||||||||||||| |  |||||| ||| |||||  || |||||||| |||| || |||||||||||||||| | |||| ||    
28149039 tatgttcttgttacaggagttgatgaatgaacgatcaatggaccaacaacgttcacttggagaaactgatactgccgtcaaaccttctcaggtaaatcat 28149138  T
298 gtaatatagtaccacctcatcgtgcatataaatctaaa 335  Q
    ||||||| |||||||| ||| ||||||||||| |||||    
28149139 gtaatatcgtaccaccgcattgtgcatataaagctaaa 28149176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 255 - 343
Target Start/End: Complemental strand, 17745394 - 17745306
Alignment:
255 tggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatcgtgcatataaatctaaaaaagaaac 343  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||  ||||||  ||||||| |||||    
17745394 tggagaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatatagtaccacctcattgtttatataagactaaaaatgaaac 17745306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 255 - 343
Target Start/End: Complemental strand, 19046714 - 19046626
Alignment:
255 tggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatcgtgcatataaatctaaaaaagaaac 343  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||  ||||||  ||||||| |||||    
19046714 tggagaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatatagtaccacctcattgtttatataagactaaaaatgaaac 19046626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 17745638 - 17745552
Alignment:
4 agaaagaaatggaacaaacactagagacagagcaggaatttgttgaaaatgtccctcatcaagagatgccatcagtagcaataatac 90  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||  | ||| ||||||||||||||| ||||||    
17745638 agaaagaaatggaacaaacaatagagacagagcatgaatttgttgaaaatgttcctcgacgagaaatgccatcagtagcagtaatac 17745552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 19046958 - 19046872
Alignment:
4 agaaagaaatggaacaaacactagagacagagcaggaatttgttgaaaatgtccctcatcaagagatgccatcagtagcaataatac 90  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||  | ||| ||||||||||||||| ||||||    
19046958 agaaagaaatggaacaaacaatagagacagagcatgaatttgttgaaaatgttcctcgacgagaaatgccatcagtagcagtaatac 19046872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 209 - 329
Target Start/End: Complemental strand, 28509890 - 28509770
Alignment:
209 tacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagta 308  Q
    |||||||||||||||||||||||   ||||||||| ||||||||| |||||||   ||| || |||||||||||||||| | |||| | ||||||| |||    
28509890 tacaggagttgatgaatgaacaatcgatggagcaacaacgtctacttggagaagccgattctgccgtcaaaccttctcaggtaaatcaagtaatatcgta 28509791  T
309 ccacctcatcgtgcatataaa 329  Q
    ||||| ||| |||||||||||    
28509790 ccaccgcattgtgcatataaa 28509770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 26114127 - 26114053
Alignment:
255 tggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatcgtgcatataaa 329  Q
    |||||||| |||| ||||| ||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||    
26114127 tggagaaactgatactaccatcaaaccttctcaagaagataatgtaatatagtaccatctcattgtgcatataaa 26114053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 28480707 - 28480591
Alignment:
209 tacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagta 308  Q
    ||||||||||||||||| |||||   ||||||||| ||||||||| |||||||   ||| || |||||||||||||||| | |||| ||||||||| |||    
28480707 tacaggagttgatgaatcaacaatctatggagcaacaacgtctacttggagaagccgatactcccgtcaaaccttctcaggtaaatcatgtaatatcgta 28480608  T
309 ccacctcatcgtgcata 325  Q
    ||||| ||| |||||||    
28480607 ccaccgcattgtgcata 28480591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 478 - 529
Target Start/End: Original strand, 28083122 - 28083173
Alignment:
478 caggttagcgaaataagtgttgaagaaggaactacatcagctaatgccaaga 529  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
28083122 caggttagtgaaataagtgttgaagaaggaactacatcagctaatgccaaga 28083173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 478 - 529
Target Start/End: Original strand, 28135494 - 28135545
Alignment:
478 caggttagcgaaataagtgttgaagaaggaactacatcagctaatgccaaga 529  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
28135494 caggttagtgaaataagtgttgaagaaggaactacatcagctaatgccaaga 28135545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 487 - 536
Target Start/End: Complemental strand, 8539670 - 8539621
Alignment:
487 gaaataagtgttgaagaaggaactacatcagctaatgccaagacaaaaac 536  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
8539670 gaaataagtgttgaagaaggaactacatcagctaatgccaatacaaaaac 8539621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 342
Target Start/End: Original strand, 28082856 - 28082988
Alignment:
210 acaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtac 309  Q
    ||||||||||||||||||||||  |||||| ||| ||||||||  |||||||| |||| || |||||||||||| ||| | |||| ||| |||||  |||    
28082856 acaggagttgatgaatgaacaaacaatggaccaacaacgtctagttggagaaactgatactgccgtcaaaccttttcaggtaaatcatgcaatatcatac 28082955  T
310 cacctcatcgtgcatataaatctaaaaaagaaa 342  Q
    ||   ||| ||||||||||| ||||||| ||||    
28082956 caatacattgtgcatataaagctaaaaatgaaa 28082988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 27459676 - 27459625
Alignment:
345 ttaaaaatatgttgcaactaatttacattttcatgttatgcaatcagttgga 396  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
27459676 ttaaaaataagttgcaactaatttacattttcatgttatgcaagcagttgga 27459625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 259 - 329
Target Start/End: Complemental strand, 26128879 - 26128809
Alignment:
259 gaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatcgtgcatataaa 329  Q
    |||| |||| ||||| ||||||||||||| ||| ||||||||||||||||||| ||||||||||| |||||    
26128879 gaaactgatactaccatcaaaccttctcaggaagataatgtaatatagtaccatctcatcgtgcaaataaa 26128809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 478 - 539
Target Start/End: Complemental strand, 18079199 - 18079138
Alignment:
478 caggttagcgaaataagtgttgaagaaggaactacatcagctaatgccaagacaaaaacatc 539  Q
    ||||||| |||||||||||||||| |||||||| |||| |||||||||||||||| ||||||    
18079199 caggttaacgaaataagtgttgaaaaaggaacttcatcggctaatgccaagacaataacatc 18079138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 28134742 - 28134831
Alignment:
198 tatgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctca 287  Q
    |||||||||  |||||||||||||||||||||||  |||||| ||| |||||  || |||||||| |||| || ||||||||||||||||    
28134742 tatgttcttgttacaggagttgatgaatgaacaatcaatggaccaacaacgttcacttggagaaactgatacttccgtcaaaccttctca 28134831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 27459794 - 27459738
Alignment:
258 agaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtaccacct 314  Q
    ||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||||    
27459794 agaaactgatgctagcgtcaaaccttctcaggaaaataatgtaatataataccacct 27459738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 529
Target Start/End: Complemental strand, 17745033 - 17744990
Alignment:
486 cgaaataagtgttgaagaaggaactacatcagctaatgccaaga 529  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
17745033 cgaaataagtgttgaagaaggaaccacatcagctaatgccaaga 17744990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 486 - 529
Target Start/End: Complemental strand, 19046353 - 19046310
Alignment:
486 cgaaataagtgttgaagaaggaactacatcagctaatgccaaga 529  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
19046353 cgaaataagtgttgaagaaggaaccacatcagctaatgccaaga 19046310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 342
Target Start/End: Original strand, 28054572 - 28054659
Alignment:
255 tggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatcgtgcatataaatctaaaaaagaaa 342  Q
    ||||||||||||| || |||||||||||||||| | |||| ||||| ||| |||||||  |||||||||||||||  |||||| ||||    
28054572 tggagaaattgatactgccgtcaaaccttctcaggtaaatcatgtattattgtaccactgcatcgtgcatataaagataaaaatgaaa 28054659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 478 - 529
Target Start/End: Original strand, 28055917 - 28055968
Alignment:
478 caggttagcgaaataagtgttgaagaaggaactacatcagctaatgccaaga 529  Q
    ||||||||||||||||||||| |||||||||||||| || ||||||||||||    
28055917 caggttagcgaaataagtgttcaagaaggaactacaacatctaatgccaaga 28055968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 342
Target Start/End: Original strand, 28064997 - 28065084
Alignment:
255 tggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatcgtgcatataaatctaaaaaagaaa 342  Q
    ||||||||||||| || |||||||||||||||| | |||| ||||| ||| |||||||  |||||||||||||||  |||||| ||||    
28064997 tggagaaattgatactgccgtcaaaccttctcaggtaaatcatgtattattgtaccactgcatcgtgcatataaagataaaaatgaaa 28065084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 478 - 529
Target Start/End: Original strand, 28066342 - 28066393
Alignment:
478 caggttagcgaaataagtgttgaagaaggaactacatcagctaatgccaaga 529  Q
    ||||||||||||||||||||| |||||||||||||| || ||||||||||||    
28066342 caggttagcgaaataagtgttcaagaaggaactacaacatctaatgccaaga 28066393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 478 - 529
Target Start/End: Original strand, 28185312 - 28185363
Alignment:
478 caggttagcgaaataagtgttgaagaaggaactacatcagctaatgccaaga 529  Q
    ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||    
28185312 caggttagcgaaataagtgttcaagaaggaactacttcatctaatgccaaga 28185363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 395
Target Start/End: Complemental strand, 18025315 - 18025265
Alignment:
345 ttaaaaatatgttgcaactaatttacattttcatgttatgcaatcagttgg 395  Q
    |||||| |||| ||||||||||||||||||||||| |||||||||||||||    
18025315 ttaaaactatgctgcaactaatttacattttcatgctatgcaatcagttgg 18025265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 8539883 - 8539835
Alignment:
348 aaaatatgttgcaactaatttacattttcatgttatgcaatcagttgga 396  Q
    ||||||||  ||||||||||||||||||||| |||||||||||||||||    
8539883 aaaatatgacgcaactaatttacattttcattttatgcaatcagttgga 8539835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 488 - 536
Target Start/End: Original strand, 27919871 - 27919919
Alignment:
488 aaataagtgttgaagaaggaactacatcagctaatgccaagacaaaaac 536  Q
    ||||| |||||||||||||||  ||||||||||||||||||||||||||    
27919871 aaatatgtgttgaagaaggaatcacatcagctaatgccaagacaaaaac 27919919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 488 - 539
Target Start/End: Complemental strand, 26128007 - 26127956
Alignment:
488 aaataagtgttgaagaaggaactacatcagctaatgccaagacaaaaacatc 539  Q
    |||||| |||||||||||||||| |||||| |||||||||||||| ||||||    
26128007 aaataaatgttgaagaaggaactgcatcagataatgccaagacaataacatc 26127956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 488 - 539
Target Start/End: Complemental strand, 26178057 - 26178006
Alignment:
488 aaataagtgttgaagaaggaactacatcagctaatgccaagacaaaaacatc 539  Q
    |||||| |||||||||||||||| |||||| |||||||||||||| ||||||    
26178057 aaataaatgttgaagaaggaactgcatcagataatgccaagacaataacatc 26178006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 27390884 - 27390833
Alignment:
345 ttaaaaatatgttgcaactaatttacattttcatgttatgcaatcagttgga 396  Q
    |||| |||||| ||||||||||||| |||||||||||||||||| |||||||    
27390884 ttaataatatgctgcaactaatttaaattttcatgttatgcaattagttgga 27390833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 486 - 537
Target Start/End: Original strand, 28149284 - 28149335
Alignment:
486 cgaaataagtgttgaagaaggaactacatcagctaatgccaagacaaaaaca 537  Q
    ||||||||||| |||||||||||| || ||||||||||||||||||| ||||    
28149284 cgaaataagtgctgaagaaggaaccacgtcagctaatgccaagacaataaca 28149335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 478 - 512
Target Start/End: Original strand, 28161470 - 28161504
Alignment:
478 caggttagcgaaataagtgttgaagaaggaactac 512  Q
    |||||||||||||||||||||||||||||||||||    
28161470 caggttagcgaaataagtgttgaagaaggaactac 28161504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 11420332 - 11420365
Alignment:
345 ttaaaaatatgttgcaactaatttacattttcat 378  Q
    ||||||||||||||||||||||||||||||||||    
11420332 ttaaaaatatgttgcaactaatttacattttcat 11420365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 396
Target Start/End: Original strand, 28005112 - 28005161
Alignment:
347 aaaaatatgttgcaactaatttacattttcatgttatgcaatcagttgga 396  Q
    |||||| || ||||||||||||||||||||||| |||||||| |||||||    
28005112 aaaaatctgctgcaactaatttacattttcatgctatgcaattagttgga 28005161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 26202577 - 26202529
Alignment:
255 tggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaata 303  Q
    |||||||| |||| ||||| ||||||||||||||||| |||||||||||    
26202577 tggagaaactgatactaccatcaaaccttctcaagaatataatgtaata 26202529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 472
Target Start/End: Original strand, 28054955 - 28055011
Alignment:
416 attttcttgtattctttttcacactttgtcattacagaaattgaattatactacaat 472  Q
    |||| |||||||| ||||| ||||||||||| | ||| |||||||||||||||||||    
28054955 atttgcttgtattttttttaacactttgtcaatgcaggaattgaattatactacaat 28055011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 472
Target Start/End: Original strand, 28065380 - 28065436
Alignment:
416 attttcttgtattctttttcacactttgtcattacagaaattgaattatactacaat 472  Q
    |||| |||||||| ||||| ||||||||||| | ||| |||||||||||||||||||    
28065380 atttgcttgtattttttttaacactttgtcaatgcaggaattgaattatactacaat 28065436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 387
Target Start/End: Complemental strand, 18077380 - 18077341
Alignment:
348 aaaatatgttgcaactaatttacattttcatgttatgcaa 387  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
18077380 aaaatatgttgcaactaatttacgttttcattttatgcaa 18077341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 19476136 - 19476187
Alignment:
345 ttaaaaatatgttgcaactaatttacattttcatgttatgcaatcagttgga 396  Q
    ||||||||||||| |||||||||||||||||| || |||| ||| |||||||    
19476136 ttaaaaatatgttacaactaatttacattttcttgctatggaattagttgga 19476187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 539
Target Start/End: Complemental strand, 26111005 - 26110962
Alignment:
496 gttgaagaaggaactacatcagctaatgccaagacaaaaacatc 539  Q
    ||||||||||||| |||||||||||||||||||| || ||||||    
26111005 gttgaagaaggaaatacatcagctaatgccaagaaaataacatc 26110962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 26179609 - 26179558
Alignment:
345 ttaaaaatatgttgcaactaatttacattttcatgttatgcaatcagttgga 396  Q
    ||||||||||| ||||||||| |||||||||||||  ||||||| |||||||    
26179609 ttaaaaatatgctgcaactaacttacattttcatgcaatgcaattagttgga 26179558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 539
Target Start/End: Complemental strand, 26233351 - 26233308
Alignment:
496 gttgaagaaggaactacatcagctaatgccaagacaaaaacatc 539  Q
    ||||||||||||| |||||||||||||||||||| || ||||||    
26233351 gttgaagaaggaaatacatcagctaatgccaagaaaataacatc 26233308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 26236036 - 26235989
Alignment:
349 aaatatgttgcaactaatttacattttcatgttatgcaatcagttgga 396  Q
    ||||||| |||||||||||||||||||||||  ||||||| |||||||    
26236036 aaatatgctgcaactaatttacattttcatgcaatgcaattagttgga 26235989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 532
Target Start/End: Original strand, 27249808 - 27249843
Alignment:
497 ttgaagaaggaactacatcagctaatgccaagacaa 532  Q
    ||||||||||||| ||||||||||||||||||||||    
27249808 ttgaagaaggaaccacatcagctaatgccaagacaa 27249843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 27377540 - 27377591
Alignment:
345 ttaaaaatatgttgcaactaatttacattttcatgttatgcaatcagttgga 396  Q
    ||||||||||  ||||||||||||| ||||||||| |||||||| |||||||    
27377540 ttaaaaatattctgcaactaatttatattttcatgctatgcaattagttgga 27377591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 529
Target Start/End: Complemental strand, 28506945 - 28506894
Alignment:
478 caggttagcgaaataagtgttgaagaaggaactacatcagctaatgccaaga 529  Q
    |||||||| ||||||||||| ||| ||||  |||||||||||||||||||||    
28506945 caggttagtgaaataagtgtcgaaaaaggtgctacatcagctaatgccaaga 28506894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 379
Target Start/End: Complemental strand, 26111237 - 26111203
Alignment:
345 ttaaaaatatgttgcaactaatttacattttcatg 379  Q
    ||||||| |||||||||||||||||||||||||||    
26111237 ttaaaaacatgttgcaactaatttacattttcatg 26111203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 26129309 - 26129267
Alignment:
490 ataagtgttgaagaaggaactacatcagctaatgccaagacaa 532  Q
    |||| |||||||||||||||| ||||||||||||| |||||||    
26129309 ataaatgttgaagaaggaactgcatcagctaatgctaagacaa 26129267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 26139951 - 26139909
Alignment:
490 ataagtgttgaagaaggaactacatcagctaatgccaagacaa 532  Q
    |||| |||||||||||||| |||||||| ||||||||||||||    
26139951 ataaatgttgaagaaggaaatacatcagttaatgccaagacaa 26139909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 26179365 - 26179323
Alignment:
490 ataagtgttgaagaaggaactacatcagctaatgccaagacaa 532  Q
    |||| |||||||||||||||| |||||| ||||||||||||||    
26179365 ataaatgttgaagaaggaactgcatcagttaatgccaagacaa 26179323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #63
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 379
Target Start/End: Complemental strand, 26205520 - 26205486
Alignment:
345 ttaaaaatatgttgcaactaatttacattttcatg 379  Q
    ||||||| |||||||||||||||||||||||||||    
26205520 ttaaaaacatgttgcaactaatttacattttcatg 26205486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #64
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 379
Target Start/End: Complemental strand, 26233583 - 26233549
Alignment:
345 ttaaaaatatgttgcaactaatttacattttcatg 379  Q
    ||||||| |||||||||||||||||||||||||||    
26233583 ttaaaaacatgttgcaactaatttacattttcatg 26233549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #65
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 393
Target Start/End: Complemental strand, 26128252 - 26128207
Alignment:
348 aaaatatgttgcaactaatttacattttcatgttatgcaatcagtt 393  Q
    |||||||  ||||||||||||||||||||||| |||||||| ||||    
26128252 aaaatataatgcaactaatttacattttcatgctatgcaattagtt 26128207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #66
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 26129559 - 26129518
Alignment:
345 ttaaaaatatgttgcaactaatttacattttcatgttatgca 386  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||    
26129559 ttaaaaatatgctgcaactaaattacattttcatgctatgca 26129518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #67
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 393
Target Start/End: Complemental strand, 26178302 - 26178257
Alignment:
348 aaaatatgttgcaactaatttacattttcatgttatgcaatcagtt 393  Q
    |||||||  ||||||||||||||||||||||| |||||||| ||||    
26178302 aaaatataatgcaactaatttacattttcatgctatgcaattagtt 26178257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #68
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 529
Target Start/End: Complemental strand, 27459410 - 27459377
Alignment:
496 gttgaagaaggaactacatcagctaatgccaaga 529  Q
    |||||||||||||| |||||||||||||||||||    
27459410 gttgaagaaggaaccacatcagctaatgccaaga 27459377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #69
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 532
Target Start/End: Original strand, 28003718 - 28003763
Alignment:
487 gaaataagtgttgaagaaggaactacatcagctaatgccaagacaa 532  Q
    |||| |||||||||||| ||||  ||||||||||||||||||||||    
28003718 gaaaaaagtgttgaagatggaatcacatcagctaatgccaagacaa 28003763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #70
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 472
Target Start/End: Complemental strand, 8539756 - 8539704
Alignment:
420 tcttgtattctttttcacactttgtcattacagaaattgaattatactacaat 472  Q
    ||||||||||||||| |||||||  || | ||| |||||||||||||||||||    
8539756 tcttgtattctttttaacacttttccaatgcaggaattgaattatactacaat 8539704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #71
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 26111606 - 26111550
Alignment:
270 taccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatcgtgcatat 326  Q
    |||| ||||||||||||| ||| | ||||||||||||||||| |||||  |||||||    
26111606 taccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatat 26111550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #72
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 396
Target Start/End: Complemental strand, 26202139 - 26202091
Alignment:
348 aaaatatgttgcaactaatttacattttcatgttatgcaatcagttgga 396  Q
    |||||||  ||||||||||||||||||||||| |||||| |||| ||||    
26202139 aaaatataatgcaactaatttacattttcatgctatgcattcagctgga 26202091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #73
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 26205890 - 26205834
Alignment:
270 taccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatcgtgcatat 326  Q
    |||| ||||||||||||| ||| | ||||||||||||||||| |||||  |||||||    
26205890 taccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatat 26205834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #74
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 26233935 - 26233879
Alignment:
270 taccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatcgtgcatat 326  Q
    |||| ||||||||||||| ||| | ||||||||||||||||| |||||  |||||||    
26233935 taccatcaaaccttctcaggaagaaaatgtaatatagtaccatctcattatgcatat 26233879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #75
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 538
Target Start/End: Original strand, 26629186 - 26629234
Alignment:
490 ataagtgttgaagaaggaactacatcagctaatgccaagacaaaaacat 538  Q
    ||||| |||||||||||||  |||||||||||||||||| ||| |||||    
26629186 ataagcgttgaagaaggaaacacatcagctaatgccaagccaataacat 26629234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #76
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 27459846 - 27459806
Alignment:
191 taattcatatgttcttactacaggagttgatgaatgaacaa 231  Q
    |||||| |||||||||| |||||||||| ||||||||||||    
27459846 taattcgtatgttcttattacaggagttaatgaatgaacaa 27459806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #77
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 27919476 - 27919512
Alignment:
191 taattcatatgttcttactacaggagttgatgaatga 227  Q
    ||||||||||||||||| ||||||||||||| |||||    
27919476 taattcatatgttcttattacaggagttgataaatga 27919512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #78
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 472
Target Start/End: Original strand, 28149203 - 28149251
Alignment:
424 gtattctttttcacactttgtcattacagaaattgaattatactacaat 472  Q
    ||||||||||  ||||||||||| | ||| |||||||||||||||||||    
28149203 gtattcttttgaacactttgtcaatgcaggaattgaattatactacaat 28149251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #79
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 28160356 - 28160436
Alignment:
200 tgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaac 280  Q
    |||||||  |||||||||||||||||||||||   ||||| ||  ||||||||| |||||||  |||| ||||| ||||||    
28160356 tgttcttgttacaggagttgatgaatgaacaatcgatggaacagcaacgtctacttggagaacctgatactaccatcaaac 28160436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 4e-58; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 8020551 - 8020707
Alignment:
4 agaaagaaatggaacaaacactagagacagagcaggaatttgttgaaaatgtccctcatcaagagatgccatcagtag---caataataccaacaaattc 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| |||||||||||||||||||   ||||| |||||||||||||    
8020551 agaaagaaatggaacaaacactagagacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaacaatattaccaacaaattc 8020650  T
101 aaaagtaatttgaaggccatgtgaaaatcacttggataaccctctccaaatatatac 157  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
8020651 aaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatac 8020707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 418 - 506
Target Start/End: Original strand, 8020711 - 8020799
Alignment:
418 tttcttgtattctttttcacactttgtcattacagaaattgaattatactacaatattgacaggttagcgaaataagtgttgaagaagg 506  Q
    ||||||||||||||||| ||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
8020711 tttcttgtattcttttttacactttgtcagtaccggaattgaattataccacaatattgacaggttagcgaaataagtgttgaagaagg 8020799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 157
Target Start/End: Original strand, 22964958 - 22965083
Alignment:
32 agagcaggaatttgttgaaaatgtccctcatcaagagatgccatcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcac 131  Q
    |||||| || |||||||||||||| | | ||  |||||| |||||| |||   || |||||||||||||| ||||||| |||||||| ||| ||| ||||    
22964958 agagcacgagtttgttgaaaatgttcttgatttagagataccatcattagtgttattaccaacaaattcagaagtaatatgaaggccgtgtcaaattcac 22965057  T
132 ttggataaccctctccaaatatatac 157  Q
    || ||||  |||||||||||||||||    
22965058 ttcgatattcctctccaaatatatac 22965083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 22392469 - 22392520
Alignment:
345 ttaaaaatatgttgcaactaatttacattttcatgttatgcaatcagttgga 396  Q
    ||||||||||  ||||||||||||||||||||||| || |||||||||||||    
22392469 ttaaaaatattctgcaactaatttacattttcatgctacgcaatcagttgga 22392520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 22399468 - 22399583
Alignment:
42 tttgttgaaaatgtccctcatcaagagatgccatcagtagcaataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggataacc 141  Q
    |||||||||||||| | | ||  |||||| |||||| |||   || |||||||||||||| ||||||| |||||||| ||| ||| ||||||  |||  |    
22399468 tttgttgaaaatgttcttgatttagagataccatcattagtgttattaccaacaaattcagaagtaatatgaaggccgtgtcaaattcacttctatattc 22399567  T
142 ctctccaaatatatac 157  Q
    ||||||||||||||||    
22399568 ctctccaaatatatac 22399583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 200 - 342
Target Start/End: Complemental strand, 8693037 - 8692895
Alignment:
200 tgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataatgt 299  Q
    |||||||  ||||||| |||||||||||||||   |||||  || |||||| || |||||||| ||||  | ||| |||||||||||| | |||| ||||    
8693037 tgttcttgttacaggaattgatgaatgaacaatcgatggacaaacaacgtccacttggagaaactgatattgccggcaaaccttctcaggtaaatcatgt 8692938  T
300 aatatagtaccacctcatcgtgcatataaatctaaaaaagaaa 342  Q
    ||||| |||||||  ||| ||||||||||| ||||||||||||    
8692937 aatatcgtaccactgcattgtgcatataaagctaaaaaagaaa 8692895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 198 - 335
Target Start/End: Original strand, 18459 - 18596
Alignment:
198 tatgttcttactacaggagttgatgaatgaacaagaaatggagcaaaaacgtctacgtggagaaattgatgctaccgtcaaaccttctcaagaaaataat 297  Q
    |||||||||  |||||||||||||||||||| ||   ||| ||||| |||||| || |||||||| ||||  | |||||||||||||||| | |||| ||    
18459 tatgttcttgttacaggagttgatgaatgaaaaatcgatgcagcaacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcat 18558  T
298 gtaatatagtaccacctcatcgtgcatataaatctaaa 335  Q
    |||||||  ||| ||| ||| ||||||||||| |||||    
18559 gtaatatcctacaaccgcattgtgcatataaagctaaa 18596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 517
Target Start/End: Original strand, 18697 - 18736
Alignment:
478 caggttagcgaaataagtgttgaagaaggaactacatcag 517  Q
    |||||||| ||||||||||||||| |||||||||||||||    
18697 caggttagtgaaataagtgttgaaaaaggaactacatcag 18736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 472
Target Start/End: Original strand, 18626 - 18672
Alignment:
426 attctttttcacactttgtcattacagaaattgaattatactacaat 472  Q
    ||||||||| ||||||||||| | ||| |||||||||||||||||||    
18626 attctttttgacactttgtcaatgcaggaattgaattatactacaat 18672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 18010730 - 18010780
Alignment:
4 agaaagaaatggaacaaacactagagacagagcaggaatttgttgaaaatgt 55  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||    
18010730 agaaagaaatggaacaaacactagagacagagcatgaatttg-tgaaaatgt 18010780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 518
Target Start/End: Complemental strand, 9328820 - 9328780
Alignment:
478 caggttagcgaaataagtgttgaagaaggaactacatcagc 518  Q
    ||||||||||||||||||||||||||||||||| |||||||    
9328820 caggttagcgaaataagtgttgaagaaggaactgcatcagc 9328780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 518
Target Start/End: Complemental strand, 9382597 - 9382557
Alignment:
478 caggttagcgaaataagtgttgaagaaggaactacatcagc 518  Q
    ||||||||||||||||||||||||||||||||| |||||||    
9382597 caggttagcgaaataagtgttgaagaaggaactgcatcagc 9382557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Original strand, 1332 - 1383
Alignment:
345 ttaaaaatatgttgcaactaatttacattttcatgttatgcaatcagttgga 396  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||| |||||||    
1332 ttaaaaatatgctgcaactaatttacatttttatggtatgcaattagttgga 1383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1142; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 329
Target Start/End: Original strand, 1208 - 1286
Alignment:
255 tggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatat----agtaccacctcatcgtgcatataaa 329  Q
    ||||||| ||||||||||| ||||||||| ||  |||| |||||||||||    ||||| ||||||| |||||||||||    
1208 tggagaacttgatgctaccatcaaaccttgtctggaaactaatgtaatatagccagtactacctcattgtgcatataaa 1286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 53942 - 53891
Alignment:
345 ttaaaaatatgttgcaactaatttacattttcatgttatgcaatcagttgga 396  Q
    ||||||||||  ||||||||||||||||||||||| ||||| ||||||||||    
53942 ttaaaaatattgtgcaactaatttacattttcatgctatgctatcagttgga 53891  T

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