View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4539-Insertion-1 (Length: 554)

Name: NF4539-Insertion-1
Description: NF4539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4539-Insertion-1
NF4539-Insertion-1
[»] chr8 (12 HSPs)
chr8 (9-554)||(15723046-15723584)
chr8 (296-432)||(15806132-15806268)
chr8 (298-436)||(15712591-15712729)
chr8 (296-428)||(15814026-15814158)
chr8 (296-436)||(15704548-15704688)
chr8 (296-386)||(15792401-15792491)
chr8 (296-430)||(15800583-15800717)
chr8 (296-417)||(15698169-15698290)
chr8 (9-56)||(15698019-15698066)
chr8 (9-56)||(15704406-15704453)
chr8 (13-58)||(15712448-15712493)
chr8 (9-57)||(15806011-15806059)
[»] chr3 (3 HSPs)
chr3 (296-399)||(3079132-3079235)
chr3 (296-399)||(4549722-4549825)
chr3 (296-399)||(3093618-3093721)


Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 9 - 554
Target Start/End: Original strand, 15723046 - 15723584
Alignment:
Q  9 ctgcaagcctttttaccgcaatttctgtcccgtctggtaaagtaccctgacagaaagatggaaaagaaagtaaagagaacatgagtatgtcaaactttaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||    
T  15723046 ctgcaagcctttttaccgcaatttctgtcccgtctggtaaagtaccctgacaaaaaaatggaaaagaaagtaaagagaacatgagtatgtcaaacttgaa 15723145  T
Q  109 aaggaaaactatgtattcatcggtaatatacagatcttgatttgttgttgtagaaaaagaacgtgtttacacatagtatgggttttcggacgttaatatg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||      ||| || |||||||||| | |||||| ||||||||||||    
T  15723146 aaggaaaactatgtattcatcggtaatatacagatcttgatttgtagttgcagaa------cgt-ttgacacatagtaagcgttttctgacgttaatatg 15723238  T
Q  209 agttcagattatacgataacatattcaactttaaaagatcttggccgttagtatgagattgcacagtttagattgaaaactggcgatataccttgtaaac 308  Q
    |||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  15723239 agttcagattgtacgataacatattcaactttaaaatatcttggctgttagtatgagattgcacggtttagattgaaaactggcgatgtaccttgtaaac 15723338  T
Q  309 agggccaaatccaccttctcctaatttagacgactctgaaaaataattagtgctctgatgaattactgttaaagggattattggaaggtctccatccaat 408  Q
    |||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15723339 agggccaaatccaccttcccctagtttagacgactcggaaaaataattagtgctctgatgaattactgttaaagggattattggaaggtctccatccaat 15723438  T
Q  409 gaatcatctctttgaacatgatcatgaattgcattaggaatgttcttgaatatcaatccacctaccaaagaaacttgtaaggataattcgtgaaataacc 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15723439 gaatcatctctttgaacatgatcatgaattgcattaggaatgttcttgaatatcaatccacctaccaaagaaacttgtaaggataattcgtgacataacc 15723538  T
Q  509 ttacaaaaatttcaacatgtatgtaagttgttacaattaccttttc 554  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||    
T  15723539 ttacagaaatttaaacatgtatgtaagttgttacaattaccttttc 15723584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 296 - 432
Target Start/End: Original strand, 15806132 - 15806268
Alignment:
Q  296 ataccttgtaaacagggccaaatccaccttctcctaatttagacgactctgaaaaataattagtgctctgatgaattactgttaaagggattattggaag 395  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||  |||  ||| ||||||||  ||||||| ||||| |||||    
T  15806132 ataccttgtaaacagggccaaatccaccttctcctaatttagatgactctgaaaagttatccgtggcctgttgaattacacttaaaggaattataggaag 15806231  T
Q  396 gtctccatccaatgaatcatctctttgaacatgatca 432  Q
    |||||||| ||||||||||||||||||||||||||||    
T  15806232 gtctccatgcaatgaatcatctctttgaacatgatca 15806268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 298 - 436
Target Start/End: Original strand, 15712591 - 15712729
Alignment:
Q  298 accttgtaaacagggccaaatccaccttctcctaatttagacgactctgaaaaataattagtgctctgatgaattactgttaaagggattattggaaggt 397  Q
    |||||||||||||  ||||||||||||| |||||||||||  ||||||||||| |||| |||||| || |||| |||  |||||||||||||||||||||    
T  15712591 accttgtaaacagatccaaatccaccttgtcctaatttagttgactctgaaaagtaatcagtgctttgttgaagtacaattaaagggattattggaaggt 15712690  T
Q  398 ctccatccaatgaatcatctctttgaacatgatcatgaa 436  Q
    |||||| |||||||||||||||| |||||||| ||||||    
T  15712691 ctccattcaatgaatcatctcttagaacatgaccatgaa 15712729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 296 - 428
Target Start/End: Original strand, 15814026 - 15814158
Alignment:
Q  296 ataccttgtaaacagggccaaatccaccttctcctaatttagacgactctgaaaaataattagtgctctgatgaattactgttaaagggattattggaag 395  Q
    ||||||||||||| ||||||||||||||||||||||||||| | ||||| ||||| | ||  ||||| || |||||||| |||||||||||| | |||||    
T  15814026 ataccttgtaaactgggccaaatccaccttctcctaatttaaatgactccgaaaagttatcggtgctttgttgaattacagttaaagggattgtaggaag 15814125  T
Q  396 gtctccatccaatgaatcatctctttgaacatg 428  Q
     |||||||  |||||||| |||||| |||||||    
T  15814126 atctccattgaatgaatcctctcttggaacatg 15814158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 436
Target Start/End: Original strand, 15704548 - 15704688
Alignment:
Q  296 ataccttgtaaacagggccaaatccaccttctcctaatttagacgactctgaaaaataattagtgctctgatgaattactgttaaagggattattggaag 395  Q
    |||||||||||||||| |||||||||||||||||||| || || || |||||||| ||||||||    || |||||||| || ||||||||| | |||||    
T  15704548 ataccttgtaaacaggaccaaatccaccttctcctaactttgatgattctgaaaagtaattagttgcatgttgaattacagtaaaagggattgtaggaag 15704647  T
Q  396 gtctccatccaatgaatcatctctttgaacatgatcatgaa 436  Q
    |||||||| ||||| ||| ||||| || | |||||||||||    
T  15704648 gtctccattcaatgtatcctctctgtggatatgatcatgaa 15704688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 15792401 - 15792491
Alignment:
Q  296 ataccttgtaaacagggccaaatccaccttctcctaatttagacgactctgaaaaataattagtgctctgatgaattactgttaaagggat 386  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | ||| |||  ||| |||||||| ||||| |||||    
T  15792401 ataccttgtagacagggccaaatccgccttctcctaatttagacgactctgaaaagttatttgtggcctgttgaattacagttaaggggat 15792491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 296 - 430
Target Start/End: Original strand, 15800583 - 15800717
Alignment:
Q  296 ataccttgtaaacagggccaaatccaccttctcctaatttagacgactctgaaaaataattagtgctctgatgaattactgttaaagggattattggaag 395  Q
    ||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| | ||  || || || | |||||  |||||||||||| | |||||    
T  15800583 ataccttgtaaactgggccaaatccaccttctcctaatttatatgactctgaaaagtcatcggtactttgttcaattatagttaaagggattgtaggaag 15800682  T
Q  396 gtctccatccaatgaatcatctctttgaacatgat 430  Q
     |||||||  |||||||| | ||||||||| ||||    
T  15800683 ttctccattgaatgaatcctgtctttgaacctgat 15800717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 15698169 - 15698290
Alignment:
Q  296 ataccttgtaaacagggccaaatccaccttctcctaatttagacgactctgaaaaataattagtgctctgatgaattactgttaaagggattattggaag 395  Q
    |||||||| ||||||| ||||| ||||||||||||||||| || ||   |||||| |||||||||   || |||||||| |  ||||||||  | |||||    
T  15698169 ataccttgaaaacaggtccaaagccaccttctcctaattttgatgatgatgaaaagtaattagtggcatgttgaattacagaaaaagggatcgtaggaag 15698268  T
Q  396 gtctccatccaatgaatcatct 417  Q
    |||||||| ||||| |||||||    
T  15698269 gtctccattcaatgtatcatct 15698290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 15698019 - 15698066
Alignment:
Q  9 ctgcaagcctttttaccgcaatttctgtcccgtctggtaaagtaccct 56  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||||    
T  15698019 ctgcaagccttttgactgcaatttctgtcccatctggtaaagtaccct 15698066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 15704406 - 15704453
Alignment:
Q  9 ctgcaagcctttttaccgcaatttctgtcccgtctggtaaagtaccct 56  Q
    |||||||||||||||||||||||||||| || |||| ||| |||||||    
T  15704406 ctgcaagcctttttaccgcaatttctgttccatctgctaaggtaccct 15704453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 15712448 - 15712493
Alignment:
Q  13 aagcctttttaccgcaatttctgtcccgtctggtaaagtaccctga 58  Q
    |||||||||  |||||||||||||||| || |||||||||||||||    
T  15712448 aagccttttggccgcaatttctgtcccatccggtaaagtaccctga 15712493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 15806011 - 15806059
Alignment:
Q  9 ctgcaagcctttttaccgcaatttctgtcccgtctggtaaagtaccctg 57  Q
    ||||||||||||| || |||| |||||| || |||||||||||||||||    
T  15806011 ctgcaagccttttcacagcaacttctgtgccatctggtaaagtaccctg 15806059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 399
Target Start/End: Complemental strand, 3079235 - 3079132
Alignment:
Q  296 ataccttgtaaacagggccaaatccaccttctcctaatttagacgactctgaaaaataattagtgctctgatgaattactgttaaagggattattggaag 395  Q
    |||||||||| ||||| ||||||||||||||||||| |||| |  | |||||||| | ||||||||| ||  ||||   | |||||||||||||||| ||    
T  3079235 ataccttgtatacaggaccaaatccaccttctcctagtttacaaaattctgaaaagttattagtgctttgtcgaatccatattaaagggattattgggag 3079136  T
Q  396 gtct 399  Q
    ||||    
T  3079135 gtct 3079132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 399
Target Start/End: Original strand, 4549722 - 4549825
Alignment:
Q  296 ataccttgtaaacagggccaaatccaccttctcctaatttagacgactctgaaaaataattagtgctctgatgaattactgttaaagggattattggaag 395  Q
    |||||||||||||||| ||||||||||||||||||| |||| |  | |||||||| | ||||||||| ||  ||||     |||||||||||||||| ||    
T  4549722 ataccttgtaaacaggaccaaatccaccttctcctagtttacataattctgaaaagttattagtgctttgtcgaatccaaattaaagggattattgggag 4549821  T
Q  396 gtct 399  Q
    ||||    
T  4549822 gtct 4549825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 399
Target Start/End: Complemental strand, 3093721 - 3093618
Alignment:
Q  296 ataccttgtaaacagggccaaatccaccttctcctaatttagacgactctgaaaaataattagtgctctgatgaattactgttaaagggattattggaag 395  Q
    |||||||||||||||| ||||| |||||| |||||| |||| |  | |||||||| | ||||||||| ||  ||||   | |||||||||||||||| ||    
T  3093721 ataccttgtaaacaggaccaaaaccacctgctcctagtttacataattctgaaaagttattagtgctttgtcgaatccatattaaagggattattgggag 3093622  T
Q  396 gtct 399  Q
    ||||    
T  3093621 gtct 3093618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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