View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4539-Insertion-2 (Length: 535)

Name: NF4539-Insertion-2
Description: NF4539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4539-Insertion-2
NF4539-Insertion-2
[»] chr1 (9 HSPs)
chr1 (8-535)||(28495695-28496222)
chr1 (418-535)||(36989350-36989467)
chr1 (419-535)||(12804511-12804627)
chr1 (419-535)||(42287127-42287243)
chr1 (419-534)||(12774948-12775063)
chr1 (419-535)||(4160387-4160503)
chr1 (132-191)||(31641897-31641956)
chr1 (417-495)||(31644056-31644134)
chr1 (419-507)||(50788819-50788907)
[»] chr8 (4 HSPs)
chr8 (419-535)||(5788723-5788839)
chr8 (131-195)||(5787996-5788060)
chr8 (479-535)||(33186745-33186801)
chr8 (134-189)||(33186981-33187036)
[»] chr7 (2 HSPs)
chr7 (419-534)||(40749401-40749516)
chr7 (437-534)||(44150818-44150915)
[»] chr2 (3 HSPs)
chr2 (416-535)||(42898308-42898427)
chr2 (419-507)||(38895857-38895945)
chr2 (417-535)||(40040799-40040917)
[»] chr4 (2 HSPs)
chr4 (417-535)||(22085504-22085622)
chr4 (419-492)||(30518148-30518221)


Alignment Details
Target: chr1 (Bit Score: 520; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 8 - 535
Target Start/End: Original strand, 28495695 - 28496222
Alignment:
Q  8 gaattccacctatattttgaagtattccatgtgataaaccatgttctgaatgtgaatgtggattcatcatagcactaccttcttcattcttaaaatttag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495695 gaattccacctatattttgaagtattccatgtgataaaccatgttgtgaatgtgaatgtggattcatcatagcactaccttcttcattcttaaaatttag 28495794  T
Q  108 atttgttgttgtaactgaagttactcttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcctttctgttcaaaatatca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495795 atttgttgttgtaactgaagttactcttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcctttctgttcaaaatatca 28495894  T
Q  208 acactcttaagttaaaacttaaaattaaaccagacacataaaaatataatccattaaagaaagcattaaattcaaaacctaacactacatacatgattgg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495895 acactcttaagttaaaacttaaaattaaaccagacacataaaaatataatccattaaagaaagcattaaattcaaaacctaacactacatacatgattgg 28495994  T
Q  308 aaaaacctcgtacatgtcacaaatatgaatatgaataaattatagaagcatttattgatttatcacagaaacaaaagattggtgaataaaaggagagtat 407  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495995 aaaaacctcgtacatgtcacaaatatgaatatgaataaattaaagaagcatttattgatttatcacagaaacaaaagattggtgaataaaaggagagtat 28496094  T
Q  408 attaaatattataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcata 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496095 attaaatattataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcata 28496194  T
Q  508 ttttttggaacatttttcacatttccac 535  Q
    ||||||||||||||||||||||||||||    
T  28496195 ttttttggaacatttttcacatttccac 28496222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 418 - 535
Target Start/End: Complemental strand, 36989467 - 36989350
Alignment:
Q  418 ataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaa 517  Q
    |||||| || |||| ||| |||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||| || |||||||| || |||    
T  36989467 atacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaa 36989368  T
Q  518 catttttcacatttccac 535  Q
    || || ||||||||||||    
T  36989367 cacttatcacatttccac 36989350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 419 - 535
Target Start/End: Original strand, 12804511 - 12804627
Alignment:
Q  419 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 518  Q
    |||||||||||||| ||||||||||||||| | || || || |||||||| || || | ||||||||||||||||||||| || |||||||| || ||||    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  519 atttttcacatttccac 535  Q
    | |||||||||||||||    
T  12804611 acttttcacatttccac 12804627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 419 - 535
Target Start/End: Complemental strand, 42287243 - 42287127
Alignment:
Q  419 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 518  Q
    ||||| ||||||||||||||||| |||||| | |||||||| |||||||| || || | ||| |||||||| |||||||| || |||||||| || || |    
T  42287243 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagc 42287144  T
Q  519 atttttcacatttccac 535  Q
    |||||||||||||||||    
T  42287143 atttttcacatttccac 42287127  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 419 - 534
Target Start/End: Complemental strand, 12775063 - 12774948
Alignment:
Q  419 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 518  Q
    ||||| |||||||| ||||||||||||||| | || ||  | |||||||| ||||| | ||||||||||||||||||||| || ||||| || || ||||    
T  12775063 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaac 12774964  T
Q  519 atttttcacatttcca 534  Q
    | |||||||| |||||    
T  12774963 acttttcacacttcca 12774948  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 419 - 535
Target Start/End: Complemental strand, 4160503 - 4160387
Alignment:
Q  419 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 518  Q
    ||||||||||||||||| ||||||||||| || || ||| | || |||||  |||| | ||||||||||||||| || || |||||||||  ||| ||||    
T  4160503 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 4160404  T
Q  519 atttttcacatttccac 535  Q
    |||| ||||| ||||||    
T  4160403 atttctcacacttccac 4160387  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 31641897 - 31641956
Alignment:
Q  132 tcttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcctt 191  Q
    ||||||||| ||||| ||||||||||||||||| |||||||| || ||||| ||||||||    
T  31641897 tcttgcactttcttcagccaatgcatcacaaaatgctctatgagttatgaagctatcctt 31641956  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 495
Target Start/End: Original strand, 31644056 - 31644134
Alignment:
Q  417 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcaga 495  Q
    ||||||| || || ||||| ||||| |||||||| |||||||  |||||||| ||||| |  |||||||||||||||||    
T  31644056 tatacctggaaaaaagggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcaga 31644134  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 507
Target Start/End: Original strand, 50788819 - 50788907
Alignment:
Q  419 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcata 507  Q
    ||||| |||||||| ||||||||||||||  | |||||||| || ||||| || || | ||| || |||||||||||||| || |||||    
T  50788819 tacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcata 50788907  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 419 - 535
Target Start/End: Original strand, 5788723 - 5788839
Alignment:
Q  419 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 518  Q
    ||||||||||||||||| |||||||||||| | |||||||| || ||||| ||||| | ||||||||||||||||||||| || |||||||| || ||||    
T  5788723 taccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaac 5788822  T
Q  519 atttttcacatttccac 535  Q
    | |||||||||||||||    
T  5788823 acttttcacatttccac 5788839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 5787996 - 5788060
Alignment:
Q  131 ctcttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcctttctg 195  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||| |||||    
T  5787996 ctcttgcactctcttctgctaatgcatcacaaaatgctctatgtgttatgaaactgtcccttctg 5788060  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 535
Target Start/End: Complemental strand, 33186801 - 33186745
Alignment:
Q  479 tgagctttccaatcagattggactgcatattttttggaacatttttcacatttccac 535  Q
    |||||||||||||||||||| || |||||||| || |||||||| ||||||||||||    
T  33186801 tgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccac 33186745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 33187036 - 33186981
Alignment:
Q  134 ttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcc 189  Q
    ||||| |||| |||||||| ||||||||||| ||||||||||| || |||||||||    
T  33187036 ttgcattctcctctgccaacgcatcacaaaaagctctatgtgtgataaaactatcc 33186981  T

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Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 419 - 534
Target Start/End: Complemental strand, 40749516 - 40749401
Alignment:
Q  419 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 518  Q
    |||||||||||||| || ||||| ||||| || |||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||    
T  40749516 taccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaac 40749417  T
Q  519 atttttcacatttcca 534  Q
    | || ||||| |||||    
T  40749416 acttatcacacttcca 40749401  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 534
Target Start/End: Original strand, 44150818 - 44150915
Alignment:
Q  437 ccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttcca 534  Q
    ||||| |||||||||||||| || |||||||| |||||    ||||| |||||||| ||||| || |||||| |||| || || || |||||||||||    
T  44150818 ccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttcca 44150915  T

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Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 416 - 535
Target Start/End: Complemental strand, 42898427 - 42898308
Alignment:
Q  416 ttataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgg 515  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||| |  ||||||||||| || ||||| |||||||| || || |    
T  42898427 ttataccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttag 42898328  T
Q  516 aacatttttcacatttccac 535  Q
    | || || ||||||||||||    
T  42898327 agcacttgtcacatttccac 42898308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 507
Target Start/End: Original strand, 38895857 - 38895945
Alignment:
Q  419 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcata 507  Q
    |||||||| ||||  |||||||| ||||||||||||||||| |||||||| || ||||  || ||||||||||| ||||| || |||||    
T  38895857 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcata 38895945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 535
Target Start/End: Complemental strand, 40040917 - 40040799
Alignment:
Q  417 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 516  Q
    ||||||| ||||| || |||||||| |||||| |||| ||| | || |||||  | ||  ||||||| |||||||||||||| ||||||||||| || ||    
T  40040917 tatacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttaga 40040818  T
Q  517 acatttttcacatttccac 535  Q
    ||| || ||||| ||||||    
T  40040817 acacttatcacacttccac 40040799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 417 - 535
Target Start/End: Original strand, 22085504 - 22085622
Alignment:
Q  417 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 516  Q
    ||||||| ||||| |  |||||||| ||||||||||| ||||| || |||||  | ||  |||||||||||||||||||||| ||||||||||| |||||    
T  22085504 tatacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttgga 22085603  T
Q  517 acatttttcacatttccac 535  Q
    ||| |||||||| ||||||    
T  22085604 acacttttcacacttccac 22085622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 419 - 492
Target Start/End: Original strand, 30518148 - 30518221
Alignment:
Q  419 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatc 492  Q
    |||||||| ||||  || ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  30518148 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatc 30518221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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