View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4539-Insertion-4 (Length: 307)
Name: NF4539-Insertion-4
Description: NF4539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4539-Insertion-4 |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 307
Target Start/End: Complemental strand, 49341335 - 49341037
Alignment:
| Q |
7 |
accaagtgccacccatagcacactaacatcaaaattagtaaatggaaagtacttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggt |
106 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49341335 |
accaaatgccacccatagcacactaacatcaaaattaataaatggaaagtacttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggt |
49341236 |
T |
|
| Q |
107 |
aactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaaatcccaaatttcactgtccctgataaacctccactcttctatat |
206 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
49341235 |
aactgatcataactt--tttgatagcagacaaaatgtcgtcatctttttgtggtaaatcccaaatttcactgtccctgttaaacttccactcttctatat |
49341138 |
T |
|
| Q |
207 |
catcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatttctttcccaatctccatcaattctggata |
306 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49341137 |
catcttttaagaatagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatttctttcccaatctccatcaattttggata |
49341038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 306
Target Start/End: Complemental strand, 49352713 - 49352414
Alignment:
| Q |
7 |
accaagtgccacccatagcacactaacatcaaaattagtaaatggaaagtacttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggt |
106 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49352713 |
accaagtgccacccatagcacactaacatgaaaattagaaaaatcaaagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggt |
49352614 |
T |
|
| Q |
107 |
aactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaaatcccaaatttcactgtccctgataaacctccactcttctatat |
206 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||||| || |||||||||||||||| |||||| |||||||| ||||||||| |||||||||| | || |
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| T |
49352613 |
aactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttgtggtaaattccaaatctcactgtctctgataaacttccactcttcaacat |
49352514 |
T |
|
| Q |
207 |
catcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatttctttcccaatctccatcaattctggata |
306 |
Q |
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|| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
49352513 |
caaattttaagaatagagaactccctaatgttcttagggccaaaggaagccctccacatttttgtacaatttctttcccaatctccaccaattctggata |
49352414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 4 - 307
Target Start/End: Original strand, 32783553 - 32783856
Alignment:
| Q |
4 |
aacaccaagtgccacccatagcacactaacatcaaaattagtaaatggaaagtacttttcaaagagagagaagcaagcaaaacattgttttaaataagaa |
103 |
Q |
| |
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||||||||| || |||| |||| |||||||| | ||||||||||| ||||| ||||| |||||| |||||||||| ||||||| |||||||||||||| |
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| T |
32783553 |
aacaccaagcacctcccaaagcatcctaacatccatattagtaaatgtaaagtccttttgaaagagggagaagcaagtaaaacatcgttttaaataagaa |
32783652 |
T |
|
| Q |
104 |
ggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaaatcccaaatttcactgtccctgataaacctccactcttcta |
203 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||||||||| ||||||||| |||||||||| | |
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| T |
32783653 |
ggtaactgatcgtaacttaatttgatagcaggcaaaatgtcatcttctttttgaggtaaattccaaatttcactgtctctgataaacttccactcttcca |
32783752 |
T |
|
| Q |
204 |
tatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatttctttcccaatctccatcaattctgg |
303 |
Q |
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|||| |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32783753 |
catcaacttttaggaatagagaactccccgatgttcttagggccaaaggaagccctccacatttttgtacaatttctttcccaatcttcatcaattctgg |
32783852 |
T |
|
| Q |
304 |
atag |
307 |
Q |
| |
|
|||| |
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|
| T |
32783853 |
atag |
32783856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 59 - 306
Target Start/End: Original strand, 29602241 - 29602488
Alignment:
| Q |
59 |
ttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtg |
158 |
Q |
| |
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||||| ||||| |||||||| ||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||| || || |||||||||| |
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| T |
29602241 |
ttttcgaagagggagaagcaggcaaaacatcgttttaaataagatggtaattgatcaaaacttaatttgatagcaggcaaaatatcatcttctttttgtg |
29602340 |
T |
|
| Q |
159 |
gtaaatcccaaatttcactgtccctgataaacctccactcttctatatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccc |
258 |
Q |
| |
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|||||| |||||| ||| ||||||| | |||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
29602341 |
gtaaattccaaatctcattgtccctaacaaacttccactcttctatatcatcttttaagaacaataaactccccaatgttcttagggccaaaggaagccc |
29602440 |
T |
|
| Q |
259 |
tccacatttttgtacaatttctttcccaatctccatcaattctggata |
306 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||| |||||| |
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| T |
29602441 |
tccacatttttgaacaatttctttcccaatctctatcaattttggata |
29602488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 63 - 306
Target Start/End: Complemental strand, 29751049 - 29750806
Alignment:
| Q |
63 |
caaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaa |
162 |
Q |
| |
|
||||||| |||||||| ||||||||| |||||||||| || ||||| |||||| |||||||||||| |||||||||||| || || |||||||||||||| |
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| T |
29751049 |
caaagagggagaagcaggcaaaacatcgttttaaatatgagggtaattgatcaaaacttaatttgagagcaggcaaaatatcatcttctttttgtggtaa |
29750950 |
T |
|
| Q |
163 |
atcccaaatttcactgtccctgataaacctccactcttctatatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctcca |
262 |
Q |
| |
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|| |||||| ||| ||||||| | |||| |||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
29750949 |
attccaaatctcattgtccctaacaaacttccactcttcaatatcatcttttaagaacaatgaactccccaatgttcttagggccaaaggaagccctcca |
29750850 |
T |
|
| Q |
263 |
catttttgtacaatttctttcccaatctccatcaattctggata |
306 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||| |||||| |
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|
| T |
29750849 |
catttttgaacaatttctttcccaatctctatcaattttggata |
29750806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 63 - 306
Target Start/End: Complemental strand, 29744016 - 29743769
Alignment:
| Q |
63 |
caaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaa |
162 |
Q |
| |
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||||||| |||||||| ||||||||| |||| |||||||| ||||| |||||| ||||||||||||||||||||||||| || || | |||||||||||| |
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|
| T |
29744016 |
caaagagggagaagcaggcaaaacatcgtttcaaataagacggtaattgatcaaaacttaatttgatagcaggcaaaatatcatcttttttttgtggtaa |
29743917 |
T |
|
| Q |
163 |
atcccaaatttcactgtccctgataaacctccactcttctatatcatctt----ttaagagtagagaactccccaatgttcttagggccaaaggaagccc |
258 |
Q |
| |
|
|| |||||| ||| ||||||| | |||| |||||||||| |||||||||| |||||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
29743916 |
attccaaatctcattgtccctaacaaacttccactcttcaatatcatcttttaattaagaacaatgaactccccaatgttcttagggccaaaggaagccc |
29743817 |
T |
|
| Q |
259 |
tccacatttttgtacaatttctttcccaatctccatcaattctggata |
306 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||| |||||| |
|
|
| T |
29743816 |
tccacatttttgcacaatttctttcccaatctctatcaattttggata |
29743769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 59 - 294
Target Start/End: Complemental strand, 35158171 - 35157936
Alignment:
| Q |
59 |
ttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtg |
158 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || || |||||||| || |||||||| | |
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|
| T |
35158171 |
ttttcaaagagggagaagcaagcaaaacactgttttaaataagaaggtaattgatcataacttaatttgattgctggtaaaatgtcctcgtctttttgcg |
35158072 |
T |
|
| Q |
159 |
gtaaatcccaaatttcactgtccctgataaacctccactcttctatatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccc |
258 |
Q |
| |
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|||||| |||||| ||| ||||||| | |||| ||||||||| ||||||| ||||||||| || |||||||||||||| ||||||||||| |||||||| |
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|
| T |
35158071 |
gtaaattccaaatctcattgtccctaacaaacttccactcttgtatatcaacttttaagaacagcgaactccccaatgtccttagggccaatggaagccc |
35157972 |
T |
|
| Q |
259 |
tccacatttttgtacaatttctttcccaatctccat |
294 |
Q |
| |
|
||||||||| | ||||| ||||| ||||||||||| |
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|
| T |
35157971 |
tccacatttaagcacaatatcttttccaatctccat |
35157936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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