View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4539-Insertion-5 (Length: 290)

Name: NF4539-Insertion-5
Description: NF4539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4539-Insertion-5
NF4539-Insertion-5
[»] chr8 (5 HSPs)
chr8 (30-182)||(26175147-26175299)
chr8 (166-221)||(26175016-26175071)
chr8 (52-182)||(7275421-7275553)
chr8 (140-181)||(4677507-4677548)
chr8 (171-205)||(7275636-7275670)
[»] chr3 (3 HSPs)
chr3 (30-182)||(4607167-4607319)
chr3 (168-209)||(10745215-10745256)
chr3 (166-205)||(42657287-42657326)
[»] scaffold1412 (2 HSPs)
scaffold1412 (30-182)||(3-155)
scaffold1412 (166-205)||(268-307)
[»] scaffold0001 (2 HSPs)
scaffold0001 (30-182)||(144901-145053)
scaffold0001 (166-205)||(145127-145166)
[»] chr6 (2 HSPs)
chr6 (30-182)||(6823275-6823427)
chr6 (166-205)||(6823540-6823579)
[»] chr1 (5 HSPs)
chr1 (37-181)||(35267749-35267893)
chr1 (92-182)||(18703387-18703478)
chr1 (55-182)||(9906100-9906226)
chr1 (168-209)||(35267989-35268030)
chr1 (171-205)||(18703515-18703549)
[»] chr7 (5 HSPs)
chr7 (30-138)||(34512596-34512704)
chr7 (51-182)||(41832335-41832468)
chr7 (51-182)||(7737011-7737142)
chr7 (48-181)||(219317-219448)
chr7 (166-205)||(34512434-34512473)
[»] chr4 (4 HSPs)
chr4 (51-182)||(5444422-5444553)
chr4 (170-221)||(5444335-5444386)
chr4 (51-144)||(11814885-11814977)
chr4 (168-206)||(55850266-55850304)
[»] chr2 (3 HSPs)
chr2 (51-182)||(24039188-24039320)
chr2 (51-182)||(31269738-31269870)
chr2 (115-181)||(36316583-36316650)
[»] chr5 (5 HSPs)
chr5 (51-182)||(21256349-21256482)
chr5 (51-182)||(41949642-41949773)
chr5 (34-181)||(17823254-17823401)
chr5 (115-182)||(35304957-35305024)
chr5 (168-206)||(35305105-35305143)
[»] scaffold0525 (1 HSPs)
scaffold0525 (51-138)||(2305-2392)
[»] scaffold0263 (1 HSPs)
scaffold0263 (89-182)||(22628-22721)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 26175299 - 26175147
Alignment:
Q  30 aaaacatagtcaccaaacaagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccacc 129  Q
    |||| ||||||| ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26175299 aaaaaatagtcatcaaacaagtgcttatccaacaagaagcaaccaaaactcaagattgaaccaattgaaggaagaagcatcaaagcaacgcttaaccacc 26175200  T
Q  130 atccggtaggagcaatcatcaacgaagtcaattaaggcacaacgcttaaccat 182  Q
    ||||||||| ||||||||||||| ||| |||||||||||| ||||||||||||    
T  26175199 atccggtagaagcaatcatcaacaaagccaattaaggcaccacgcttaaccat 26175147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 26175071 - 26175016
Alignment:
Q  166 gcacaacgcttaaccattcatgacggaagcttatcaacatggctgatccctcatga 221  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  26175071 gcacaacgcttaaccattcatgacgaaagcttatcaacatggctgatccatcatga 26175016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 7275421 - 7275553
Alignment:
Q  52 gcttatccaacaagaaacaaccacaactcaaggttgaaccaa-ttgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggag-caatcatc 149  Q
    |||||||||||||||   ||||||||||||||||  || ||  ||| ||||||||||| |||| |||||||||||||||||||||||| || ||||||||    
T  7275421 gcttatccaacaagaggaaaccacaactcaaggtgtaatcaccttggaggaagaagcagcaaaccaacgcttaaccaccatccggtagaagccaatcatc 7275520  T
Q  150 aacgaagtcaattaaggcacaacgcttaaccat 182  Q
    ||| ||| |    ||||||||| ||||||||||    
T  7275521 aacaaagccttaaaaggcacaatgcttaaccat 7275553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 4677548 - 4677507
Alignment:
Q  140 agcaatcatcaacgaagtcaattaaggcacaacgcttaacca 181  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  4677548 agcaatcatcaacaaagccaattaaggcacaacgcttaacca 4677507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 7275636 - 7275670
Alignment:
Q  171 acgcttaaccattcatgacggaagcttatcaacat 205  Q
    ||||||||||||||||||| |||||||||||||||    
T  7275636 acgcttaaccattcatgacagaagcttatcaacat 7275670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 4607319 - 4607167
Alignment:
Q  30 aaaacatagtcaccaaacaagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccacc 129  Q
    |||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||| |||||||||||||||||||||| ||||    
T  4607319 aaaacaaagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaaccaatttcaggatgaagcatcaaagcaacgcttaaacacc 4607220  T
Q  130 atccggtaggagcaatcatcaacgaagtcaattaaggcacaacgcttaaccat 182  Q
    ||||||||| ||| | |||| || ||| |||||| ||||||||||||||||||    
T  4607219 atccggtagaagccaacatcgacaaagccaattagggcacaacgcttaaccat 4607167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 10745256 - 10745215
Alignment:
Q  168 acaacgcttaaccattcatgacggaagcttatcaacatggct 209  Q
    ||||| |||||||||||||||| |||||||||||||||||||    
T  10745256 acaacacttaaccattcatgacagaagcttatcaacatggct 10745215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 42657287 - 42657326
Alignment:
Q  166 gcacaacgcttaaccattcatgacggaagcttatcaacat 205  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  42657287 gcacaacgcttaaccattcatgacagaagcctatcaacat 42657326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 3 - 155
Alignment:
Q  30 aaaacatagtcaccaaacaagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccacc 129  Q
    |||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3 aaaatatagtcatcaaacaagagcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaaggagcatcaaagcaacgcttaaccacc 102  T
Q  130 atccggtaggagcaatcatcaacgaagtcaattaaggcacaacgcttaaccat 182  Q
    ||||||||| ||| |  ||| || ||| ||   ||||||||||||||||||||    
T  103 atccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccat 155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 268 - 307
Alignment:
Q  166 gcacaacgcttaaccattcatgacggaagcttatcaacat 205  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  268 gcacaatgcttaaccattcatgacagaagcttatcaacat 307  T

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Target: scaffold0001 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 144901 - 145053
Alignment:
Q  30 aaaacatagtcaccaaacaagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccacc 129  Q
    |||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  144901 aaaatatagtcatcaaacaagagcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaaggagcatcaaagcaacgcttaaccacc 145000  T
Q  130 atccggtaggagcaatcatcaacgaagtcaattaaggcacaacgcttaaccat 182  Q
    ||||||||| ||| |  ||| || ||| ||   ||||||||||||||||||||    
T  145001 atccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccat 145053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 145127 - 145166
Alignment:
Q  166 gcacaacgcttaaccattcatgacggaagcttatcaacat 205  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  145127 gcacaatgcttaaccattcatgacagaagcttatcaacat 145166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 6823275 - 6823427
Alignment:
Q  30 aaaacatagtcaccaaacaagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccacc 129  Q
    |||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6823275 aaaatatagtcatcaaacaagagcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaaggagcatcaaagcaacgcttaaccacc 6823374  T
Q  130 atccggtaggagcaatcatcaacgaagtcaattaaggcacaacgcttaaccat 182  Q
    ||||||||| ||| |  ||| || ||| ||   ||||||||||||||||||||    
T  6823375 atccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccat 6823427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 6823540 - 6823579
Alignment:
Q  166 gcacaacgcttaaccattcatgacggaagcttatcaacat 205  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  6823540 gcacaacgcttaaccattcatgccagaagcttatcaacat 6823579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 35267749 - 35267893
Alignment:
Q  37 agtcaccaaacaagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggt 136  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||| ||||  |||||||| |||||||||||||||||||||||||||||||||     
T  35267749 agtcatcaaacaagtgcttatccaacaagaagaaaccacaactcaaggtttaaccgcttgaaggatgaagcatcaaagcaacgcttaaccaccatccggc 35267848  T
Q  137 aggagcaatcatcaacgaagtcaattaaggcacaacgcttaacca 181  Q
    || ||||||||||||| | | ||||||||||||||| ||||||||    
T  35267849 agaagcaatcatcaacaatgccaattaaggcacaacacttaacca 35267893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 182
Target Start/End: Original strand, 18703387 - 18703478
Alignment:
Q  92 aattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggag-caatcatcaacgaagtcaattaaggcacaacgcttaaccat 182  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||| || |||||||||||  || |    ||||||||||||||||||||    
T  18703387 aattggaggaagaagcaacaaaccaacgcttaaccaccatccggtagaagccaatcatcaacagagccttaaaaggcacaacgcttaaccat 18703478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 182
Target Start/End: Original strand, 9906100 - 9906226
Alignment:
Q  55 tatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggag-caatcatcaacg 153  Q
    ||||||||||||   ||||||||||||||||  || || ||| ||  ||||||| |||| |||||||||||||||||||||||| || |||||| ||||     
T  9906100 tatccaacaagaggaaaccacaactcaaggtgtaatcacttggag--agaagcaacaaaccaacgcttaaccaccatccggtagaagccaatcaacaaca 9906197  T
Q  154 aagtcaattaaggcacaacgcttaaccat 182  Q
    ||| |    ||||||||||||||||||||    
T  9906198 aagccttaaaaggcacaacgcttaaccat 9906226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 35267989 - 35268030
Alignment:
Q  168 acaacgcttaaccattcatgacggaagcttatcaacatggct 209  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  35267989 acaacgcttaaccattcatgacagaagcttatcaacatggct 35268030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 18703515 - 18703549
Alignment:
Q  171 acgcttaaccattcatgacggaagcttatcaacat 205  Q
    ||||||||||||||||||| |||||||||||||||    
T  18703515 acgcttaaccattcatgacagaagcttatcaacat 18703549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 34512704 - 34512596
Alignment:
Q  30 aaaacatagtcaccaaacaagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccacc 129  Q
    |||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  34512704 aaaacatagtcatcaagcaagtgcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaatgaaggagcatcaaagcaacgcttaaccacc 34512605  T
Q  130 atccggtag 138  Q
    |||||||||    
T  34512604 atccggtag 34512596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 41832468 - 41832335
Alignment:
Q  51 tgcttatccaacaagaaacaaccacaactcaaggttg-aaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggag-caatcat 148  Q
    ||||||||||||||||   ||||||||||||||| || ||||| ||| ||||||||||| |||| |||||||||||||||||| ||||| || |||||||    
T  41832468 tgcttatccaacaagaggaaaccacaactcaagggtgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccatctggtagaagccaatcat 41832369  T
Q  149 caacgaagtcaattaaggcacaacgcttaaccat 182  Q
    |||| ||| |    ||||||||||||||||||||    
T  41832368 caacaaagccttaaaaggcacaacgcttaaccat 41832335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 7737142 - 7737011
Alignment:
Q  51 tgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggagcaatcatca 150  Q
    ||||||| ||||||||   ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||||||  ||||||| ||| ||| | ||||     
T  7737142 tgcttattcaacaagaggaaaccacaactcaaggtttaaccacttggaggaagaagcaacaaaacaacgcttaactgccatccgatagaagccaacatcc 7737043  T
Q  151 acgaagtcaattaaggcacaacgcttaaccat 182  Q
    || ||| || | |||||||||| |||||||||    
T  7737042 acaaagccattgaaggcacaacacttaaccat 7737011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 219317 - 219448
Alignment:
Q  48 aagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggagcaatca 147  Q
    ||||||||||||||||||||  ||| ||||||||||||| ||||  |||||| || || || |||| ||||| |||||||||||| || || ||   |||    
T  219317 aagtgcttatccaacaagaagaaac-acaactcaaggtttaaccgcttgaagaaaaaa-caacaaatcaacgtttaaccaccatctggcagaagttgtca 219414  T
Q  148 tcaacgaagtcaattaaggcacaacgcttaacca 181  Q
    ||||| ||| |||||| || ||||||||||||||    
T  219415 tcaacaaagacaattaggggacaacgcttaacca 219448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 34512473 - 34512434
Alignment:
Q  166 gcacaacgcttaaccattcatgacggaagcttatcaacat 205  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  34512473 gcacaacgcttaaccattcatgacagaagcttattaacat 34512434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 5444553 - 5444422
Alignment:
Q  51 tgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggagcaatcatca 150  Q
    ||||||||||||||||   |||||||||||||||| ||| || ||| ||||||||||| ||||||||||||||||||||||||||||| ||| | |||||    
T  5444553 tgcttatccaacaagaggaaaccacaactcaaggtggaatcatttggaggaagaagcaacaaagcaacgcttaaccaccatccggtagaagccaacatca 5444454  T
Q  151 acgaagtcaattaaggcacaacgcttaaccat 182  Q
    || ||| ||   ||||||||||||||||||||    
T  5444453 acaaagccataaaaggcacaacgcttaaccat 5444422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 5444386 - 5444335
Alignment:
Q  170 aacgcttaaccattcatgacggaagcttatcaacatggctgatccctcatga 221  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  5444386 aacgcttaaccattcatgacggaagcgtatcaacatggctgatccatcatga 5444335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 11814977 - 11814885
Alignment:
Q  51 tgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggagcaa 144  Q
    |||||||||||| |||   ||||||||||||||||| ||||  |||| | |||||||| |||| |||||||||||||||||  ||||| |||||    
T  11814977 tgcttatccaaccagaggaaaccacaactcaaggtttaaccgcttgatg-aagaagcaacaaaacaacgcttaaccaccatatggtagaagcaa 11814885  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 55850266 - 55850304
Alignment:
Q  168 acaacgcttaaccattcatgacggaagcttatcaacatg 206  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  55850266 acaacgcttaaccattcatgatggaagcatatcaacatg 55850304  T

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Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 24039320 - 24039188
Alignment:
Q  51 tgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggag-caatcatc 149  Q
    ||||||||||||||||   ||||||||||||||||  ||||| ||| ||||||||||| |||| |||||||||||||||||| ||||| || ||||||||    
T  24039320 tgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccatctggtagaagccaatcatc 24039221  T
Q  150 aacgaagtcaattaaggcacaacgcttaaccat 182  Q
    ||| ||| |    ||||||||||||||||||||    
T  24039220 aacaaagccttaaaaggcacaacgcttaaccat 24039188  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 31269738 - 31269870
Alignment:
Q  51 tgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggag-caatcatc 149  Q
    ||||||||||||||||   ||||||||||||||||  ||||| ||| ||||||||||| || | |||||||||||||||||| ||||| || ||||||||    
T  31269738 tgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggaagaagcaacagaccaacgcttaaccaccatctggtagaagccaatcatc 31269837  T
Q  150 aacgaagtcaattaaggcacaacgcttaaccat 182  Q
    ||| ||| |    ||||||||||||||||||||    
T  31269838 aacaaagccttaaaaggcacaacgcttaaccat 31269870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 36316583 - 36316650
Alignment:
Q  115 caacgcttaaccaccatccggtaggagcaatcatc-aacgaagtcaattaaggcacaacgcttaacca 181  Q
    |||||||||||||||||| ||||| ||||| || | ||| ||| ||||||||||||||||||||||||    
T  36316583 caacgcttaaccaccatctggtagaagcaaacaaccaacaaagccaattaaggcacaacgcttaacca 36316650  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 51 - 182
Target Start/End: Complemental strand, 21256482 - 21256349
Alignment:
Q  51 tgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggag-caatcatc 149  Q
    ||||||||||||||||   ||||||||||||||||  ||||| ||| ||||||||||| |||| |||||||||||||||||| ||||| || ||||||||    
T  21256482 tgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccatctggtagaagccaatcatc 21256383  T
Q  150 aacgaagtc-aattaaggcacaacgcttaaccat 182  Q
    ||| ||| |  |  ||||||||||||||||||||    
T  21256382 aacaaagccttaaaaaggcacaacgcttaaccat 21256349  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 41949642 - 41949773
Alignment:
Q  51 tgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggagcaatcatca 150  Q
    ||||||||||||||||   ||||||||||||| ||  ||||| ||| ||||||||||| |||| |||| ||||||||||||||||||| ||| | ||||     
T  41949642 tgcttatccaacaagaggaaaccacaactcaatgtgtaaccacttggaggaagaagcaacaaaccaacacttaaccaccatccggtagaagccaacatcg 41949741  T
Q  151 acgaagtcaattaaggcacaacgcttaaccat 182  Q
    || ||| ||   ||||||||||||||||||||    
T  41949742 acaaagccataaaaggcacaacgcttaaccat 41949773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 17823401 - 17823254
Alignment:
Q  34 catagtcaccaaacaagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatcc 133  Q
    |||||||| ||| ||| ||||||| |||||||||  ||||| || |||||||| ||||| ||| ||||||||||| |||| |||| ||||| |||||| |    
T  17823401 catagtcaacaagcaaatgcttattcaacaagaagaaaccataattcaaggtttaaccacttggaggaagaagcaacaaatcaacccttaatcaccattc 17823302  T
Q  134 ggtaggagcaatcatcaacgaagtcaattaaggcacaacgcttaacca 181  Q
       || |   ||||||||| ||| | ||||||||||||||||||||||    
T  17823301 aacagaaattatcatcaacaaagccgattaaggcacaacgcttaacca 17823254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 35304957 - 35305024
Alignment:
Q  115 caacgcttaaccaccatccggtaggagcaatcatcaacgaagtcaattaaggcacaacgcttaaccat 182  Q
    |||||||||||||||||||||||| ||||| || | || ||| ||   ||||||||||||||||||||    
T  35304957 caacgcttaaccaccatccggtagaagcaaacaaccacaaagccataaaaggcacaacgcttaaccat 35305024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 35305105 - 35305143
Alignment:
Q  168 acaacgcttaaccattcatgacggaagcttatcaacatg 206  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  35305105 acaacgcttaactattcatgacggaagcatatcaacatg 35305143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 138
Target Start/End: Original strand, 2305 - 2392
Alignment:
Q  51 tgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtag 138  Q
    ||||||||||||||||   ||||||||||||||||  || || ||| ||||||||||| |||| ||||||||||||||||||||||||    
T  2305 tgcttatccaacaagaggaaaccacaactcaaggtgtaatcacttggaggaagaagcaacaaaccaacgcttaaccaccatccggtag 2392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 182
Target Start/End: Complemental strand, 22721 - 22628
Alignment:
Q  89 accaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggagcaatcatcaacgaagtcaattaaggcacaacgcttaaccat 182  Q
    |||| ||| ||||||||||| |||| |||||||||||||||||||||| | ||| | |||| || ||| ||   ||| ||||||||||||||||    
T  22721 accacttggaggaagaagcaacaaaccaacgcttaaccaccatccggtggaagccaacatcgacaaagccataaaagacacaacgcttaaccat 22628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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