View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4539-Insertion-9 (Length: 129)
Name: NF4539-Insertion-9
Description: NF4539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4539-Insertion-9 |
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| [»] scaffold0524 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 72; Significance: 4e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 7134998 - 7135089
Alignment:
| Q |
8 |
cacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttccttccttttg |
99 |
Q |
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| T |
7134998 |
cacatgggtcaaaaattggcttcaatgttacccactcttctcgatccaaaggcatctgaaccagccatagcaaaactatttacttccttttg |
7135089 |
T |
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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 42499140 - 42499086
Alignment:
| Q |
8 |
cacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcat |
62 |
Q |
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| T |
42499140 |
cacatagctcaaaaattagcttcaatgttacccactcttcacaatgcaaaggcat |
42499086 |
T |
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Target: chr2 (Bit Score: 71; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 17831138 - 17831208
Alignment:
| Q |
29 |
tcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttccttccttttg |
99 |
Q |
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| T |
17831138 |
tcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttccttccttttg |
17831208 |
T |
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Target: scaffold0524 (Bit Score: 59; Significance: 2e-25; HSPs: 1)
Name: scaffold0524
Description:
Target: scaffold0524; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 5321 - 5407
Alignment:
| Q |
8 |
cacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttccttcc |
94 |
Q |
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| T |
5321 |
cacatggctcaaaaattggcttcaatgtgactcactcttctcaatctaaaggcatctgaaccaaccatagaaaaactatttccttcc |
5407 |
T |
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Target: chr3 (Bit Score: 57; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 23216934 - 23216850
Alignment:
| Q |
8 |
cacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttcctt |
92 |
Q |
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|||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||| || || ||||||||||||||| |
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| T |
23216934 |
cacatggctcaaaatttggcttcaatcttacccactcttctcaatccaaaggcatctgaaccatccctaacaaaactatttcctt |
23216850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 30765920 - 30765876
Alignment:
| Q |
8 |
cacatggctcaaaaattgacttcaatgttacccactcttctcaat |
52 |
Q |
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| T |
30765920 |
cacatggctcaaaaattgacttcaatgttacccactcttttcaat |
30765876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 8e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 5790440 - 5790356
Alignment:
| Q |
8 |
cacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttcctt |
92 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||| || || ||||||||| ||||| |
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| T |
5790440 |
cacatggctcaaaaattggcttaaatgttacccactcttctcaatccaaatgcatttgaaccatccctaacaaaactatctcctt |
5790356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 33865766 - 33865850
Alignment:
| Q |
8 |
cacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttcctt |
92 |
Q |
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| T |
33865766 |
cacatggctcaaaatttggcttcaatcttacccactcttctcaattcaaaggcatctgaaccatccctaacaaaactatttcctt |
33865850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 11075049 - 11075133
Alignment:
| Q |
8 |
cacatggctcaaaaattgacttcaatgttacccactcttctcaatccaaaggcatgtgaaccagccatagcaaaactatttcctt |
92 |
Q |
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|||||||||||||| ||| | ||||| ||||||| |||||||||||||||||||| ||||||| || || ||||||||||||||| |
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| T |
11075049 |
cacatggctcaaaatttggcatcaatcttacccattcttctcaatccaaaggcatctgaaccatccctaacaaaactatttcctt |
11075133 |
T |
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