View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4539_high_4 (Length: 385)
Name: NF4539_high_4
Description: NF4539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4539_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 6 - 365
Target Start/End: Original strand, 6363250 - 6363609
Alignment:
| Q |
6 |
agtagcataggccttagtctcggttgcatttattttcctcaaatatggaaagagtgggtcgtggtgatccagtatgaacaatttattattctggatagcc |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6363250 |
agtagcataggccttagtctcggttgcatttattttcctcaaatatggaaagagtgggtcgtggtgatccagtatgaacaatttattattctggatagcc |
6363349 |
T |
|
| Q |
106 |
tgttccacaaaataaaatttagcactgttgaattannnnnnnagagtaaagttgttgaattgggtaaagatttacctgttctaccgtgaccccaaccatg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6363350 |
tgttccacaaaataaaatttagcactgttgaattatttttttagagtaaagttgttgaattgggtagagatttacctgttctaccgtgaccccaaccatg |
6363449 |
T |
|
| Q |
206 |
tttggctgcaaatgttctttggttatggtgctggtattattaccaaagagttgggtatctaacttgctctttggtggaaactcctaaaataaatgtacga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6363450 |
tttggctgcaaatgttctttggttatggtgctggtattattaccaaagagttgggtatctaacttgctctttggtggaaactcctaaaataaatgtacga |
6363549 |
T |
|
| Q |
306 |
agctgtggttaattaaaacttataaacatggcatgaaaagtgggcaaaatagcatttgtt |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
6363550 |
agctgtggttaattaaaacttataaacatggcatgaaaagtgggaaaaatagcatttgtt |
6363609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 6352312 - 6352433
Alignment:
| Q |
7 |
gtagcataggccttagtctcggttgcatttattttcctcaaatatggaaagagtgggtcgtggtgatccagtatgaacaatttattattctggatagcct |
106 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||| | |||||||||| |
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|
| T |
6352312 |
gtagcataggcctttgtctcggttgcatttattttcctcaaatatggaaagagtgggtcgtggtgatcaagtatgtacaatctattgtcttggatagcct |
6352411 |
T |
|
| Q |
107 |
gttccacaaaataaaatttagc |
128 |
Q |
| |
|
|| ||||||||||||||||| |
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|
| T |
6352412 |
gtatgacaaaataaaatttagc |
6352433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 177 - 290
Target Start/End: Original strand, 6352621 - 6352734
Alignment:
| Q |
177 |
ttacctgttctaccgtgaccccaaccatgtttggctgcaaatgttctttggttatggtgctggtattattaccaaagagttgggtatctaacttgctctt |
276 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||| ||| | |||||||||||||||||||||||||| |||||| |||| |||||| ||||||||| |
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| T |
6352621 |
ttacctgttctacggtgaccccacccatgtttggctccaagttttctttggttatggtgctggtattatcaccaaatttttggctatctagcttgctctt |
6352720 |
T |
|
| Q |
277 |
tggtggaaactcct |
290 |
Q |
| |
|
|||||||||||||| |
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|
| T |
6352721 |
tggtggaaactcct |
6352734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 184 - 299
Target Start/End: Original strand, 6332172 - 6332287
Alignment:
| Q |
184 |
ttctaccgtgaccccaaccatgtttggctgcaaatgttctttggttatggtgctggtattattaccaaagagttgggtatctaacttgctctttggtgga |
283 |
Q |
| |
|
|||||| ||||||||| |||||||| |||| || ||||||| |||||| ||||| ||||||| ||| ||||||||||||||| ||||||||||||||| |
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|
| T |
6332172 |
ttctacagtgaccccatccatgtttagctgtaactgttcttcggttattgtgctcgtattatcaccgtagagttgggtatctagcttgctctttggtggg |
6332271 |
T |
|
| Q |
284 |
aactcctaaaataaat |
299 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
6332272 |
aactcctacaataaat |
6332287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 7459150 - 7459268
Alignment:
| Q |
10 |
gcataggccttagtctcggttgcatttattttcctcaaatatggaaagagtgggtcgtggtgatccagtatgaacaatttattattctggatagcctgtt |
109 |
Q |
| |
|
||||||| ||| ||||| |||||||||||| ||||||||||||||| ||| | ||||||||||| |||||| |||||||||| || |||||||||||| |
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|
| T |
7459150 |
gcataggactttgtctcagttgcatttattctcctcaaatatggaattagtagatcgtggtgatcaagtatgtacaatttattgttttggatagcctgta |
7459249 |
T |
|
| Q |
110 |
ccacaaaataaaatttagc |
128 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
7459250 |
tgacaaaataaaatttagc |
7459268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 7459420 - 7459534
Alignment:
| Q |
177 |
ttacctgttctaccgtgaccccaaccatgtttggctgcaaatgttctttggttatggtgctggtattattaccaaagagttgggtatctaacttgctctt |
276 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||| ||| || || ||||||| ||||||||||||| |||| | |||| | |||||||||||||||| |
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|
| T |
7459420 |
ttacctgttctactgtgacccctcccatgtttggctccaagtgatcaatggttattgtgctggtattatcaccatatagtttgctatctaacttgctctt |
7459519 |
T |
|
| Q |
277 |
tggtggaaactccta |
291 |
Q |
| |
|
||||||||||||||| |
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|
| T |
7459520 |
tggtggaaactccta |
7459534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 290
Target Start/End: Original strand, 6370317 - 6370430
Alignment:
| Q |
177 |
ttacctgttctaccgtgaccccaaccatgtttggctgcaaatgttctttggttatggtgctggtattattaccaaagagttgggtatctaacttgctctt |
276 |
Q |
| |
|
|||||| || ||| ||||||||| ||||||||||| ||| |||||||||||||| ||||||||||||| |||| |||||| |||||||||||||||| |
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| T |
6370317 |
ttacctcttttactgtgaccccattcatgtttggctccaagtgttctttggttattgtgctggtattatcaccatagagtttactatctaacttgctctt |
6370416 |
T |
|
| Q |
277 |
tggtggaaactcct |
290 |
Q |
| |
|
| ||||| ||||| |
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|
| T |
6370417 |
tcttggaagctcct |
6370430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 184 - 291
Target Start/End: Original strand, 6289284 - 6289391
Alignment:
| Q |
184 |
ttctaccgtgaccccaaccatgtttggctgcaaatgttctttggttatggtgctggtattattaccaaagagttgggtatctaacttgctctttggtgga |
283 |
Q |
| |
|
|||||| ||||||||| |||| ||| ||||||| |||||||||||||| ||||| ||||||| ||| || |||| ||| || ||||||||||||||| |
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|
| T |
6289284 |
ttctacagtgaccccatccatatttagctgcaactgttctttggttattgtgctcgtattatcaccgtagtcttggctatttagcttgctctttggtggg |
6289383 |
T |
|
| Q |
284 |
aactccta |
291 |
Q |
| |
|
|||||||| |
|
|
| T |
6289384 |
aactccta |
6289391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 6424158 - 6424276
Alignment:
| Q |
9 |
agcataggccttagtctcggttgcatttattttcctcaaatatggaaagagtgggtcgtggtgatccagtatgaacaatttattattctggatagcctgt |
108 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||| | | | ||| | |||||| || ||| ||||||| || || |||||||||| |
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|
| T |
6424158 |
agcataggcctttgtctcagttgcatttattttcctcaaatatggatatactatgtcatagtgatcaaggatgtacaatttgttgttttggatagcctaa |
6424257 |
T |
|
| Q |
109 |
tccacaaaataaaatttag |
127 |
Q |
| |
|
|| |||||||| ||||||| |
|
|
| T |
6424258 |
tcaacaaaatataatttag |
6424276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 6274826 - 6274899
Alignment:
| Q |
218 |
tgttctttggttatggtgctggtattattaccaaagagttgggtatctaacttgctctttggtggaaactccta |
291 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| ||||||| |||||| |||||||||||||||||| ||||| |
|
|
| T |
6274826 |
tgttctttggttattgtgctggtattatcaccgtagagttgcctatctagcttgctctttggtggaaattccta |
6274899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 290
Target Start/End: Original strand, 6424341 - 6424454
Alignment:
| Q |
177 |
ttacctgttctaccgtgaccccaaccatgtttggctgcaaatgttctttggttatggtgctggtattattaccaaagagttgggtatctaacttgctctt |
276 |
Q |
| |
|
||||||||||||| |||| ||| ||| |||||||| ||| ||||||||||||||||||||||| |||| ||| | |||| |||||| ||||||||| |
|
|
| T |
6424341 |
ttacctgttctacagtgatcccgcccaagtttggctccaattgttctttggttatggtgctggtgttatctccatatttttggctatctagcttgctctt |
6424440 |
T |
|
| Q |
277 |
tggtggaaactcct |
290 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
6424441 |
atgtgggaactcct |
6424454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 6331959 - 6332033
Alignment:
| Q |
7 |
gtagcataggccttagtctcggttgcatttattttcctcaaatatggaaagagtgggtcgtggtgatccagtatg |
81 |
Q |
| |
|
|||||||| ||||| || || |||| ||||||||||||||||||||||| | |||||| |||||||| |||||| |
|
|
| T |
6331959 |
gtagcatatgcctttgtatcagttgagtttattttcctcaaatatggaaatattgggtcatggtgatcaagtatg |
6332033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 6370138 - 6370228
Alignment:
| Q |
32 |
catttattttcctcaaatatggaaagagtgggtcgtggtgatccagtatgaacaatttattattctggatagcctgttccacaaaataaaa |
122 |
Q |
| |
|
|||||| |||||||||||||||| ||| || ||||||||||| |||||| ||||| |||| | | ||||||||||| |||||| |||| |
|
|
| T |
6370138 |
catttactttcctcaaatatggatagattgcatcgtggtgatcaagtatgtacaatctattgtcttcgatagcctgttagacaaaaaaaaa |
6370228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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