View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4539_low_11 (Length: 251)
Name: NF4539_low_11
Description: NF4539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4539_low_11 |
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| [»] chr6 (3 HSPs) |
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| [»] chr1 (5 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 18079008 - 18078758
Alignment:
| Q |
1 |
catagcttgtttttctcgaccaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacgaagccattttagcgccaacaccg |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18079008 |
catagcttgtttttctcgatcaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacgaagccattttagcgccaacaccg |
18078909 |
T |
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| Q |
101 |
atagctggtgccacgtcatcaccctccaacggtaccgtctccatcgatgatcatgatcaggaatgagttcgtttaggtccgggactgtgagtgtgacttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| |
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| T |
18078908 |
atagctggtgccacgtcatcaccctccaacggtaccgtctccatcgatgatcatgatcaggaatgggttcgtctaggtccgggactgtgagtctgacttt |
18078809 |
T |
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| Q |
201 |
gatttttactgtatatgtgtctatgacgttgttctcttcctccgccattga |
251 |
Q |
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| T |
18078808 |
gatttttactgtatatgtgactatgacgctgttctcgtcctccgccattga |
18078758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 18077103 - 18077026
Alignment:
| Q |
1 |
catagcttgtttttctcgaccaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacga |
78 |
Q |
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| T |
18077103 |
catagtttgtttttctcgaccaggaacagattcaacagctgctgccgccacatcatcaccttcaccgtcgttcaacga |
18077026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 18076913 - 18076846
Alignment:
| Q |
181 |
gggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgccat |
248 |
Q |
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| T |
18076913 |
gggaccgtgagtgtgactttgattttcactatatatgtgactatgtggtggttctcttctcccgccat |
18076846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 51478443 - 51478336
Alignment:
| Q |
144 |
tcgatgatcatgatcaggaatgagttcgtttaggtccgggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctcc |
243 |
Q |
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|||||||||||||||||||||| |||| | | |||||||||| |||||| ||||||||||||| ||| |||| ||| ||||| | |||||||||||||| |
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| T |
51478443 |
tcgatgatcatgatcaggaatgggttcatctgggtccgggacggtgagtatgactttgattttcactatatacgtgactatgtcattgttctcttcctca |
51478344 |
T |
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| Q |
244 |
gccattga |
251 |
Q |
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|||||||| |
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| T |
51478343 |
gccattga |
51478336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 51454428 - 51454295
Alignment:
| Q |
5 |
gcttgtttttctcgaccaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacgaagccattttagcgccaacaccgatag |
104 |
Q |
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| T |
51454428 |
gcttgtttttctcgatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacag |
51454329 |
T |
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| Q |
105 |
ctggtgccacgtcatcaccctccaacggtaccgt |
138 |
Q |
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|| ||||||||||| || |||||||||||||||| |
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| T |
51454328 |
cttgtgccacgtcaccatcctccaacggtaccgt |
51454295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 51478609 - 51478479
Alignment:
| Q |
6 |
cttgtttttctcgaccaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacgaagccattttagcgccaacaccgatagc |
105 |
Q |
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|||||||| ||||| ||||| || |||||||| || || | ||||||| |||| |||| |||| |||||||| ||| ||| ||| |||||||||||||| |
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| T |
51478609 |
cttgttttcctcgatcaggaacagattcttcagctacttccaccacgtcatcacgttcatcgtccttcaacgacgccgtttcagctccaacaccgatagc |
51478510 |
T |
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| Q |
106 |
tggtgccacgtcatcaccctccaacggtacc |
136 |
Q |
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| ||||||| ||| || |||||||||||||| |
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| T |
51478509 |
ttgtgccacatcaccatcctccaacggtacc |
51478479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 51454259 - 51454154
Alignment:
| Q |
146 |
gatgatcatgatcaggaatgagttcgtttaggtccgggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgc |
245 |
Q |
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|||||||||||||||||||| |||| | | || |||| |||||||||||||||||||| ||| |||| ||| || || |||||||||||||||||| |
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| T |
51454259 |
gatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatataagtgactgtgtggttgttctcttcctccgc |
51454160 |
T |
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| Q |
246 |
cattga |
251 |
Q |
| |
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|||||| |
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| T |
51454159 |
cattga |
51454154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 51474414 - 51474337
Alignment:
| Q |
1 |
catagcttgtttttctcgaccaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacga |
78 |
Q |
| |
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||||| ||||||||||||| ||||| || |||||||| ||||||||||||| || ||||||||| |||| |||||||| |
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| T |
51474414 |
catagtttgtttttctcgatcaggaacatattcttcagctgctgctgccacatcatcaccttcaccgtcattcaacga |
51474337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 42431626 - 42431689
Alignment:
| Q |
188 |
tgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgccattga |
251 |
Q |
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||||||||||||||||||| || |||||||| | ||| ||||||||||||||||||||||||| |
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| T |
42431626 |
tgagtgtgactttgattttcacaatatatgtggcaatgtcgttgttctcttcctccgccattga |
42431689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 42433456 - 42433379
Alignment:
| Q |
174 |
taggtccgggactgtgagtgtgactttgatttttactgtatatgtgtctatgacgttgttctcttcctccgccattga |
251 |
Q |
| |
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|||||| ||||| |||| ||||||||||||| || ||||||| | ||| ||||||||||||||||||||||||| |
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| T |
42433456 |
taggtctgggacaatgagggtgactttgatttgcacaacatatgtgacaatgtcgttgttctcttcctccgccattga |
42433379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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