View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4539_low_2 (Length: 556)
Name: NF4539_low_2
Description: NF4539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4539_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 12 - 540
Target Start/End: Original strand, 4788080 - 4788609
Alignment:
| Q |
12 |
atgaatggacaacataacatccagaaatcgagcatatttcaactcagcggaaacaatttaagggatgcataaagtaaaatactaacactaaaa-aatgca |
110 |
Q |
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| T |
4788080 |
atgaatggacaacataacatccagaaatcgagcatatttcaactcagcggaaacaatttaagggttgcataaagtaaaatactaacactaaaaaaatgca |
4788179 |
T |
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| Q |
111 |
atgaaaggatgattcagattcaaagttgaacaattgagattcaaatcataaactgtaaatgtaagtaatttgatctacatctagctaatcgtaaattaat |
210 |
Q |
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| T |
4788180 |
atgaaaggatgattcagattcaaagttgaacaattgagattcaaatcataaactgtaaatgtaagtaatttgatctacatctagctaatcgtaaattaat |
4788279 |
T |
|
| Q |
211 |
taagttaaatgagaattagattgaaaatgaagaaaaagggacctacctgaacaccgccatcagaggaggtagaaggagcgagaacgggaccaagttgttg |
310 |
Q |
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| T |
4788280 |
taagttaaatgagaattagattgaaaatgaagaaaaagggacctacctgaacaccgccatcagaggaggtagaaggagcgagaacgggaccaagttgttg |
4788379 |
T |
|
| Q |
311 |
ttgttgaggacgatcgttcacaacctgagccttaacgctaaagcctctacgaggttgaccggtttctttgacgcgaaaattcgttggacgatgttgacca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4788380 |
ttgttgaggacgatcgttcacaacctgagccttaacgctaaagcctctacgaggttgaccggtttctttgacgcgaaaattcgttggacgatgttgacca |
4788479 |
T |
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| Q |
411 |
ccggcaccggaggcggcgtgtcgatcgtcggagttattgttatcattggaatcgtgatcgtggttgtcatcatctttagaaaaccctaggaaaccgaaaa |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4788480 |
ccggcaccggaggcggcgtgtcgatcgtcggagttattgttatcattggaatcgtgatcgtggttgtcatcatctttagaaaaccctaggaatccgaaaa |
4788579 |
T |
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| Q |
511 |
cctttctgaaaagacccatcaatataaaac |
540 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
4788580 |
cctttctgaaaagacccatcaatataaaac |
4788609 |
T |
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