View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4539_low_3 (Length: 414)
Name: NF4539_low_3
Description: NF4539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4539_low_3 |
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| [»] scaffold0224 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 13376 - 13790
Alignment:
| Q |
1 |
tttgactctcttaaggggagaaacttccaaccttgataaattttcttaaaactaatatcaagagtcattccctcaaaaatatatcaatgtctacaatcca |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
13376 |
tttgactctcttaaggtgagaaacttccaaccttgataaattttcttaatactaatatcaagagtcagtccctcaaaaatatatcaaggtctacaatcca |
13475 |
T |
|
| Q |
101 |
acaacccggactactttattatactctttatcatgaaacctactataaagaaatcaagcacaaaatcatgannnnnnnnnnn-gtcattagctcatcata |
199 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13476 |
acagaccggactactttattacactctttatcatgaaacctactataaagaaatcaagcacaaaatcatgattttttttttttgtcattagctcatcata |
13575 |
T |
|
| Q |
200 |
ttaggattttgccaattctgctcacatcagacaacaaactagtaatcgatgataacttccaccgcatatgaaactatgaaagtaaaccattgagtagaaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13576 |
ttaggattttgccaattctgctcacatcagacaacaaactagtaatcgatgataacttccaccgcatatgaaactatgaaagtaaaccactgagtagaaa |
13675 |
T |
|
| Q |
300 |
acaacaaagtctctattttggagaaaactttctaggtcccaacagtagcatcaggggtgagagcatcgttatcacttgtgaacagcaaacatgtgaggat |
399 |
Q |
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|||||||||||| ||||||||||||||| ||||| || |||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13676 |
acaacaaagtctttattttggagaaaacattctaagtaccaataatagcattaggggtgagagcatcgttatcacttgtgaacagcaaacatgtgaagat |
13775 |
T |
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| Q |
400 |
gaagatggttcatct |
414 |
Q |
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| T |
13776 |
gaaggtggttcatct |
13790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 42933395 - 42932981
Alignment:
| Q |
1 |
tttgactctcttaaggggagaaacttccaaccttgataaattttcttaaaactaatatcaagagtcattccctcaaaaatatatcaatgtctacaatcca |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
42933395 |
tttgactctcttaaggtgagaaacttccaaccttgataaattttcttaatactaatatcaagagtcagtccctcaaaaatatatcaaggtctacaatcca |
42933296 |
T |
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| Q |
101 |
acaacccggactactttattatactctttatcatgaaacctactataaagaaatcaagcacaaaatcatgannnnnnnnnnn-gtcattagctcatcata |
199 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42933295 |
acagaccggactactttattacactctttatcatgaaacctactataaagaaatcaagcacaaaatcatgattttttttttttgtcattagctcatcata |
42933196 |
T |
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| Q |
200 |
ttaggattttgccaattctgctcacatcagacaacaaactagtaatcgatgataacttccaccgcatatgaaactatgaaagtaaaccattgagtagaaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42933195 |
ttaggattttgccaattctgctcacatcagacaacaaactagtaatcgatgataacttccaccgcatatgaaactatgaaagtaaaccactgagtagaaa |
42933096 |
T |
|
| Q |
300 |
acaacaaagtctctattttggagaaaactttctaggtcccaacagtagcatcaggggtgagagcatcgttatcacttgtgaacagcaaacatgtgaggat |
399 |
Q |
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|||||||||||| ||||||||||||||| ||||| || |||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42933095 |
acaacaaagtctttattttggagaaaacattctaagtaccaataatagcattaggggtgagagcatcgttatcacttgtgaacagcaaacatgtgaagat |
42932996 |
T |
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| Q |
400 |
gaagatggttcatct |
414 |
Q |
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|||| |||||||||| |
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| T |
42932995 |
gaaggtggttcatct |
42932981 |
T |
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