View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4539_low_5 (Length: 340)
Name: NF4539_low_5
Description: NF4539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4539_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 321
Target Start/End: Complemental strand, 1537798 - 1537492
Alignment:
| Q |
15 |
catcacacgcttcttctcttcaatctcttcacaaacccaaaacgacgccgaattaatctccaaaatactcctaacacaccacaacccttaccacttcaca |
114 |
Q |
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| T |
1537798 |
catcacacgcttcttctcttcaatctcttcacaaacccaaaacgacgccgaattaatctccaaaatactcctaacacaccacaacccttaccacttcaca |
1537699 |
T |
|
| Q |
115 |
gaatcttcccttcaactcaatggcataaccctaaccccaattctcttaacccaaaccctaactctcctcaaacaccactccaaaatcgctctttcccttc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1537698 |
gaatcttcccttcaactcaatggcataaccctaaccccaattctcttaacccaaaccctaactctcctcaaacaccactccaaaatcgctctttcccttc |
1537599 |
T |
|
| Q |
215 |
acaatttctccaaatctctcccaaacccacctctctctcttcaatcctacaatctcctcatcgatattgtctccaaagttcatcaattcgatcttgcttc |
314 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |
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| T |
1537598 |
acaatttctccaaatctctcccaaacccacctctctctcttcaatcctacaatctcctcattgatattgtctccaaagttcatcaattcgacctcgcttc |
1537499 |
T |
|
| Q |
315 |
tcaactc |
321 |
Q |
| |
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|||||| |
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|
| T |
1537498 |
gcaactc |
1537492 |
T |
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