View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4539_low_7 (Length: 295)
Name: NF4539_low_7
Description: NF4539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4539_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 42213852 - 42214123
Alignment:
| Q |
10 |
caatggatggctctcagattcaatgacatctgagaacccttcaactcctctaagctactctcacgattctttctgcgagatctcagatgtgggcacgcca |
109 |
Q |
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| T |
42213852 |
caatggatggctctcagattcaatgatatctgagaacccttcaactcctctaagctactctcacgattctttctgcgagatctcagatgtgggtacacca |
42213951 |
T |
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| Q |
110 |
agttattggaactccttgctcaaatttgaagaggaagacaatgattggattttggataaagcaagttactcgcattctttactaagtcttgaagaggaag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213952 |
agttattggaactccttgctcaaatttgaagaggaagacagtgattggattttggataaagcaagttactcgcattctttactaagtcttgaagaggaag |
42214051 |
T |
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| Q |
210 |
actctgaatggctttcagattcaatggtatctgagaatccttctagtcctctaagctacaatggtgattctt |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214052 |
actctgaatggctttcagattcaatggtatctgagaatccttctagtcctctaagctacaatggtgattctt |
42214123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 24 - 281
Target Start/End: Original strand, 42207036 - 42207293
Alignment:
| Q |
24 |
cagattcaatgacatctgagaacccttcaactcctctaagctactctcacgattctttctgcgagatctcagatgtgggcacgccaagttattggaactc |
123 |
Q |
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| T |
42207036 |
cagattcaatgacacctgagaatccttcaactcctctaagctacattggtgattcttttagtgagatctcagacataggcacaccaagttaccgggacta |
42207135 |
T |
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| Q |
124 |
cttgctcaaatttgaagaggaagacaatgattggattttggataaagcaagttactcgcattctttactaagtcttgaagaggaagactctgaatggctt |
223 |
Q |
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| T |
42207136 |
cttgctaaaacttaaagaggaagacagtgattggattttggacaaagcaagttactcgaattctttactaagtcttgaagaggaagactctgaatggctt |
42207235 |
T |
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| Q |
224 |
tcagattcaatggtatctgagaatccttctagtcctctaagctacaatggtgattctt |
281 |
Q |
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|||| ||||||| ||||||||||||||| ||||||||||||| || ||||||||||| |
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| T |
42207236 |
tcaggttcaatgatatctgagaatccttatagtcctctaagcctcagtggtgattctt |
42207293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 42214059 - 42214324
Alignment:
| Q |
16 |
atggctctcagattcaatgacatctgagaacccttcaactcctctaagctactctcacgattctttctgcgagatctcagatgtgggcacgccaagttat |
115 |
Q |
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| T |
42214059 |
atggctttcagattcaatggtatctgagaatccttctagtcctctaagctacaatggtgattctttcagcaagatctcagacgtaggcttgccaagttac |
42214158 |
T |
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| Q |
116 |
tggaactccttgctcaaatttgaagaggaagacaatgattggattttggataaagcaagttactcgcattctttactaagtcttgaagaggaagactctg |
215 |
Q |
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||| |||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214159 |
tgggactccttgctcaaacttgaagaggaagacaatgtgtggattttggacaaagcaagttactcgcattctttactaagtcttgaagaggaagactctg |
42214258 |
T |
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| Q |
216 |
aatggctttcagattcaatggtatctgagaatccttctagtcctctaagctacaatggtgattctt |
281 |
Q |
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|||||| |||||||||||| | |||||| | ||||| ||||||||||||| |||||||| ||||| |
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| T |
42214259 |
catggctctcagattcaatgatctctgaggacccttccagtcctctaagctccaatggtggttctt |
42214324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 42207229 - 42207491
Alignment:
| Q |
16 |
atggctctcagattcaatgacatctgagaacccttcaactcctctaagctactctcacgattctttctgcgagatctcagatgtgggcacgccaagttat |
115 |
Q |
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|||||| |||| |||||||| ||||||||| |||| | |||||||||| | | ||||||||| || ||||||| || | ||| ||||||||| |
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| T |
42207229 |
atggctttcaggttcaatgatatctgagaatccttatagtcctctaagcctcagtggtgattctttcagcaagatctcggacataggcttgccaagttac |
42207328 |
T |
|
| Q |
116 |
tggaactccttgctcaaatttgaagaggaagacaatgattggattttggataaagcaagttactcgcattctttactaagtcttgaagaggaagactctg |
215 |
Q |
| |
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||| | |||||| ||||| |||| || |||||||| ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42207329 |
tgggagtccttgatcaaacttgacga---agacaatgtgtggattttggacagagcaagttatacgcattctttactaagtcttgaagaggaagactctg |
42207425 |
T |
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| Q |
216 |
aatggctttcagattcaatggtatctgagaatccttctagtcctctaagctacaatggtgattctt |
281 |
Q |
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|||||| |||||||||||| | |||| ||||||||||||||||||||||| || ||||||| |
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| T |
42207426 |
catggctctcagattcaatgatccatgagggcccttctagtcctctaagctacaacggcgattctt |
42207491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 42214260 - 42214405
Alignment:
| Q |
16 |
atggctctcagattcaatgacatctgagaacccttcaactcctctaagctactctcacgattctttctgcgagatctcagatgtgggcacgccaagttat |
115 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| | ||||||||||| | | | ||||||| ||| ||||||||||| ||||| || ||||| |
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| T |
42214260 |
atggctctcagattcaatgatctctgaggacccttccagtcctctaagctccaatggtggttctttcaccgatatctcagatgtaggcacacctagttac |
42214359 |
T |
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| Q |
116 |
tggaactccttgctcaaatttgaagaggaagacaatgattggattt |
161 |
Q |
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||| |||||||||||| | ||||| ||||||||||||| ||||||| |
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| T |
42214360 |
tgggactccttgctcagacttgaaaaggaagacaatgagtggattt |
42214405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 268
Target Start/End: Original strand, 42213812 - 42213909
Alignment:
| Q |
171 |
caagttactcgcattctttactaagtcttgaagaggaagactctgaatggctttcagattcaatggtatctgagaatccttctagtcctctaagctac |
268 |
Q |
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|||||||| ||| ||||| ||||||||||| ||||||||| || |||||| |||||||||||| |||||||||| ||||| | ||||||||||||| |
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| T |
42213812 |
caagttacgggcactctttgctaagtcttgacgaggaagacaatggatggctctcagattcaatgatatctgagaacccttcaactcctctaagctac |
42213909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 281
Target Start/End: Original strand, 42206993 - 42207092
Alignment:
| Q |
185 |
tctttactaagtcttgaagaggaagactctgaatggcttt---cagattcaatggtatctgagaatccttctagtcctctaagctacaatggtgattctt |
281 |
Q |
| |
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||||| ||||||||||||||||||||| ||| ||| | | ||||||||||| | ||||||||||||| | |||||||||||||| ||||||||||| |
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| T |
42206993 |
tctttgctaagtcttgaagaggaagacattgattgggtctcagcagattcaatgacacctgagaatccttcaactcctctaagctacattggtgattctt |
42207092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 42207427 - 42207561
Alignment:
| Q |
16 |
atggctctcagattcaatgacatctgagaacccttcaactcctctaagctactctcacgattctttctgcgagatctcagatgtgggcacgccaagttat |
115 |
Q |
| |
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|||||||||||||||||||| |||| |||||| | ||||||||||||| |||||||||| ||| |||||| | | ||||| || |||||| |
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| T |
42207427 |
atggctctcagattcaatgatccatgagggcccttctagtcctctaagctacaacggcgattctttcaccgatatctcaaacggaggcacacctagttat |
42207526 |
T |
|
| Q |
116 |
tggaactccttgctcaaatttgaagaggaagacaa |
150 |
Q |
| |
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||| |||||||||||| |||||||||||||||| |
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| T |
42207527 |
tgggactccttgctcaggcttgaagaggaagacaa |
42207561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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