View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4539_low_8 (Length: 267)
Name: NF4539_low_8
Description: NF4539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4539_low_8 |
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| [»] scaffold0635 (1 HSPs) |
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Alignment Details
Target: scaffold0635 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 43 - 230
Target Start/End: Original strand, 3302 - 3489
Alignment:
| Q |
43 |
aaaatattcgaacaattgaatatcacatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacaccta |
142 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3302 |
aaaatattcaaacagttgaatatcacatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacaccta |
3401 |
T |
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| Q |
143 |
aagaacacatgtatcttatgaaattttaacatttatgaaatgagaataaccaaagttgaaagaagcaactcttatttttcccttcttt |
230 |
Q |
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| T |
3402 |
aagaacacatgtatcttatgaaattttaacatttatgaaatgagaataaccaaagttgaaagaagcaattcttatttttcccttcttt |
3489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 43 - 230
Target Start/End: Complemental strand, 10043768 - 10043581
Alignment:
| Q |
43 |
aaaatattcgaacaattgaatatcacatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacaccta |
142 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10043768 |
aaaatattcaaacagttgaatatcacatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacaccta |
10043669 |
T |
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| Q |
143 |
aagaacacatgtatcttatgaaattttaacatttatgaaatgagaataaccaaagttgaaagaagcaactcttatttttcccttcttt |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10043668 |
aagaacacatgtatcttatgaaattttaacatttatgaaatgagaataaccaaagttgaaagaagcaattcttatttttcccttcttt |
10043581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 43 - 230
Target Start/End: Complemental strand, 10105482 - 10105295
Alignment:
| Q |
43 |
aaaatattcgaacaattgaatatcacatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacaccta |
142 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10105482 |
aaaatattcaaacagttgaatatcacatcatttcattatatggtttgataggaattacatgatattataagtgaatcatgcatatggtgcttcacaccta |
10105383 |
T |
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| Q |
143 |
aagaacacatgtatcttatgaaattttaacatttatgaaatgagaataaccaaagttgaaagaagcaactcttatttttcccttcttt |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10105382 |
aagaacacatgtatcttatgaaattttaacatttatgaaatgagaataaccaaagttgaaagaagcaattcttatttttcccttcttt |
10105295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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