View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4543-Insertion-2 (Length: 1003)
Name: NF4543-Insertion-2
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543-Insertion-2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 810; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 810; E-Value: 0
Query Start/End: Original strand, 7 - 985
Target Start/End: Complemental strand, 25217645 - 25216670
Alignment:
| Q |
7 |
ataattagtggtacagtaatctgctttatagaaaatcagttaatttagtttagttagttgctactcccgtagatttgtctttaaacattctgaagcttaa |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25217645 |
ataattagtggtacagtaatctgctttatagaaattcagttaatttagtttagttagttgctactcccgtagatttgtctttaaacattctgaagcttaa |
25217546 |
T |
|
| Q |
107 |
tgcatttagaaatgcttttgaatattgtcttgatgccattttccaatctcctcctgtcttcatcattgccttaaattcctcaaaacttactcgaccatcc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25217545 |
tgcatttagaaatgcttttgaatattgtcttgatgccattttccaatctcctcctgtcttcatcattgccttaaattcctcaaaacttactcgaccatcc |
25217446 |
T |
|
| Q |
207 |
tataacaaaacaaaacattataaccgatttctaactaatataaccgatttataaccgacttctaacatctatcttaccttatccaagtcgacatcgttga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
25217445 |
tataacaaaacaaaacattataaccgatttctaactaatataac-gatttataaccgacttctaacatatatcttaccttatccaagtcgacatcgttga |
25217347 |
T |
|
| Q |
307 |
gaatgtctctgatcacttggtcatcggtcgaaccattatctgataaggcatctttcaactcatcaaactcaacatatccactcttattcttgtcaaagaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25217346 |
gaatgtctctgatcacttggtcatcggtcgaaccattatctgataaggcatctttcaactcatcaaactcaacatatccactcttattcttgtcaaagaa |
25217247 |
T |
|
| Q |
407 |
attgaatgcttctgtgagatgctcatcatttccaagccttctcatgtgaacactcattgtgatgaactcttcacaattcaaggtgccatttccatcaaaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25217246 |
attgaatgcttctgtgagatgctcatcatttccaagccttctcatgtgaacactcattgtgatgaactcttcacaattcaaggtgccatttccatcaaaa |
25217147 |
T |
|
| Q |
507 |
tctgcctgttgtcatcaattaacaaccaagttcannnnnnncattattgtaacaatgctctagacagaaaaagttcatataatttgttaaagcaatatga |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
25217146 |
tctgcctgttgtcatcaattaacaaccaagttca-ttttttcattatagtaacaatgctctagatagaaaaagttcatataatttgttaaagcaatatga |
25217048 |
T |
|
| Q |
607 |
atcttgnnnnnnnttcttttggataatgacggaaatctgccaaaactttcctatgaaggattttgggttgtattcggttagtgattaactgttgcaatct |
706 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25217047 |
atcttgaaaaaaattcttttggataatgacggaaatcagccaaaactttcctatgaaggattttgggttgtattcggttagtgattaactgttgcaatct |
25216948 |
T |
|
| Q |
707 |
atgaagcactgacacgccaacactaacaataatttgaggaaataaattaattgtctgtaatcacatgtgttggtgtcatgtcggacaccagacacgcttt |
806 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| | || |
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|
| T |
25216947 |
atgaagcactgacacgccaacactaataataatttgaggaaataaattaattgtctgtagtcacatgtgttggtgtcatgtcagacgccagacacac-tt |
25216849 |
T |
|
| Q |
807 |
tcaatcaaaaatgccggtgcaagagtttgctatcatatttttaatac--aatacactacgataccgcaagaggcaatcttatttgagggccaataaagca |
904 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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|
| T |
25216848 |
tcaatcaaaaatgtcggtgcaagagtttgctatcatatttttaatacaaaatacactacgataccgcaagagacaatcttatttga-ggccaataaagca |
25216750 |
T |
|
| Q |
905 |
actaggtgatgcctctctttcaagaaagttaaattttcac-atcagatcaaagataggtggttcttttatcatc-tatatttg |
985 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||||| |
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|
| T |
25216749 |
actaggtgatgcctctc-ttcaagaaagttaaattttcacaatcaaatcaaagatag--tgttcttttatcatcgtatatttg |
25216670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 4e-84
Query Start/End: Original strand, 37 - 219
Target Start/End: Original strand, 1969514 - 1969696
Alignment:
| Q |
37 |
gaaaatcagttaatttagtttagttagttgctactcccgtagatttgtctttaaacattctgaagcttaatgcatttagaaatgcttttgaatattgtct |
136 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1969514 |
gaaattcagttaatttagtttagttagttgctactcccgtagatttgtctttaaacattatgaagcttaatgcatttagaaatgcttttgaatattgtct |
1969613 |
T |
|
| Q |
137 |
tgatgccattttccaatctcctcctgtcttcatcattgccttaaattcctcaaaacttactcgaccatcctataacaaaacaa |
219 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
1969614 |
agatgccattttccaatctccttctgtcttcatcattgccttaaattcctcaaaacttactcgaccattctttaacaaaacaa |
1969696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 278 - 434
Target Start/End: Original strand, 1969782 - 1969938
Alignment:
| Q |
278 |
tcttaccttatccaagtcgacatcgttgagaatgtctctgatcacttggtcatcggtcgaaccattatctgataaggcatctttcaactcatcaaactca |
377 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||||| |||||||||||| |
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|
| T |
1969782 |
tcttaccttatccaagtctacatagttgagaatgtctcttatcacttggtcatcggtcgaaccatcatctgatagggaatctttcaattcatcaaactca |
1969881 |
T |
|
| Q |
378 |
acatatccactcttattcttgtcaaagaaattgaatgcttctgtgagatgctcatca |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1969882 |
acatatccactcttattcttgtcaaagaaattgaatgcttctgtgagatgctcatca |
1969938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 623 - 798
Target Start/End: Original strand, 1970069 - 1970243
Alignment:
| Q |
623 |
ttttggataatgacggaaatctgccaaaactttcctatgaaggattttgggttgtattcggttagtgattaactgttgcaatctatgaagcactgacacg |
722 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||| | ||||| ||||||||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
1970069 |
ttttggataatgatggaaatcagccaaaactttcctatgaaggaaatcgggttatattcggttagtgattaactgctgcaa-ctatgaagcactgacacg |
1970167 |
T |
|
| Q |
723 |
ccaacactaacaataatttgaggaaataaattaattgtctgtaatcacatgtgttggtgtcatgtcggacaccaga |
798 |
Q |
| |
|
|||||||||| |||||| || | ||||||||||| | |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1970168 |
ccaacactaataataatctgcgagaataaattaatcgagtgtaatcacacatgttggtgtcatgtcggacaccaga |
1970243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 499 - 610
Target Start/End: Original strand, 1969934 - 1970048
Alignment:
| Q |
499 |
catcaaaatctgcctgttgtcatcaattaacaaccaagttca---nnnnnnncattattgtaacaatgctctagacagaaaaagttcatataatttgtta |
595 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||| |||||||| || || ||||||||| |
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|
| T |
1969934 |
catcacaatctgcctgttgtcatcaattaataaccaagttcattttttttcatattatggtaacaatgctacagatagaaaaagatcgtagaatttgtta |
1970033 |
T |
|
| Q |
596 |
aagcaatatgaatct |
610 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
1970034 |
aagctatatgaatct |
1970048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 735 - 788
Target Start/End: Complemental strand, 24887468 - 24887415
Alignment:
| Q |
735 |
ataatttgaggaaataaattaattgtctgtaatcacatgtgttggtgtcatgtc |
788 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
24887468 |
ataatttgaggaaataaattaattgaatgttctcacatgtgtaggtgtcatgtc |
24887415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 735 - 788
Target Start/End: Complemental strand, 24937692 - 24937639
Alignment:
| Q |
735 |
ataatttgaggaaataaattaattgtctgtaatcacatgtgttggtgtcatgtc |
788 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||| | ||||||||||| |
|
|
| T |
24937692 |
ataatttgaggaaataaattaattgaatgttatcacatgcgcaggtgtcatgtc |
24937639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 713 - 800
Target Start/End: Complemental strand, 9878103 - 9878016
Alignment:
| Q |
713 |
cactgacacgccaacactaacaataatttgaggaaataaattaattgtctgtaatcacatgtgttggtgtcatgtcggacaccagaca |
800 |
Q |
| |
|
|||||||||| | |||| || ||||||||||| | || ||||||||| ||||||||| ||||| ||| |||||||||||| ||||| |
|
|
| T |
9878103 |
cactgacacgtcgacaccaataataatttgagaatatgaattaattgaatgtaatcacttgtgtcagtgccatgtcggacactagaca |
9878016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 735 - 782
Target Start/End: Original strand, 28322251 - 28322298
Alignment:
| Q |
735 |
ataatttgaggaaataaattaattgtctgtaatcacatgtgttggtgt |
782 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
28322251 |
ataatttgagaaaatgaattaattgaatgtaatcacatgtgttggtgt |
28322298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 762 - 795
Target Start/End: Original strand, 27733884 - 27733917
Alignment:
| Q |
762 |
tgtaatcacatgtgttggtgtcatgtcggacacc |
795 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
27733884 |
tgtaatcacaagtgttggtgtcatgtcggacacc |
27733917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 762 - 803
Target Start/End: Original strand, 13635611 - 13635652
Alignment:
| Q |
762 |
tgtaatcacatgtgttggtgtcatgtcggacaccagacacgc |
803 |
Q |
| |
|
||||||||||||| |||||||| |||| |||||||||||||| |
|
|
| T |
13635611 |
tgtaatcacatgttttggtgtcgtgtcagacaccagacacgc |
13635652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 762 - 791
Target Start/End: Original strand, 36895399 - 36895428
Alignment:
| Q |
762 |
tgtaatcacatgtgttggtgtcatgtcgga |
791 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
36895399 |
tgtaatcacatgtgttggtgtcatgtcgga |
36895428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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