View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4543-Insertion-3 (Length: 825)
Name: NF4543-Insertion-3
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543-Insertion-3 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 759; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 759; E-Value: 0
Query Start/End: Original strand, 7 - 825
Target Start/End: Complemental strand, 33811273 - 33810455
Alignment:
| Q |
7 |
aagggaaactatccttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811273 |
aagggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatc |
33811174 |
T |
|
| Q |
107 |
tgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgacctt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811173 |
tgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgacctt |
33811074 |
T |
|
| Q |
207 |
gaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttct |
306 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
33811073 |
gaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataaatttcttgattctggcctaactcttgcaggaacttct |
33810974 |
T |
|
| Q |
307 |
tcatccacatcatctccttacaaccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacacacttttgtagtcgcgattgccatgagac |
406 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
33810973 |
tcatccacatcatctccttacagccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacgcacttttgtagtcgagattgccatgagac |
33810874 |
T |
|
| Q |
407 |
agctccccctgcaaaagtaatcaaatatccagatgtagattttcttgaatctacatctccggccatatcagcatctacatatccaacgagcatttgattt |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810873 |
agctccccctgcaaaagtaatcaaatatccagatgtagattttcttgaatctatatctccggccatatcagcatctacatatccaacgagcatttgattt |
33810774 |
T |
|
| Q |
507 |
ccattgccaaaacataagcactttttggcagttccttttagatacctcagtatccatttcacagcactctagtgttcttttcctagatttgataggaatc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
33810773 |
ccattgccaaaacataagcactttttggcagttccttttagatacctcagtatccatttcacagcactccagtgttcttttcctggatttgataggaatc |
33810674 |
T |
|
| Q |
607 |
tactcacgactcctactacataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttc |
706 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810673 |
tactcacgactcctacagcataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttc |
33810574 |
T |
|
| Q |
707 |
ttctttctctcggtcattctcaggacattgtgtcttactgagtttcaaatgaccaggtaatggaacatgcacaggttttgcattatgcatgttgaacctt |
806 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33810573 |
ttctttctcttgatcattctcaggacattgtgtcttactgagtttcaaatgaccaggtaatggaacatgcacaggttttgcattatgcatgttgaacctt |
33810474 |
T |
|
| Q |
807 |
tcaagaactttcttgagat |
825 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33810473 |
tcaagaactttcttgagat |
33810455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 759; E-Value: 0
Query Start/End: Original strand, 7 - 825
Target Start/End: Complemental strand, 33816191 - 33815373
Alignment:
| Q |
7 |
aagggaaactatccttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816191 |
aagggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatc |
33816092 |
T |
|
| Q |
107 |
tgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgacctt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816091 |
tgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgacctt |
33815992 |
T |
|
| Q |
207 |
gaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttct |
306 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
33815991 |
gaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataaatttcttgattctggcctaactcttgcaggaacttct |
33815892 |
T |
|
| Q |
307 |
tcatccacatcatctccttacaaccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacacacttttgtagtcgcgattgccatgagac |
406 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
33815891 |
tcatccacatcatctccttacagccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacgcacttttgtagtcgagattgccatgagac |
33815792 |
T |
|
| Q |
407 |
agctccccctgcaaaagtaatcaaatatccagatgtagattttcttgaatctacatctccggccatatcagcatctacatatccaacgagcatttgattt |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33815791 |
agctccccctgcaaaagtaatcaaatatccagatgtagattttcttgaatctatatctccggccatatcagcatctacatatccaacgagcatttgattt |
33815692 |
T |
|
| Q |
507 |
ccattgccaaaacataagcactttttggcagttccttttagatacctcagtatccatttcacagcactctagtgttcttttcctagatttgataggaatc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
33815691 |
ccattgccaaaacataagcactttttggcagttccttttagatacctcagtatccatttcacagcactccagtgttcttttcctggatttgataggaatc |
33815592 |
T |
|
| Q |
607 |
tactcacgactcctactacataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttc |
706 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33815591 |
tactcacgactcctacagcataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttc |
33815492 |
T |
|
| Q |
707 |
ttctttctctcggtcattctcaggacattgtgtcttactgagtttcaaatgaccaggtaatggaacatgcacaggttttgcattatgcatgttgaacctt |
806 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33815491 |
ttctttctcttgatcattctcaggacattgtgtcttactgagtttcaaatgaccaggtaatggaacatgcacaggttttgcattatgcatgttgaacctt |
33815392 |
T |
|
| Q |
807 |
tcaagaactttcttgagat |
825 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33815391 |
tcaagaactttcttgagat |
33815373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 598; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 25 - 822
Target Start/End: Original strand, 4836208 - 4837005
Alignment:
| Q |
25 |
attagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattggt |
124 |
Q |
| |
|
||||||||||||||||| ||| || ||||||||||| |||||||||||||||||||| ||||| | |||||||||||| |||||||| || ||||| || |
|
|
| T |
4836208 |
attagtttggggttgctaccattccagcagcttgtttgcaaaactctatcttctctttcggtagcggttttgtcatcatgtctgctccattctcatttgt |
4836307 |
T |
|
| Q |
125 |
gtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattc |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836308 |
gtgaattttctctatttgcagcagtttattctctaacacatcacgtatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattc |
4836407 |
T |
|
| Q |
225 |
ttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctcct |
324 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| | ||||||| |
|
|
| T |
4836408 |
ttgctgaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcataactcttgtagaaacttcttcatccataggatctcct |
4836507 |
T |
|
| Q |
325 |
tacaaccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacacacttttgtagtcgcgattgccatgagacagctccccctgcaaaagt |
424 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| |||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836508 |
tacaaccttcagtgattgcgatgtattcagcttccgtggtactcaaagcaatgcacttttgtaatcgcgattgccatgagacagctccccctgcaaaagt |
4836607 |
T |
|
| Q |
425 |
aatcaaatatccagatgtagattttcttgaatctacatctccggccatatcagcatctacatatccaacgagcatttgatttccattgccaaaacataag |
524 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
4836608 |
aatcaaatatccggatgtagattttcttgaatccacatctccggccatatcagtatctacatatccagcgagcatttgatttcccttgccaaaacataaa |
4836707 |
T |
|
| Q |
525 |
cactttttggcagttccttttagatacctcagtatccatttcacagcactctagtgttcttttcctagatttgataggaatctactcacgactcctacta |
624 |
Q |
| |
|
|| ||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||| | |
|
|
| T |
4836708 |
catttttttaaagttccttttatatacctcagtatccatttcacagcactccagtgttcctttcctgggtttgataggaatctactcacgactcctacaa |
4836807 |
T |
|
| Q |
625 |
cataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttcttctttctctcggtcatt |
724 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
4836808 |
cataaccgatgtctggcctcgtgtagaccatggcgtacataaggctacccacagctgaagaatagggaaccttgctcatttcttctttctcttggtcatt |
4836907 |
T |
|
| Q |
725 |
ctcaggacattgtgtcttactgagtttcaaatgaccaggtaatggaacatgcacaggttttgcattatgcatgttgaacctttcaagaactttcttga |
822 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836908 |
ctcaggacattgtgtcttactgagtttcaaatgaccaggtagtggaacatgcataggttttgcattatgcatgttgaacctttcaagaactttcttga |
4837005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 24379927 - 24380105
Alignment:
| Q |
24 |
gattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattgg |
123 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||| |||||||||||| || ||||| || | ||||| |
|
|
| T |
24379927 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttgatagaggttttgtcatcatgtcggctccattcttattgg |
24380026 |
T |
|
| Q |
124 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttga |
202 |
Q |
| |
|
|||||| |||||||| || || || |||| |||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
24380027 |
tgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcattgtgttttga |
24380105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 24 - 822
Target Start/End: Original strand, 54967873 - 54968671
Alignment:
| Q |
24 |
gattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattgg |
123 |
Q |
| |
|
||||| |||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54967873 |
gattaatttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttctcattgg |
54967972 |
T |
|
| Q |
124 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaatt |
223 |
Q |
| |
|
|||||| |||||||| || || || |||| | |||||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||| || || |
|
|
| T |
54967973 |
tgtgaactttctctactttcaacaatttactttccaacacatcacgaatccagtgatacctcacatcaatgtgttttgatctggagtggtatgttgagtt |
54968072 |
T |
|
| Q |
224 |
cttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctcc |
323 |
Q |
| |
|
|||||| || |||||||| || ||||| || |||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
54968073 |
cttgctgagatgaattgcgctctgactgtcgcaatagagaacataactttcttgactttggcctaactcttgcaggaacttcttcatccacaggatctcc |
54968172 |
T |
|
| Q |
324 |
ttacaaccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacacacttttgtagtcgcgattgccatgagacagctccccctgcaaaag |
423 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||||||| ||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
54968173 |
ttacaaccttcagtgattgcgatgtattcagcttctgtggtactcaaagcaatgcacttttgtaatcgtgattgccatgaaacagctccccctgcaaaag |
54968272 |
T |
|
| Q |
424 |
taatcaaatatccagatgtagattttcttgaatctacatctccggccatatcagcatctacatatccaacgagcatttgatttccattgccaaaacataa |
523 |
Q |
| |
|
| ||||||||||| || ||||||||||| |||||||||||||| |||||||| |||||||||| |||| ||| | ||||||| |||||||||| | || |
|
|
| T |
54968273 |
tgatcaaatatccggaagtagattttctggaatctacatctcctgccatatctgcatctacatgcccaatgagtaattgattttcattgccaaagcgcaa |
54968372 |
T |
|
| Q |
524 |
gcactttttggcagttccttttagatacctcagtatccatttcacagcactctagtgttcttttcctagatttgataggaatctactcacgactcctact |
623 |
Q |
| |
|
|| | ||||||||||||| |||||||||||| |||||||||||||||| || | || ||||||||| |||| || |||||||||||||| |||||||| |
|
|
| T |
54968373 |
acattgtttggcagttcctcttagatacctcaatatccatttcacagcattccaatgctcttttcctggattcgacaggaatctactcacaactcctacc |
54968472 |
T |
|
| Q |
624 |
acataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttcttctttctctcggtcat |
723 |
Q |
| |
|
||||| | |||||||| || ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
54968473 |
gcataagcaatgtctggtcttgtgcaaaccattgcgtacataaggctacccacagctgaagaatagggcaccttgctcatttcttctttctcttggtcat |
54968572 |
T |
|
| Q |
724 |
tctcaggacattgtgtcttactgagtttcaaatgaccaggtaatggaacatgcacaggttttgcattatgcatgttgaacctttcaagaactttcttga |
822 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54968573 |
tctcaggacattgtgtcttactgagtttcaaatgaccaggtagtggaacatgcacaggttttgcattatgcatgttgaacctttcaagaactttcttga |
54968671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 24 - 822
Target Start/End: Complemental strand, 2274 - 1476
Alignment:
| Q |
24 |
gattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattgg |
123 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||| ||| |||||||| |||||||| || ||||||| |
|
|
| T |
2274 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactcaatcttctcttttggtagaggtttggtcatcatgtctgctccattctcattgg |
2175 |
T |
|
| Q |
124 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaatt |
223 |
Q |
| |
|
|||||| |||||||| || || || |||| |||||||||||||||||||||| |||||||||||||| || |||||||| || || || ||||| || || |
|
|
| T |
2174 |
tgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcaatatgttttgatctggagtgatatgttgagtt |
2075 |
T |
|
| Q |
224 |
cttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctcc |
323 |
Q |
| |
|
|||||| || ||||| || |||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| | |||||| |
|
|
| T |
2074 |
cttgctgagatgaatcgcgctttgactgtcgcaatagagaacatagctttcttgattttggcctaactcttgtaggaacttcttcatccataggatctcc |
1975 |
T |
|
| Q |
324 |
ttacaaccttcagtgattgcgatgtactctgcttctgtggtacttaaagcaacacacttttgtagtcgcgattgccatgagacagctccccctgcaaaag |
423 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| |||||||| ||||||| |||||||||| ||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
1974 |
ttacaaccttcagtgattgcgatgtattcagctttcgtggtactcaaagcaatgcacttttgtaatcgtgattgccatgaaacagctccccctgcaaaag |
1875 |
T |
|
| Q |
424 |
taatcaaatatccagatgtagattttcttgaatctacatctccggccatatcagcatctacatatccaacgagcatttgatttccattgccaaaacataa |
523 |
Q |
| |
|
| ||||||||||| || ||||||||||| |||||||||||||| |||||||| |||||||||| |||| ||| | ||||||| |||||||||| | || |
|
|
| T |
1874 |
tgatcaaatatccggaagtagattttctggaatctacatctcctgccatatctgcatctacatgcccaatgagtaattgattttcattgccaaagctcaa |
1775 |
T |
|
| Q |
524 |
gcactttttggcagttccttttagatacctcagtatccatttcacagcactctagtgttcttttcctagatttgataggaatctactcacgactcctact |
623 |
Q |
| |
|
|| | ||||||||||||| |||||||||||| ||||||||||||| || || | || ||||||||| |||| || |||||||||||||| |||||||| |
|
|
| T |
1774 |
acattgtttggcagttcctcttagatacctcaatatccatttcacatcattccaatgctcttttcctggattcgacaggaatctactcacaactcctacc |
1675 |
T |
|
| Q |
624 |
acataaccgatgtctggcctcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttcttctttctctcggtcat |
723 |
Q |
| |
|
||||| | |||||||| || ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1674 |
gcataagcaatgtctggtcttgtgcaaaccattgcgtacataaggcttcccacagctgaagaatagggcaccttgctcatttcttctttctcttggtcat |
1575 |
T |
|
| Q |
724 |
tctcaggacattgtgtcttactgagtttcaaatgaccaggtaatggaacatgcacaggttttgcattatgcatgttgaacctttcaagaactttcttga |
822 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1574 |
tctcaggacattgtgtcttattgagtttcaaatgaccaggtagtggaacatgcacaggttttgcattatgcatgttgaacctttcaagaactttcttga |
1476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 51 - 708
Target Start/End: Original strand, 22981829 - 22982486
Alignment:
| Q |
51 |
gcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtt |
150 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||| |||||||||||| |||||||| || ||||||||||||| |||||||| || || || || |
|
|
| T |
22981829 |
gcagcttgtttgcaaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctctactttcaacaatt |
22981928 |
T |
|
| Q |
151 |
tattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgact |
250 |
Q |
| |
|
|| |||||||||||||| ||| || || |||||||| || |||||||| || || || ||||||||||| |||||||| || ||||| ||||| ||||| |
|
|
| T |
22981929 |
tactctccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatgaatcgcactctgact |
22982028 |
T |
|
| Q |
251 |
atcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattgcgatgtac |
350 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
22982029 |
gtcgcaatagagaacatagcttttttgattctggcctaactcttgcaggaacttcttcatccacatgatctccttacaaccttcagtgattgtgatgtat |
22982128 |
T |
|
| Q |
351 |
tctgcttctgtggtacttaaagcaacacacttttgtagtcgcgattgccatgagacagctccccctgcaaaagtaatcaaatatccagatgtagattttc |
450 |
Q |
| |
|
|| |||||| ||||||| |||||||| || ||||||||||| |||||||| |||| |||||||||||||||||||||||||||||| | || ||||||| |
|
|
| T |
22982129 |
tcagcttctatggtactcaaagcaacgcatttttgtagtcgtgattgccaagagatagctccccctgcaaaagtaatcaaatatccttaagtcgattttc |
22982228 |
T |
|
| Q |
451 |
ttgaatctacatctccggccatatcagcatctacatatccaacgagcatttgatttccattgccaaaacataagcactttttggcagttccttttagata |
550 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||||| ||| ||| | ||||||| |||||||||| || || || | ||||||| ||||| ||||||| |
|
|
| T |
22982229 |
tggaatctacatctcctgccatatctgcatctacatgcgcaatgagtaattgattttcattgccaaagcacaaacattgtttggcaattcctcttagata |
22982328 |
T |
|
| Q |
551 |
cctcagtatccatttcacagcactctagtgttcttttcctagatttgataggaatctactcacgactcctactacataaccgatgtctggcctcgtgcag |
650 |
Q |
| |
|
|||||||||||||||||||||| || | || || ||| ||||||| || | ||||||||||| | |||||| ||||| | |||||||| || ||||| |
|
|
| T |
22982329 |
cctcagtatccatttcacagcattccaatgctccttttctagattcgacaataatctactcacaattcctaccgcataagcaatgtctggtcttgtgcaa |
22982428 |
T |
|
| Q |
651 |
accatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttctt |
708 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
22982429 |
accaatgcgtacataaggctacccacaacagaagaatagggcaccttgctcatttctt |
22982486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 51 - 708
Target Start/End: Complemental strand, 23806579 - 23805922
Alignment:
| Q |
51 |
gcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtt |
150 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||| |||||||||||| |||||||| || ||||||||||||| |||||||| || || || || |
|
|
| T |
23806579 |
gcagcttgtttgcaaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctctactttcaacaatt |
23806480 |
T |
|
| Q |
151 |
tattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgact |
250 |
Q |
| |
|
|| |||||||||||||| ||| || || |||||||| || |||||||| || || || ||||||||||| |||||||| || ||||| ||||| ||||| |
|
|
| T |
23806479 |
tactctccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatgaatcgcactctgact |
23806380 |
T |
|
| Q |
251 |
atcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattgcgatgtac |
350 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
23806379 |
gtcgcaatagagaacatagcttttttgattctggcctaactcttgcaggaacttcttcatccacatgatctccttacaaccttcagtgattgtgatgtat |
23806280 |
T |
|
| Q |
351 |
tctgcttctgtggtacttaaagcaacacacttttgtagtcgcgattgccatgagacagctccccctgcaaaagtaatcaaatatccagatgtagattttc |
450 |
Q |
| |
|
|| |||||| ||||||| |||||||| || ||||||||||| |||||||| |||| |||||||||||||||||||||||||||||| | || ||||||| |
|
|
| T |
23806279 |
tcagcttctatggtactcaaagcaacgcatttttgtagtcgtgattgccaagagatagctccccctgcaaaagtaatcaaatatccttaagtcgattttc |
23806180 |
T |
|
| Q |
451 |
ttgaatctacatctccggccatatcagcatctacatatccaacgagcatttgatttccattgccaaaacataagcactttttggcagttccttttagata |
550 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||||| ||| ||| | ||||||| |||||||||| || || || | ||||||| ||||| ||||||| |
|
|
| T |
23806179 |
tggaatctacatctcctgccatatctgcatctacatgcgcaatgagtaattgattttcattgccaaagcacaaacattgtttggcaattcctcttagata |
23806080 |
T |
|
| Q |
551 |
cctcagtatccatttcacagcactctagtgttcttttcctagatttgataggaatctactcacgactcctactacataaccgatgtctggcctcgtgcag |
650 |
Q |
| |
|
|||||||||||||||||||||| || | || || ||| ||||||| || | ||||||||||| | |||||| ||||| | |||||||| || ||||| |
|
|
| T |
23806079 |
cctcagtatccatttcacagcattccaatgctccttttctagattcgacaataatctactcacaattcctaccgcataagcaatgtctggtcttgtgcaa |
23805980 |
T |
|
| Q |
651 |
accatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttctt |
708 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
23805979 |
accaatgcgtacataaggctacccacaacagaagaatagggcaccttgctcatttctt |
23805922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 1105112 - 1105201
Alignment:
| Q |
128 |
aattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgt |
217 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||| | || ||||||| || |||| |||||||||||| ||| |||||||||| |
|
|
| T |
1105112 |
aattttctctatttaaagcagtttattctctaacacgtcatgtattcaatgatttcttacattgatgtgttttgatcttaaatggtatgt |
1105201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 1105017 - 1105101
Alignment:
| Q |
12 |
aaactatccttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttg |
96 |
Q |
| |
|
||||||| ||||||||| |||||| |||||| || ||||||| | |||| |||| |||| ||||| ||||||||||||||||| |
|
|
| T |
1105017 |
aaactatacttagattaatttgggattgctgtcaagcctgcaattgctttataaaaatctaacttcttttttggtagagcttttg |
1105101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 344 - 815
Target Start/End: Original strand, 25004185 - 25004652
Alignment:
| Q |
344 |
gatgtactctgcttctgtggtacttaaagcaacacacttttgtagtcgcgattgccatgagacagctccccctgcaaaagtaatcaaatatccagatgta |
443 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||| || |||||||||| |||| |||| ||||||||||||||||||| ||| | |
|
|
| T |
25004185 |
gatgtattatgcttctgtggtacttaaagcaacacacttttgtagtcatgacatccatgagacaactccacctgtaaaagtaatcaaatatccaaatgca |
25004284 |
T |
|
| Q |
444 |
gattttcttgaatctacatctccggccatatcagcatctacatatccaacgagcatttgatttccattgcc-aaaacataagcactttttggcagttcct |
542 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| | |||||||||||||| || ||||||| ||||||||| ||||||||||||||||||| | |||||| |
|
|
| T |
25004285 |
gatttccttgaatctacatctcccgccatatcaacttctacatatccaacaagaatttgatctccattgccaaaaacataagcactttttgcctgttcct |
25004384 |
T |
|
| Q |
543 |
tttagatacctcagtatccatttcacagcactctagtgttcttttcctagatttgataggaatctactcacgactcctactacataaccgatgtctggcc |
642 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||| |||| || ||| ||||||||||| || ||||| |||||| |||| | ||| | |
|
|
| T |
25004385 |
tttagatacctcagtatccatttcatagcactctagtgttcattttctaggttcgatttgaatctactcaaaac-cctacaacataatcgat-tatggtc |
25004482 |
T |
|
| Q |
643 |
tcgtgcagaccatggcgtacataaggctacccacggctgaagaatagggcaccttgctcatttcttctttctctcggtcattctcaggacattgtgtctt |
742 |
Q |
| |
|
||||||| |||||| | ||| |||| ||| |||| |||||||| |||| | || | |||||||||||| ||| |||||| || | | || | |||| |
|
|
| T |
25004483 |
tcgtgcaaaccatgacatacgtaagactatccacaactgaagaagagggaaactaacccatttcttctttttcttggtcat--tccgtagatattatctt |
25004580 |
T |
|
| Q |
743 |
actgagtttcaaatgaccaggtaatggaacatgcacaggttttgcattatgcatgttgaacctttcaagaact |
815 |
Q |
| |
|
||| ||||||||||||||| ||| ||||||||||||| || || ||| |||| ||||||| |||||| |||| |
|
|
| T |
25004581 |
actaagtttcaaatgacca-gtagtggaacatgcacaagtggtgtattttgcacgttgaacatttcaaaaact |
25004652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 180 - 342
Target Start/End: Original strand, 25003630 - 25003790
Alignment:
| Q |
180 |
tacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgat |
279 |
Q |
| |
|
||||||||||| |||||||| |||||||| || |||||||| || || || |||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
25003630 |
tacctcacatctatgtgttt-gaccttgattg-tatgtcgagttatttctgaggtgaattgcactttgactatcacaatagggaacataactttgttgat |
25003727 |
T |
|
| Q |
280 |
tctggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgattg |
342 |
Q |
| |
|
|| ||||| ||||||| | ||| |||||||||||| |||||||||||||| | |||||||| |
|
|
| T |
25003728 |
tcaggcctgactcttgcatgaacttcttcatccacgggatctccttacaaccgttagtgattg |
25003790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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