View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4543-Insertion-4 (Length: 802)
Name: NF4543-Insertion-4
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 518; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 8 - 667
Target Start/End: Complemental strand, 42780411 - 42779751
Alignment:
| Q |
8 |
gatagtaatggagctgctacaagcaaagcaacgagtttnnnnnnnntgtcgcagggagcagtaagggaagaagtggaagagggaaggggacaaatcgagc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42780411 |
gatagtaatggagctgctacaagcaaagcaacgagtttaaaaaaaatgtcgcagggagcagtaagggaagaagtggaagaggaaaggggacaaatcgagc |
42780312 |
T |
|
| Q |
108 |
tacagtgtccagcataataactaatgataatgagtggtcttgtgagcaatgtacctatgcaaacgtcggatctgccactgcatgtgcgatgtgttgtgta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42780311 |
tacagtgtccagcataataactaatgataatgagtggtcttgtgagcaatgtacctatgcaaacgtcggatctgccactgcatgtgcgatgtgttgtgta |
42780212 |
T |
|
| Q |
208 |
atcaacagtgtcaatgacccactacnnnnnnntgtcttttgttcaaaggcttgttagatgataaagttattgggctatgatattgggtccgttagtttag |
307 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42780211 |
atcaacagtgtcaatgacccactacaaaaaaatgtcttttgttcaaaggcttgttagatgataaagttattgggctatgttattgggtccgttagtttag |
42780112 |
T |
|
| Q |
308 |
agtcctttatgnnnnnnnnnnnnnnnnnn-gtatccttttgtaatgctaagctattagtattctatgaaaccctagctatcgtcgttgttttgttattgt |
406 |
Q |
| |
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||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42780111 |
agtcctttatgttttatttttattttttttgtacccttttgtaatgctaagctattagtattctatgaaaccctagctatcgtcgttgttttgttattgt |
42780012 |
T |
|
| Q |
407 |
ctttgaaacctagactattaacgtggtatcaagagctttgtttgatccatcttaaactacggttccgttattgagttctcaaaacatttgggaatataat |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42780011 |
ctttgaaacctagactattaacgtggtatcaagagctttgtttgatccatcttaaactacggttccgttattgagttctcaaaacatttgggaatataat |
42779912 |
T |
|
| Q |
507 |
tgcgttttttcttgaatgattggttcgaatttgcggcttttgttctagtgaagaaaattgaatttgttgcnnnnnnnngctagcaatatgtggtctattc |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42779911 |
tgcgttttttcttgaatgattggttcgaatttgcggcttttgttctagtgaagaaaattgaatttgttgcttttttttgctagcaatatgtggtctattc |
42779812 |
T |
|
| Q |
607 |
ttttgaatttgtgctgctgcgtttttgcgtctctattggtgccatttttggtggtggtaca |
667 |
Q |
| |
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| T |
42779811 |
ttttgaatttgtgctgctgcgtttttgcgtctctattggtgccatttttggtggtggtaca |
42779751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 725 - 802
Target Start/End: Complemental strand, 42779693 - 42779616
Alignment:
| Q |
725 |
gctacgaagtacttgttcctagcatctagttacgttgattttgatttagttgttgtcattgctttcatttagtctgta |
802 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42779693 |
gctacgaagtacttgttcctagcatctagttacgttgattttgatttagttgttgtcattgctttcatttagtctgta |
42779616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 42194723 - 42194910
Alignment:
| Q |
8 |
gatagtaatggagctgctacaagcaaagcaacgagtttnnnnnnnntgtcgcagggagcagtaagggaagaagtggaagagggaaggggacaaatcgagc |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| ||| |||||||| |||||||| || ||| |
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| T |
42194723 |
gatagtaatggagctgctacaagcaaagcaacgagtt--caaaaaatgcggcagggagcagtaaaggaaaaagcggaagaggaaaggggacgaa---agc |
42194817 |
T |
|
| Q |
108 |
tacagtgtccagcataataactaatgataatgagtggtcttgtgagcaatgtacctatgcaaacgtcggatctgccactgcatgtgcgatgtg |
200 |
Q |
| |
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||| |||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||| |
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| T |
42194818 |
taccgtgtccagcagattaactgatgataatgagtggtcttgtgagcaatgtacctatgcaaatgttggatctgccaccgcatgcgcgatgtg |
42194910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 1e-31; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 58 - 200
Target Start/End: Original strand, 29554288 - 29554421
Alignment:
| Q |
58 |
gcagggagcagtaagggaagaagtggaagagggaaggggacaaatcgagctacagtgtccagcataataactaatgataatgagtggtcttgtgagcaat |
157 |
Q |
| |
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||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||| ||||| ||||||||||||||| |||||||| || |
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| T |
29554288 |
gcagggagcagtaagggaagaagcggaagaggaaaggggacgaatcgagctaccgtgt---------taacttatgataatgagtggtattgtgagcgat |
29554378 |
T |
|
| Q |
158 |
gtacctatgcaaacgtcggatctgccactgcatgtgcgatgtg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| || ||||| |
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| T |
29554379 |
gtacctatgcaaacgtcggatctgccactgaatgcgccatgtg |
29554421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 392 - 654
Target Start/End: Original strand, 29554641 - 29554903
Alignment:
| Q |
392 |
ttgttttgttattgtctttgaaacctagactattaacgtggtatcaagagctttgtttgatccatcttaaactacggtt------ccgttattgagttct |
485 |
Q |
| |
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||||||||||||||||| ||||||||||| | ||||| ||||||||| ||||||||| |||||| ||| |||||||||| || ||||||||||| |
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| T |
29554641 |
ttgttttgttattgtctctgaaacctagattgttaacatggtatcaaaagctttgttcgatccaccttgaactacggtttcacttccattattgagttcc |
29554740 |
T |
|
| Q |
486 |
caaaacatttgggaatataattgcgttttttcttgaatgattggttcgaatttgcggcttttgttctagtgaagaaaattgaatttgttgcnnnnnnnn- |
584 |
Q |
| |
|
|||| ||| ||||| | || ||| ||| |||||||||| ||||||||| ||||||||| ||||||||||| ||| |||||| |
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| T |
29554741 |
taaaattttttagaataca------ttgttttttggatgattggttaaaatttgcggtttttgttctgttgaagaaaatttaatctgttgcttttgttca |
29554834 |
T |
|
| Q |
585 |
gctagcaatatgtggtctattcttttgaatttgtgctgctgcgtttttgcgtctctattggtgccatttt |
654 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| |
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| T |
29554835 |
gttagcaatatgtggtctattcttttgaatttgtgctgctgag-ttttgcgtcactattggtgccatttt |
29554903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 29539494 - 29539600
Alignment:
| Q |
82 |
ggaagagggaaggggacaaatcgagctacagtgtccagcataataactaatgataatgagtggtcttgtgagcaatgtacctatgcaaacgtcggatctg |
181 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
29539494 |
ggaagaggaaaggggacaaatcgagctaccgtgtccagcaaaataaccgttgataatgagtggtattgtgttgaatgtacctatgcaaacgtcggatctg |
29539593 |
T |
|
| Q |
182 |
ccactgc |
188 |
Q |
| |
|
||||||| |
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| T |
29539594 |
ccactgc |
29539600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 29539616 - 29539704
Alignment:
| Q |
138 |
tgagtggtcttgtgagcaatgtacctatgcaaacgtcggatctgccactgcatgtgcgatgtgttgtgtaatcaacagtgtcaatgacccacta |
231 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| || | |||| ||||||||| ||||||||||||||| |
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|
| T |
29539616 |
tgagtggtcttgtgggcaatgtacctatgcaaacatcggatctgccacagcatgcgc-----ggtgtgcaatcaacagcgtcaatgacccacta |
29539704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 29554424 - 29554487
Alignment:
| Q |
137 |
atgagtggtcttgtgagcaatgtacctatgcaaacgtcggatctgccactgcatgtgcgatgtg |
200 |
Q |
| |
|
||||||||||||||||| |||| || ||||||||||||||||||| ||||| ||| | |||||| |
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|
| T |
29554424 |
atgagtggtcttgtgagaaatgcacgtatgcaaacgtcggatctgtcactgaatgcgtgatgtg |
29554487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 728 - 768
Target Start/End: Original strand, 29554977 - 29555017
Alignment:
| Q |
728 |
acgaagtacttgttcctagcatctagttacgttgattttga |
768 |
Q |
| |
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||||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
29554977 |
acgaagtacttgttcctggcatctagttatgttgattttga |
29555017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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