View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4543-Insertion-5 (Length: 336)
Name: NF4543-Insertion-5
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543-Insertion-5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 336
Target Start/End: Original strand, 29104709 - 29105036
Alignment:
| Q |
9 |
cagcaataattctcaaatcatccacagcatcggaagaaatgcgttcgacttcagagatacaatcctctgcagcgcgaatatcatcttcttccggtgttcc |
108 |
Q |
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| T |
29104709 |
cagcaataattctcaaatcatccacagcatcggaagaaatgcgttcgacttcagagatacaatcctctgcagcgcgaatatcatcttcttccggtgttcc |
29104808 |
T |
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| Q |
109 |
tccatcaaaagaacagaaagaagttctggaggatccgacagagaaggattcagcgtctaagcaagcctggttcatggttaatatctggtaaaactctttt |
208 |
Q |
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| T |
29104809 |
tccatcaaaagaacagaaagaagttctggaggatccgacagagaaggattcagcgtctaagcaggcctggttcatggttaatatctggtaaaactctttt |
29104908 |
T |
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| Q |
209 |
tggagcctcttcatagcgatttgcattaggttttgtgcatggatgagtttcggagacgatggttcgagctcgagtaacgagtgcatggctctttgaagtt |
308 |
Q |
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| T |
29104909 |
tggagcctcttcatagcgatttgcattaggttttgagcatggatgagtttcggagacgatggttcgagctcgagtaacgagtgcatggctctttgaagtt |
29105008 |
T |
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| Q |
309 |
ggtgaacgtggtgaatatactgaatggc |
336 |
Q |
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||| |||||||||||||||||||||||| |
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| T |
29105009 |
ggttaacgtggtgaatatactgaatggc |
29105036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 336
Target Start/End: Original strand, 29090450 - 29090775
Alignment:
| Q |
11 |
gcaataattctcaaatcatccacagcatcggaagaaatgcgttcgacttcagagatacaatcctctgcagcgcgaatatcatcttcttccggtgttcctc |
110 |
Q |
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||||||||| ||||||||||||| |||||||||||| |||||| ||||||||||||||||||| |||| || || ||| || |||||| ||||||| | |
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| T |
29090450 |
gcaataattttcaaatcatccaccacatcggaagaaacgcgttcaacttcagagatacaatcctgtgcatcgtgatcatcgtcgtcttccagtgttccac |
29090549 |
T |
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| Q |
111 |
catcaaaagaacagaaagaagttctggaggatccgacagagaaggattcagcgtctaagcaagcctggttcatggttaatatctggtaaaactctttttg |
210 |
Q |
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| T |
29090550 |
catcaaaagaaccgaaagaagtgctaaaggatctgatggagaaggattcagagtctaagtatgcctggttcatggttaagatctggtagaattctttttg |
29090649 |
T |
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| Q |
211 |
gagcctcttcatagcgatttgcattaggttttgtgcatggatgagtttcggagacgatggttcgagctcgagtaacgagtgcatggctctttgaagttgg |
310 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29090650 |
gagcctcttcatagcaatttgcattaggttttgtgcgtggatgagttctggagacgatggttcgagctcgagtaacgagtgcatggctctttgaagttgg |
29090749 |
T |
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| Q |
311 |
tgaacgtggtgaatatactgaatggc |
336 |
Q |
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| T |
29090750 |
ttaacgtggtgaatgtactgaatggc |
29090775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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