View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4543-Insertion-7 (Length: 275)
Name: NF4543-Insertion-7
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543-Insertion-7 |
 | |
|
| [»] chr3 (13 HSPs) |
| |
|
| [»] scaffold0425 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 275
Target Start/End: Original strand, 8590407 - 8590676
Alignment:
| Q |
6 |
cacaaggaccttctcccaatcccaactctttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctagtttcaaatggatctgtagt |
105 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
8590407 |
cacagggaccttctcccaatcccaactttttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctggtttcaaatggatttgtagt |
8590506 |
T |
|
| Q |
106 |
taaaactgaaacgaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttgg |
205 |
Q |
| |
|
|||| ||||||| ||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8590507 |
taaagctgaaaccaagcccaataaattgctgctaagtggttcagatttagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttgg |
8590606 |
T |
|
| Q |
206 |
tctgcttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgcttta |
275 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
8590607 |
tctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgcttcggtactgcttta |
8590676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 6553785 - 6553520
Alignment:
| Q |
10 |
aggaccttctcccaatcccaactctttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctagtttcaaatggatctgtagttaaa |
109 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
6553785 |
aggaccttctcccaatctcaaatctttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctacattcaaatggatttgtagttaaa |
6553686 |
T |
|
| Q |
110 |
actgaaacgaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctg |
209 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6553685 |
gctgaaacgaaacccaataaattggtggtaagtggttcagattcagctttttgcttatttatcattgcatcagtagaaatctcatctaatagttggtctg |
6553586 |
T |
|
| Q |
210 |
cttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgcttta |
275 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6553585 |
cctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttta |
6553520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 6736672 - 6736937
Alignment:
| Q |
10 |
aggaccttctcccaatcccaactctttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctagtttcaaatggatctgtagttaaa |
109 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
6736672 |
aggaccttctcccaatctcaaatctttcttttgctttgcaagaagttctagtttatcgagctgttcattgagcctacattcaaatggatttgtagttaaa |
6736771 |
T |
|
| Q |
110 |
actgaaacgaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctg |
209 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6736772 |
gctgaaaccaagcccaataaattggtggtaagtggttcagattcagctttcaccttatttagcattgcatcagtagaaatctcatccaatagttggtctg |
6736871 |
T |
|
| Q |
210 |
cttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgcttta |
275 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6736872 |
cttcataaagaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttta |
6736937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 275
Target Start/End: Original strand, 8455332 - 8455601
Alignment:
| Q |
6 |
cacaaggaccttctcccaatcccaactctttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctagtttcaaatggatctgtagt |
105 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| | ||| |
|
|
| T |
8455332 |
cacaaggaccttctcccaatctcaactctttccttttctttgcaagaaattctagtttatccagttgttcattgagcctagattcaaatggatttctaga |
8455431 |
T |
|
| Q |
106 |
taaaactgaaacgaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttgg |
205 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8455432 |
taaagctgaaaccaagcccaataaattggtggtaagtggttcagattctgctttcaggttatttagcattgcatcagtagaaatctcatctaatagttgg |
8455531 |
T |
|
| Q |
206 |
tctgcttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgcttta |
275 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8455532 |
tctgcttcataaacaacatgtttaagatcatcaagccacttcttcacatatttgttttggtactgcttta |
8455601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 6479328 - 6479064
Alignment:
| Q |
11 |
ggaccttctcccaatcccaactctttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctagtttcaaatggatctgtagttaaaa |
110 |
Q |
| |
|
||||||||| ||||||||||| | | ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
6479328 |
ggaccttctgccaatcccaacacctacttttgcattgcaagaaattctagtttatccagttgttcattgagcctagattcaaatggatttgtagttaaag |
6479229 |
T |
|
| Q |
111 |
ctgaaacgaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgc |
210 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6479228 |
ctgaaaccacgcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagatatctcatctaatagttggtctgc |
6479129 |
T |
|
| Q |
211 |
ttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgcttta |
275 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
6479128 |
ttcataaacaacatgtttaagtttatcaagccacttcttcacatatatgatttggtactgcttta |
6479064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 254
Target Start/End: Original strand, 6947949 - 6948195
Alignment:
| Q |
8 |
caaggaccttctcccaatcccaactctttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctagtttcaaatggatctgtagtta |
107 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
6947949 |
caaggactttctcccaatcccaactctttctttttctttgcaagaagttctagtttatcgagctgttcattgagcctacattcaaatggatttgtagtta |
6948048 |
T |
|
| Q |
108 |
aaactgaaacgaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtc |
207 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6948049 |
aagctgaaaccaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtc |
6948148 |
T |
|
| Q |
208 |
tgcttcataaacaacatgtttaagtccatcaagccacttcttcacat |
254 |
Q |
| |
|
||| ||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6948149 |
tgcctcatagacaacatgtttaagttcatcaagccacttcttcacat |
6948195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 6 - 273
Target Start/End: Complemental strand, 6519513 - 6519246
Alignment:
| Q |
6 |
cacaaggaccttctcccaatcccaactctttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctagtttcaaatggatctgtagt |
105 |
Q |
| |
|
|||||||||| || ||||||||| | |||| |||| | ||||||| ||||||| | |||||| ||| ||||||||||| ||||||||||| | ||| |
|
|
| T |
6519513 |
cacaaggaccaacttccaatcccagccttttcgtttgttgtgcaagagattctagtgtctccagtagtttattgagcctagattcaaatggatttccagt |
6519414 |
T |
|
| Q |
106 |
taaaactgaaacgaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttgg |
205 |
Q |
| |
|
|||| ||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
6519413 |
taaagctgaaacccagccaaataaattggtggtaagtggttcagattcagctttcaacttatatatcattgcatcagtagaaatctcatctaatagttgg |
6519314 |
T |
|
| Q |
206 |
tctgcttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgctt |
273 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6519313 |
tctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctt |
6519246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 271
Target Start/End: Original strand, 5281466 - 5281594
Alignment:
| Q |
143 |
ggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagtccatcaagcc |
242 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||| ||||||| ||||||||| || | ||||||||| ||||| ||| |||||||||| ||||||||| |
|
|
| T |
5281466 |
ggttcagattcatctttcagcttattcagttgtgcgtcagtagcaatctcatcgaaaatttggtctgcctcatatacagcatgtttaagatcatcaagcc |
5281565 |
T |
|
| Q |
243 |
acttcttcacatatttgttttggtactgc |
271 |
Q |
| |
|
||||||| |||||| || ||| ||||||| |
|
|
| T |
5281566 |
acttctttacatatgtgcttttgtactgc |
5281594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 8480045 - 8479979
Alignment:
| Q |
184 |
agaaatctcatctaatagttggtctgcttcataaacaacatgtttaagtccatcaagccacttcttc |
250 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| || |||||| |
|
|
| T |
8480045 |
agaaatctcatgtaatagttggtttgcttcataaacaacatgtttaagttcatcaagtcaattcttc |
8479979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 5299587 - 5299674
Alignment:
| Q |
187 |
aatctcatctaatagttggtctgcttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgcttt |
274 |
Q |
| |
|
||||||||| || ||||| ||||||||||| |||||||||||||| || |||||||||||||||| ||| | ||||||| |||||| |
|
|
| T |
5299587 |
aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgcttt |
5299674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 5250981 - 5251111
Alignment:
| Q |
143 |
ggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagtccatcaagcc |
242 |
Q |
| |
|
|||| |||||||||||||||||| || || ||||||||| | |||||||||||| || ||||| | ||||| || ||||||||| ||||||||| |
|
|
| T |
5250981 |
ggttgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagcc |
5251080 |
T |
|
| Q |
243 |
acttcttcacatatttgttttggtactgctt |
273 |
Q |
| |
|
|||||||||| || || ||||||| ||||| |
|
|
| T |
5251081 |
acttcttcacgtacatgctttggtattgctt |
5251111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 275
Target Start/End: Original strand, 6917935 - 6918031
Alignment:
| Q |
179 |
tcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgcttta |
275 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||||||| || | ||||| || |||||||||| |||||||| | | ||||||||||||||||| |
|
|
| T |
6917935 |
tcagtagaaatcacatctagaagttggtctacttcatatacctcgtgtttgagatcatcaagccaattcttcacgtctcggttttggtactgcttta |
6918031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 8568144 - 8568067
Alignment:
| Q |
197 |
aatagttggtctgcttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgcttt |
274 |
Q |
| |
|
|||||||| || ||||||| || ||||||| ||| || |||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
8568144 |
aatagttgctcaacttcatatacctcatgttttagtttatgaagccagttcttcacatatgtgttttggtactgcttt |
8568067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 6824 - 6559
Alignment:
| Q |
10 |
aggaccttctcccaatcccaactctttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctagtttcaaatggatctgtagttaaa |
109 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
6824 |
aggaccttctcccaatctcaaatctttcttttgctttgcaagaagttctagtttatccagttgttcattgagcctacattcaaatggatttgtagttaaa |
6725 |
T |
|
| Q |
110 |
actgaaacgaagcccaataaattggtggtaagtggttcagattcagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctg |
209 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6724 |
gctgaaaccaaacccaataaattggtggtaagtggttcagattcagctttttgcttatttatcattgcatcagtagaaatctcatctaatagttggtctg |
6625 |
T |
|
| Q |
210 |
cttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactgcttta |
275 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6624 |
cctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttta |
6559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 41068482 - 41068416
Alignment:
| Q |
202 |
ttggtctgcttcataaacaacatgtttaagtccatcaagccacttcttcacatatttgttttggtactg |
270 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||| |||||||||||| || |||||||||| |
|
|
| T |
41068482 |
ttggtctgcttca--aacaacatgtttaagttcatcaagccaattcttcacatatatgctttggtactg |
41068416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 41068592 - 41068553
Alignment:
| Q |
10 |
aggaccttctcccaatcccaactctttcttttgctttgca |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41068592 |
aggaccttctcccaatcccaactctttcttttgctttgca |
41068553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 19936185 - 19936232
Alignment:
| Q |
184 |
agaaatctcatctaatagttggtctgcttcataaacaacatgtttaag |
231 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19936185 |
agaaatctcatgtaatagttggtttgcttcataaacaacatgtttaag |
19936232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3083 times since January 2019
Visitors: 8656