View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4543_high_1 (Length: 506)
Name: NF4543_high_1
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 88 - 243
Target Start/End: Original strand, 19371016 - 19371171
Alignment:
| Q |
88 |
cctgctaccacggggcataaatagtgtactgcttttgcttcacttaaatgataaatctcaatctatcattctagtgtttgcttccgtaatgcctaccaga |
187 |
Q |
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| T |
19371016 |
cctgctaccttggggcataaatagtgtacagcttttgcttcacttaaatgataaatctcaatctatcattctagtgtttgcttccataatgcctagcaga |
19371115 |
T |
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| Q |
188 |
gaatgctttgttcttttattgagttcatttttcaaaattaaatcttttgaataaac |
243 |
Q |
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| T |
19371116 |
gaatgctttgttcatttattgaattcatttttcaaaattaaatctttcgaataaac |
19371171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 253 - 409
Target Start/End: Complemental strand, 42198655 - 42198493
Alignment:
| Q |
253 |
tgtttttgtgaattctgttagaatgatctctcggt--tagttacatgaggttgaatagtctatttata----taagctaactgcctctagctggatgaca |
346 |
Q |
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| T |
42198655 |
tgtttttgtgaattctgttagattgatttcttagtcttaattacattaggttgaaaagtctatttatagacataaactaactgcctctagctgactgaca |
42198556 |
T |
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| Q |
347 |
cgtgttagtcagcaactcctagatgactggcagatgccagataatccagttagacggttacac |
409 |
Q |
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| T |
42198555 |
agcgtcagtcagcaactcctagatgattggcagttgccagttaatacagttagacagttacac |
42198493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 317
Target Start/End: Original strand, 19371661 - 19371720
Alignment:
| Q |
258 |
ttgtgaattctgttagaatgatctctcggttagttacatgaggttgaatagtctatttat |
317 |
Q |
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| T |
19371661 |
ttgtgagttctgttagcatgatttcttagttagttacatgaggttgaagagtctatttat |
19371720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 429 - 482
Target Start/End: Original strand, 19371808 - 19371861
Alignment:
| Q |
429 |
gatcgttctgatcacaatctgcctatactaagctattccttcaataggtattga |
482 |
Q |
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| T |
19371808 |
gatcattctgatcacaatctactaatactaagctattccttcaataagtattga |
19371861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 427
Target Start/End: Complemental strand, 21200177 - 21199984
Alignment:
| Q |
247 |
tataactgtttttgtgaattctgttagaatgatctctcggt------tagttacatgaggttgaata---gtctatttata----taagctaactgcctc |
333 |
Q |
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| T |
21200177 |
tataactgtttttgtgaattctgttagattgatttcttagtcttagttagttacatgaggttgaaaaaaagtctatttatagacataaactaactgcctc |
21200078 |
T |
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| Q |
334 |
tagctggatgacacgtgttagtcagcaactcctagatgactggcagatgccagataatccagttagacggttacacagggagagtaatctagtg |
427 |
Q |
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| T |
21200077 |
tagctgactgacaagcgtcattcggcacctcctagatgattggcagttgccagataacacagttagacagttacacacggagagtaatctagtg |
21199984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 427
Target Start/End: Complemental strand, 11521620 - 11521557
Alignment:
| Q |
364 |
cctagatgactggcagatgccagataatccagttagacggttacacagggagagtaatctagtg |
427 |
Q |
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| T |
11521620 |
cctaggtgactggcagttgctagttaatacagttggacagttacacagggagagtaatatagtg |
11521557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 11521733 - 11521660
Alignment:
| Q |
243 |
ctgttataactgtttttgtgaattctgttagaatgatctctcggttagttacatgaggttgaatagtctatttat |
317 |
Q |
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| T |
11521733 |
ctgttgtaactgttttc-tgaattctgttagaatgatttctcaatcagttacatgaggttgatgagtgtatttat |
11521660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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