View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4543_high_12 (Length: 291)
Name: NF4543_high_12
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 3830887 - 3831074
Alignment:
| Q |
9 |
acatcatcaccaggaaaacgactttgaataaatgacatcatatttgccataatcaaatttgtcctctgttgatttttaagcatttgcttaagtttaccgc |
108 |
Q |
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| T |
3830887 |
acatcttcaccaggaaaacgactttgaataaatgacatcatatttgccataatcaaatttgtcctctgttgatttttaagcatttgcttaagtttaccgc |
3830986 |
T |
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| Q |
109 |
gcaattcttcagttaccgtagctgccatagctagttcatctgctacttcaaataacttcacgataaaaaacatacaaaacaatcaaac |
196 |
Q |
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| T |
3830987 |
gcaattcttcagttaccgtagctgccatagctagttcatctgctacttcaaataacttcacgataaaaaacatacaaaacaatcaaac |
3831074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 3831080 - 3831147
Alignment:
| Q |
224 |
aatgagagatcattgcatgcgtaaaaagaacattaaggggtgttgagagaagaaaagtttacgaattc |
291 |
Q |
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| T |
3831080 |
aatgagagaccattgcatgcgtaaaaagaacattaaggtgtgttgagagaagaaaactttacgaattc |
3831147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 3836688 - 3836781
Alignment:
| Q |
9 |
acatcatcaccaggaaaacgactttgaataaatgacatcatatttgccataatcaaatttgtcctctgttgatttttaagcatttgcttaagtt |
102 |
Q |
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||||| ||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||| | |||||| ||| |||| |
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| T |
3836688 |
acatcctcaccagaaaaacgattttgaataaatgacatcatattttccataatcaaatttgtcttctcttgattttcacgcattttctttagtt |
3836781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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