View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4543_high_2 (Length: 504)
Name: NF4543_high_2
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 39338213 - 39338516
Alignment:
| Q |
14 |
agagaggagtatagtataaagcagatacaaaaagaaaaaggaagaggtatttgtgtgttgtgtacagagcaaaagccaaaggtaacataacataacataa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39338213 |
agagaggagtatagtataaagcagatacaaaaagaaaaaggaagaggtatttgtgtgttgtgtacagagcaaaagccaaaggtaacataacataacataa |
39338312 |
T |
|
| Q |
114 |
caacatagaatagaatctattatgcttctatgtttgtattgataacacatcaccaactataagatcatnnnnnnnnnnnnnnnncttgatcagctttatg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39338313 |
caacatagaatagaatctattatgcttctatgtttgtattgataacacatcaccaactataagatcatagagagagaagagagacttgatcagctttatg |
39338412 |
T |
|
| Q |
214 |
ttctttgattatttctctttat---ttcttctttggtgatgacaacgttgatcacttaaactttgtctttagttgaaggattaagaagaatttaagaggt |
310 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39338413 |
ttctgtgattatttctctttatttcttcttctttggtgatgacaacgttgatcacttaaactttgtctttagttgaaggattaagaagaatttaagaggt |
39338512 |
T |
|
| Q |
311 |
taca |
314 |
Q |
| |
|
|||| |
|
|
| T |
39338513 |
taca |
39338516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 346 - 486
Target Start/End: Original strand, 39338551 - 39338691
Alignment:
| Q |
346 |
atggcagcattgtcattttcagtggcatctgttgttgaggatgttcttcaacagcatggcactcgtcttaaagatcttgatttggaatctagaaaatcag |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39338551 |
atggcagcattgtcattttcagtggcatctgttgttgaggatgttcttcaacagcatggcactcgtcttaaagatcttgatttggaatctagaaaatcag |
39338650 |
T |
|
| Q |
446 |
aagaagctggtaattattatcattttctctctgatattggt |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39338651 |
aagaagctggtaattattatcattttctctctgatattggt |
39338691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 361 - 462
Target Start/End: Complemental strand, 44591279 - 44591178
Alignment:
| Q |
361 |
ttttcagtggcatctgttgttgaggatgttcttcaacagcatggcactcgtcttaaagatcttgatttggaatctagaaaatcagaagaagctggtaatt |
460 |
Q |
| |
|
|||||||| || ||||||||||| ||||| |||||||| || || |||||| ||||||||||||| |||||||||||| || || |||||||||||| |
|
|
| T |
44591279 |
ttttcagttgcgtctgttgttgaagatgtgcttcaacaacacggtcatcgtctccaagatcttgatttagaatctagaaaagcacaacaagctggtaatt |
44591180 |
T |
|
| Q |
461 |
at |
462 |
Q |
| |
|
|| |
|
|
| T |
44591179 |
at |
44591178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3130 times since January 2019
Visitors: 8656