View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4543_high_24 (Length: 209)
Name: NF4543_high_24
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 10892121 - 10891915
Alignment:
| Q |
1 |
tcatcattatctttaatatacaattttgaaagataagtaaggctttggaaatccggttcaattaacggcggcatttttgttattctcacagatgtaatag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
10892121 |
tcatcattatctttaatatacaattttgaaagataagtaaggctttggaaaccccattcaattaatggcggcatttttgttattctcacagatttaatag |
10892022 |
T |
|
| Q |
101 |
aaatggtttgtaatttgggaagtaataatactccttcgcatggtgcaaactctagttttcgaagatggtggagactcaaacattcaagagaggtgatgat |
200 |
Q |
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|||||||||||||||||||| |||| || |||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| | | |
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| T |
10892021 |
aaatggtttgtaatttgggaggtaagaaaactccttcgcatggtgcaaactctagttttggaagctgatggagactcaaacattcaagagaggtgagggt |
10891922 |
T |
|
| Q |
201 |
gtccatc |
207 |
Q |
| |
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||||||| |
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| T |
10891921 |
gtccatc |
10891915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 11157274 - 11157480
Alignment:
| Q |
1 |
tcatcattatctttaatatacaattttgaaagataagtaaggctttggaaatccggttcaattaacggcggcatttttgttattctcacagatgtaatag |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
11157274 |
tcatcattatctttaatatacaaatttgaaagataagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaatag |
11157373 |
T |
|
| Q |
101 |
aaatggtttgtaatttgggaagtaataatactccttcgcatggtgcaaactctagttttcgaagatggtggagactcaaacattcaagagaggtgatgat |
200 |
Q |
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|||| ||||||||||||||| |||| || |||||||| || ||||||||||||||||| |||||||||||||| ||| | |||||||| ||||| | | |
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| T |
11157374 |
aaattgtttgtaatttgggaggtaagaaaactccttcatatagtgcaaactctagttttggaagatggtggagatacaatctttcaagagcggtgagggt |
11157473 |
T |
|
| Q |
201 |
gtccatc |
207 |
Q |
| |
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||||||| |
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| T |
11157474 |
gtccatc |
11157480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 11128283 - 11128478
Alignment:
| Q |
1 |
tcatcattatctttaatatacaattttgaaagataagtaaggctttggaaatccggttcaattaacggcggcatttttgttattctcacagatgtaatag |
100 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||| ||||||||||||||||| || ||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
11128283 |
tcatcattctctttaatatacaaatatgaaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaatag |
11128382 |
T |
|
| Q |
101 |
aaatggtttgtaatttgggaagtaataatactccttcgcatggtgcaaactctagttttcgaagatggtggagactcaaacattcaagagaggtga |
196 |
Q |
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|||| ||||||||||||||| |||| || |||||||| ||| ||| |||||||||||| |||||||||||||| |||| |||||||| ||||| |
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| T |
11128383 |
aaattgtttgtaatttgggaggtaagaaaactccttcacatagtgacaactctagttttggaagatggtggagatacaaaatttcaagagtggtga |
11128478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 8864101 - 8863895
Alignment:
| Q |
1 |
tcatcattatctttaatatacaattttgaaagataagtaaggctttggaaatccggttcaattaacggcggcatttttgttattctcacagatgtaatag |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||| |||||||| ||||||||||| |||||||||||| |
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| T |
8864101 |
tcatcattatctttaatatacaaatttgaaagataagtaaggctttggaaaccccattcaattaatggcggcatctttgttattcttacagatgtaatat |
8864002 |
T |
|
| Q |
101 |
aaatggtttgtaatttgggaagtaataatactccttcgcatggtgcaaactctagttttcgaagatggtggagactcaaacattcaagagaggtgatgat |
200 |
Q |
| |
|
|||| ||||| ||||||||| |||| || |||||||| || |||||||||| |||||| ||||||||| || | ||| | |||||||| ||||| | | |
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|
| T |
8864001 |
aaattgtttgcaatttgggaggtaagaaaactccttcatatagtgcaaactcaagttttggaagatggtagaaatgcaatctttcaagagtggtgagggt |
8863902 |
T |
|
| Q |
201 |
gtccatc |
207 |
Q |
| |
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||||||| |
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|
| T |
8863901 |
gtccatc |
8863895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 11146105 - 11146297
Alignment:
| Q |
1 |
tcatcattatctttaatatacaattttgaaagataagtaaggctttggaaatccgg---ttcaattaacggcggcatttttgttattctcacagatgtaa |
97 |
Q |
| |
|
||||||||||||| ||| | ||| |||| |||| ||||||||||||||||| || ||||||||| |||||||| ||||||||||||||||||| || |
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| T |
11146105 |
tcatcattatcttcaattttcaaatttgtaagagaagtaaggctttggaaacccccccattcaattaatggcggcatctttgttattctcacagatgcaa |
11146204 |
T |
|
| Q |
98 |
tagaaatggtttgtaatttgggaagtaataatactccttcgcatggtgcaaactctagttttcgaagatggtggagactcaaacattcaagag |
190 |
Q |
| |
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||||||| ||||||||||||||| |||| || |||||||| ||| ||| |||||||||||| |||||||| |||||||||||| |||||||| |
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| T |
11146205 |
tagaaattgtttgtaatttgggaggtaagaaaactccttcacatagtgacaactctagttttggaagatggcggagactcaaactttcaagag |
11146297 |
T |
|
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