View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4543_high_6 (Length: 339)
Name: NF4543_high_6
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 19736353 - 19736048
Alignment:
| Q |
15 |
aaaatatacgcaacattattttaagaaagtcaagtcaaatgtgattgatcttgtatttgaactaaatacatttgactttctgactatatttttcataaat |
114 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
19736353 |
aaaatataagcaacattatttcaagaaagtcaagtcaaatgtgtttggccttgtatttgaactaaatacatttgactttttgaatatatttttcataaat |
19736254 |
T |
|
| Q |
115 |
tttgttattgaatgagtgattgatgatgttgtgtatttcatcctttcctcatgttatagcattccattattcannnnnnnnnnnnnnnncatagtgtgtg |
214 |
Q |
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| T |
19736253 |
tttgttatttaatgagtgattgatgatgttgtgtatttcatcctttcctcatgttatagcattccaatattcattttttatgtttttttcatagtgtgtg |
19736154 |
T |
|
| Q |
215 |
ccatcacttaattcataatataaaactatatttattaaaataattagtatagataacttactttgaatattataatttaatactatgttttaaataaagt |
314 |
Q |
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|||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19736153 |
ccattacttaattcaaaatataaaactatatttagtaaaataattagtatagataacttactttgaatattataatttaatactatgttttgaataaagt |
19736054 |
T |
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| Q |
315 |
caagtc |
320 |
Q |
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|||||| |
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| T |
19736053 |
caagtc |
19736048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 19736032 - 19735929
Alignment:
| Q |
27 |
acattattttaagaaagtcaagtcaaatgtgattgatcttgtatttgaactaaatacatttgactttctgactatatttttcataaattttgttattgaa |
126 |
Q |
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||||||||| | |||||||||||||| |||| ||||||||||||||| | ||||||||||||| || ||| |||||||| ||||||||||||||||||| |
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| T |
19736032 |
acattatttcatgaaagtcaagtcaagtgtgtttgatcttgtatttgtcc-aaatacatttgaccttttgaatatattttccataaattttgttattgaa |
19735934 |
T |
|
| Q |
127 |
tgagt |
131 |
Q |
| |
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|||| |
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| T |
19735933 |
ggagt |
19735929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 141 - 320
Target Start/End: Complemental strand, 19736540 - 19736359
Alignment:
| Q |
141 |
tgttgtgtatttcatcctttcctcatgttatagcattccattattcannnnnnnnnnnnnnnncatagtgtgtgccatcacttaattc--ataatataaa |
238 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| || ||||||||| | |||||||| |
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| T |
19736540 |
tgttgtgtatttcatcctttcctcaatttatagcattccattattcatttttatgcttttttccatagggtgtttgattacttaattctcaaaatataaa |
19736441 |
T |
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| Q |
239 |
actatatttattaaaataattagtatagataacttactttgaatattataatttaatactatgttttaaataaagtcaagtc |
320 |
Q |
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|||||||||| ||||||||||||||| ||| | ||||||||||| || ||||||||||| || ||||| | ||||| ||||| |
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| T |
19736440 |
actatatttagtaaaataattagtatggatgaattactttgaatgttttaatttaataccatattttatagaaagttaagtc |
19736359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 23108057 - 23108003
Alignment:
| Q |
244 |
atttattaaaataattagtatagataacttactttgaatattataatttaatact |
298 |
Q |
| |
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||||| |||||||||||||||| || | ||||||||||| ||||||||||||||| |
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| T |
23108057 |
atttaataaaataattagtataaatgatttactttgaattttataatttaatact |
23108003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 23109459 - 23109518
Alignment:
| Q |
241 |
tatatttattaaaataattagtatagataacttactttgaatattataatttaatactat |
300 |
Q |
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|||||||| | ||||||||| ||||||| | ||||||||||| |||||| |||||||||| |
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| T |
23109459 |
tatatttaatgaaataattaatatagatgatttactttgaattttataaattaatactat |
23109518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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