View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4543_low_14 (Length: 319)
Name: NF4543_low_14
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 37617057 - 37617350
Alignment:
| Q |
8 |
ttgaagtagcagcggaggnnnnnnncttacatgaacaaaacacataatgcagcataacagacactgacaaccacgaagaaaaagcttcctcatgtccgaa |
107 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||| |||||| || |||||| |||||||||||||||| ||||||||||||| |
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|
| T |
37617057 |
ttgaagtagcagcggaggaaaaaaacttacataaacaaaacacataatgcagtataacacacgctgacagccacgaagaaaaagctccctcatgtccgaa |
37617156 |
T |
|
| Q |
108 |
catataaacttaattcttggacatataaacttaagtcttcttaattcaaatacgatctaaaaacacatcaactaccaacactatatagcaatttgaaaat |
207 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37617157 |
catataagcttaagtcttggacatataagcttaagtcttcttaattcaaatacgatctaaaaacacatcaactaccaacactatatagcaatttgaaaat |
37617256 |
T |
|
| Q |
208 |
gagatagataacaccatctgtcaagacacattctcaacataaaatatcatgctaaataactttttgagttataggttgctttaagttccaaatg |
301 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| |
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|
| T |
37617257 |
gagatacataacaccatctatcaagacacattctcaacataaaatatcatgctaaatagctttttgagttataggctgctttaagatccaaatg |
37617350 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 22082925 - 22082625
Alignment:
| Q |
1 |
cctgaatttgaagtagcagcggaggnnnnnnncttacatgaacaaaacacataatgcagcataacagacactgacaaccacgaagaaaaagcttcctcat |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| ||||||||| |||||||||||||||| |||||| |
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|
| T |
22082925 |
cctgaatttgaagtagcagcggagaaaaaaaacttacataaacaaaacacataatgcagtataacacacactgacagccacgaagaaaaagctccctcat |
22082826 |
T |
|
| Q |
101 |
gtccgaacatataaacttaattcttggacatataaacttaagtcttcttaattcaaatacgatctaaaaacacatcaactaccaacactatatagcaatt |
200 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
22082825 |
gtccgaacatataagcttaagtcttggacatataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactatatagcaatt |
22082726 |
T |
|
| Q |
201 |
tgaaaatgagatagataacaccatctgtcaagacacattctcaacataaaatatcatgctaaataactttttgagttataggttgctttaagttccaaat |
300 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||| |
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|
| T |
22082725 |
tgaaaatgagatacataacaccatctaccaagacacattctcaacataaaatatcatgctaaatagctttttgagttataggttgttttaagatccaaat |
22082626 |
T |
|
| Q |
301 |
g |
301 |
Q |
| |
|
| |
|
|
| T |
22082625 |
g |
22082625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 19768232 - 19767949
Alignment:
| Q |
1 |
cctgaatttgaagtagcagcggaggnnnnnnncttacatgaacaaaacacataatgcagcataacagacactgacaaccacgaagaaaaagcttcctcat |
100 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| ||||||||||||||||||| |||||| ||||||||| |||||||||||||||| |||||| |
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|
| T |
19768232 |
cctgaatttgaagtagcagcagaggaaaaaaacttacataaacaaaacacataatgcagtataacacacactgacagccacgaagaaaaagctccctcat |
19768133 |
T |
|
| Q |
101 |
gtccgaacatataaacttaattcttggacatataaacttaagtcttcttaattcaaatacgatctaaaaacacatcaactaccaacactatatagcaatt |
200 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19768132 |
gtccgaacatataagcttaagtcttggacatataagcttaagtgttcttaattcaaatacgatctaaaaacacatcaactaccaacactatatagcaatt |
19768033 |
T |
|
| Q |
201 |
tgaaaatgagatagataacaccatctgtcaagacacattctcaacataaaatatcatgctaaataactttttgagttataggttg |
285 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |
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|
| T |
19768032 |
tgaaaatgagatacataacaccatctaccaagacacattctgaacataaaatatcatgctaaat-agtttttgagttataggttg |
19767949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 128 - 301
Target Start/End: Original strand, 45456360 - 45456533
Alignment:
| Q |
128 |
acatataaacttaagtcttcttaattcaaatacgatctaaaaacacatcaactaccaacactatatagcaatttgaaaatgagatagataacaccatctg |
227 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45456360 |
acatataaacttaagtattcttaattcaaatacgatctaaaaacacattaactaccaacactatatagcaatttgaaaatgagatacataacaccatctg |
45456459 |
T |
|
| Q |
228 |
tcaagacacattctcaacataaaatatcatgctaaataactttttgagttataggttgctttaagttccaaatg |
301 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| |
|
|
| T |
45456460 |
caaagatacattctcaacataaaatatcatgctaaataaccttttgggttataggttgctttaagatccaaatg |
45456533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 29199718 - 29199652
Alignment:
| Q |
33 |
cttacatgaacaaaacacataatgcagcataacagacactgacaaccacgaagaaaaagcttcctca |
99 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| |||| |||||||||||||||| ||||| |
|
|
| T |
29199718 |
cttacataaacaaaacacataatgcagcataacacacaccgacagccacgaagaaaaagctccctca |
29199652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 12572381 - 12572455
Alignment:
| Q |
1 |
cctgaatttgaagtagcagcggaggnnnnnnncttacatgaacaaaacacataatgcagcataacagacactgac |
75 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| ||||||||||| ||||| || ||||| |||||||| |
|
|
| T |
12572381 |
cctgaatttgaagtagcagcgcaggcaaaaaacttacataaacaaaacacacaatgccgcgtaacacacactgac |
12572455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 13548845 - 13548919
Alignment:
| Q |
1 |
cctgaatttgaagtagcagcggaggnnnnnnncttacatgaacaaaacacataatgcagcataacagacactgac |
75 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| ||||||||||| ||||| || ||||| |||||||| |
|
|
| T |
13548845 |
cctgaatttgaagtagcagcgcaggcaaaaaacttacataaacaaaacacacaatgccgcgtaacacacactgac |
13548919 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 128 - 301
Target Start/End: Complemental strand, 40164908 - 40164735
Alignment:
| Q |
128 |
acatataaacttaagtcttcttaattcaaatacgatctaaaaacacatcaactaccaacactatatagcaatttgaaaatgagatagataacaccatctg |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40164908 |
acatataaacttaagtcttcttaattcaaatacgatctaaaaacacatcaactaccaacgctatatagcaatttgaaaatgagatacataacaccatctt |
40164809 |
T |
|
| Q |
228 |
tcaagacacattctcaacataaaatatcatgctaaataactttttgagttataggttgctttaagttccaaatg |
301 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40164808 |
ccaagacacattatcaacataaaatatcatgctaaataactttttgagttataggttgctttaagatccaaatg |
40164735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 128 - 301
Target Start/End: Complemental strand, 6921749 - 6921575
Alignment:
| Q |
128 |
acatataaacttaagtcttcttaattcaaatacgatctaaaaacacatcaactaccaacactatatagcaatttgaaaatgagatagataacaccatctg |
227 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6921749 |
acatataaacttaagtattcttaattcaaatacgatctaaaaacacattaactaccaacactatatagcaatttgaaaatgagatacataacaccatctg |
6921650 |
T |
|
| Q |
228 |
tcaagacacattctcaacataaaatatcatgctaaat-aactttttgagttataggttgctttaagttccaaatg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| |||||||| |
|
|
| T |
6921649 |
caaagacacattctcaacataaaatatcatgctaaataaaccttttgggttataggttgctttaagatccaaatg |
6921575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 128 - 301
Target Start/End: Original strand, 38238129 - 38238303
Alignment:
| Q |
128 |
acatataaacttaagtcttcttaattcaaatacgatctaaaaacacatcaactaccaacactatatagcaatttgaaaatgagatagataacaccatctg |
227 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38238129 |
acatataaacttaagtattcttaattcaaatacgatctaaaaacacattaactaccaacactatatagcaatttgaaaatgagatacataacaccatctg |
38238228 |
T |
|
| Q |
228 |
tcaagacacattctcaacataaaatatcatgctaaat-aactttttgagttataggttgctttaagttccaaatg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| |||||||| |
|
|
| T |
38238229 |
caaagacacattctcaacataaaatatcatgctaaataaaccttttgggttataggttgctttaagatccaaatg |
38238303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 128 - 278
Target Start/End: Original strand, 7827613 - 7827763
Alignment:
| Q |
128 |
acatataaacttaagtcttcttaattcaaatacgatctaaaaacacatcaactaccaacactatatagcaatttgaaaatgagatagataacaccatctg |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
7827613 |
acatataaacttaagtcttcttaattcaaatacaatctaaaaacatatcaactaccaacactatatagcaatttgaaaatgagatacataacaacatctg |
7827712 |
T |
|
| Q |
228 |
tcaagacacattctcaacataaaatatcatgctaaataactttttgagtta |
278 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||||||||||||||||||| |
|
|
| T |
7827713 |
ccaagacacattctcagcataaaagataatgctaaataactttttgagtta |
7827763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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