View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4543_low_15 (Length: 312)
Name: NF4543_low_15
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543_low_15 |
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| [»] chr4 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 31201952 - 31202245
Alignment:
| Q |
19 |
actatggtatcctgtgatgttctgcaggagttcttcggatttcccacaattggagaggatcttgagcacctgaactcctctcatcctgttaacatgaacc |
118 |
Q |
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| T |
31201952 |
actatggtatcctgtgatgttctgcaggagttcttctgatttcccacaattggagaggatcttgagcacctgaactcctctcatcctgttaacatgaacc |
31202051 |
T |
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| Q |
119 |
aaaattaaattaaatttttcttttgtatattccctgccatatcctaaaaatgttgttattaaatcaagaatgtgatagacttacattggccctagaagaa |
218 |
Q |
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| T |
31202052 |
aaaattaaattaaatttttcttttgtatattccctgccatatcctaaaaatgttgttattaaatcaagaatgtgatagacttacattggccctagaagaa |
31202151 |
T |
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| Q |
219 |
tgatgagatctgtaaaacacaggtacttcattgaattcatgaggattattggaagtgtgatgaggagcaccataggctctagaatctgttctcc |
312 |
Q |
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| T |
31202152 |
tgatgagatctgtaaaacacaggtacttcattgaattcatgaggattattggaagtgtgatgaggagcaccataggctctagaatctgttctcc |
31202245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 124 - 312
Target Start/End: Original strand, 31215338 - 31215527
Alignment:
| Q |
124 |
taaattaaatttttcttttgtatattccc-tgccatatcctaaaaatg-ttgttattaaatcaagaatgtgatagacttacattggccctagaagaatga |
221 |
Q |
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| T |
31215338 |
taaattcaatttttcttttgtatattcccctgccgtatcctaaaaaaaattgttattaaatcaagaatgtgatagacttacattggctctagaagagtga |
31215437 |
T |
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| Q |
222 |
tgagatctgtaaaacacaggtacttcattgaattcatgaggattattggaagtgtgatgaggagcaccataggctctagaatctgttctcc |
312 |
Q |
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| T |
31215438 |
t-agatctgaaaaacacaggaacttcattgaattcatgaggattattggaagtgtgaggaggagcatcataggctctagaatctgttctcc |
31215527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 31215178 - 31215240
Alignment:
| Q |
19 |
actatggtatcctgtgatgttctgcaggagttcttcggatttcccacaattggagaggatctt |
81 |
Q |
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| T |
31215178 |
actatggtatcctgtgatgttctgtaggagttcttctgacttcccacaagtggagtggatctt |
31215240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 160 - 312
Target Start/End: Original strand, 13605865 - 13606017
Alignment:
| Q |
160 |
tcctaaaaatgttgttattaaatcaagaatgtgatagacttacattggccctagaagaatgatgagatctgtaaaacacaggtacttcattgaattcatg |
259 |
Q |
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| T |
13605865 |
tcctaaaaatattgttattaaatcaagaatgtgattgacttacattagccctagtggagtgatgagatccgtaaaacacaggtacttaattgaattcatg |
13605964 |
T |
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| Q |
260 |
aggattattggaagtgtgatgaggagcaccataggctctagaatctgttctcc |
312 |
Q |
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| T |
13605965 |
aggattattgtaagtttgataaggagcatcataggctctagaatctgttctcc |
13606017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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