View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4543_low_16 (Length: 309)
Name: NF4543_low_16
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 36636562 - 36636276
Alignment:
| Q |
18 |
aatattttgctgtttgaattccatattcatatcacatacgctaactattgaaggtgaaaaaccatacattnnnnnnngatgtcccaac----atatcaaa |
113 |
Q |
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| T |
36636562 |
aatattttgttgtttgaattccatattcatatcacatatgctaactattgagggtgaaaaactgtacattaaaaaaagatgtcccaacatatatatcaaa |
36636463 |
T |
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| Q |
114 |
tgttccggtcgtctaaattatactta-agaactatgtgttgttaccttactaacatgttctatcctaagctttaatatcaatagaatgtaagaatttcaa |
212 |
Q |
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|||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36636462 |
tgtttcggtcgtctaaattatagttagggaactatgtgttgttaccttactaacatgttctatcctaagctttaatatcaatagaatgtaagaatttcaa |
36636363 |
T |
|
| Q |
213 |
tatcaagtgggatagtatatacttacttgagaacaaattgtgttccacacttcctctggccatgtactcatatattagcaccctatg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36636362 |
tatcaagtgggatagtatatacttacttgagaacaaattgtgttccacacttcctctggccatgtactcatatattagcaccctatg |
36636276 |
T |
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