View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4543_low_20 (Length: 271)
Name: NF4543_low_20
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543_low_20 |
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| [»] scaffold0879 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 27 - 253
Target Start/End: Original strand, 24406831 - 24407065
Alignment:
| Q |
27 |
ttgtgaaaacgtgttagagctgaggttgttctgtttttatcctttggcttttagagagaactggcaagcatgattgagaacatcaagtgtgaaacaattg |
126 |
Q |
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| T |
24406831 |
ttgtgaaaacgtgttagagctgaggttgttctgtttttatcctttggcttttagagagaactggcaagcatgattgagaacatcaagtgtgaaacaattg |
24406930 |
T |
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| Q |
127 |
ataaagtcaaattaattcaaaacttgccacaactatat-atat---aat--aaatgaaat--attataattaaaaagtattgtataccaacttcatgtac |
218 |
Q |
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| T |
24406931 |
ataaagtcaaattaattcaaaacttgccacaactatataatattccaattccaatggaatgaaatataattaaaaagtattgtatacaaacttcatgtac |
24407030 |
T |
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| Q |
219 |
attttgcttatgcgatgtgatatatatgagaaaca |
253 |
Q |
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| T |
24407031 |
attttgcttatgcgatgtgatatatatgagaaaca |
24407065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 24469616 - 24469535
Alignment:
| Q |
64 |
tatcctttggcttttagagagaac---tggcaagcatgattgagaacatcaagtgtgaaacaattgataaagtcaaattaatt |
143 |
Q |
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| T |
24469616 |
tatcctttggcttttagagagaagaattggcaagcatgattgagaac-tcaagtgtgaaacatttgataaagtcaaattaatt |
24469535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 24422178 - 24422249
Alignment:
| Q |
83 |
agaactggcaagcatgattgagaacatcaagtgtgaaacaattgataaagtcaaattaattcaaaacttgcca |
155 |
Q |
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| T |
24422178 |
agaattggcaagcatgattgagagcc-caagtgtgaaacatatgataaagtcaaattaattccaaatttgcca |
24422249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0879 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0879
Description:
Target: scaffold0879; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 3876 - 3795
Alignment:
| Q |
64 |
tatcctttggcttttagagagaac---tggcaagcatgattgagaacatcaagtgtgaaacaattgataaagtcaaattaatt |
143 |
Q |
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| T |
3876 |
tatcctttggcttttagagagaagaattggcaagcatgattgagaac-tcaagtgtgaaacatttgataaagtcaaattaatt |
3795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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