View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4543_low_24 (Length: 241)

Name: NF4543_low_24
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4543_low_24
NF4543_low_24
[»] chr5 (11 HSPs)
chr5 (1-227)||(21081059-21081285)
chr5 (1-137)||(15325833-15325969)
chr5 (1-137)||(18712800-18712936)
chr5 (1-141)||(5605370-5605510)
chr5 (1-141)||(22452891-22453031)
chr5 (1-119)||(723562-723680)
chr5 (19-137)||(21922917-21923035)
chr5 (28-116)||(24417435-24417523)
chr5 (28-116)||(30449685-30449773)
chr5 (31-99)||(24295672-24295741)
chr5 (159-216)||(18713154-18713211)
[»] chr8 (8 HSPs)
chr8 (1-222)||(23745543-23745764)
chr8 (1-141)||(33596946-33597086)
chr8 (5-122)||(12920407-12920524)
chr8 (1-141)||(45494267-45494407)
chr8 (28-99)||(25046471-25046542)
chr8 (31-99)||(18237546-18237614)
chr8 (31-99)||(18246997-18247065)
chr8 (28-87)||(20749226-20749285)
[»] chr3 (8 HSPs)
chr3 (4-143)||(2160060-2160199)
chr3 (4-143)||(40088698-40088837)
chr3 (1-119)||(19689601-19689719)
chr3 (1-141)||(48983472-48983612)
chr3 (28-116)||(28356642-28356730)
chr3 (39-141)||(7618308-7618409)
chr3 (145-227)||(40088418-40088500)
chr3 (145-216)||(2160397-2160468)
[»] scaffold0163 (2 HSPs)
scaffold0163 (4-143)||(20710-20849)
scaffold0163 (145-227)||(21047-21129)
[»] chr4 (7 HSPs)
chr4 (44-143)||(14532122-14532221)
chr4 (28-141)||(14912228-14912341)
chr4 (1-134)||(14937105-14937238)
chr4 (1-119)||(116953-117071)
chr4 (28-116)||(54694869-54694957)
chr4 (28-116)||(26817109-26817197)
chr4 (145-227)||(14532419-14532501)
[»] chr1 (5 HSPs)
chr1 (1-122)||(14277126-14277247)
chr1 (1-119)||(24822120-24822238)
chr1 (1-118)||(21756012-21756129)
chr1 (145-227)||(20178980-20179062)
chr1 (28-87)||(18960039-18960098)
[»] chr7 (4 HSPs)
chr7 (1-141)||(13871022-13871162)
chr7 (1-137)||(14639833-14639969)
chr7 (1-119)||(611536-611654)
chr7 (28-116)||(15180337-15180425)
[»] chr2 (1 HSPs)
chr2 (1-141)||(1795754-1795894)
[»] chr6 (3 HSPs)
chr6 (1-119)||(8999650-8999768)
chr6 (1-119)||(9008818-9008933)
chr6 (19-133)||(27746054-27746168)
[»] scaffold0010 (2 HSPs)
scaffold0010 (31-99)||(263991-264059)
scaffold0010 (31-99)||(261688-261756)
[»] scaffold0028 (2 HSPs)
scaffold0028 (28-116)||(99383-99471)
scaffold0028 (1-119)||(86544-86659)
[»] scaffold0049 (1 HSPs)
scaffold0049 (19-137)||(19772-19890)
[»] scaffold0482 (1 HSPs)
scaffold0482 (28-116)||(7548-7637)
[»] scaffold0014 (1 HSPs)
scaffold0014 (172-208)||(157822-157858)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 21081285 - 21081059
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21081285 ttacaaattaaacaacaagaagacggcatttttatttttcaagaaaaatacaccagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 21081186  T
Q  101 ctacttccatgcatccttcctcgagcttagacaaagatgaacatgaaaggacaagaattttaatcttacaacatattatgatgctgattttgctggagac 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||||||||||||  ||||||    
T  21081185 ctacttccatgcatccttcctcgagcttagacaaagatgatcatgaaaggacaagaattttgatcttacagcatattgtgatgctgattttgtcggagac 21081086  T
Q  201 aaaattgaaagaaaaatcacaaacgga 227  Q
    |||||||||||||||| ||||| ||||    
T  21081085 aaaattgaaagaaaaagcacaagcgga 21081059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 15325969 - 15325833
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    |||||||| ||||||||  |||| || ||||||||||| |||||||||||||||| ||| ||||||| ||||||| | ||||||||| | ||||| ||||    
T  15325969 ttacaaatcaaacaacataaagatggtatttttatttgccaagaaaaatacatcaaagaccttctcaaaaaataccacatgaatgaagccaaaatcatgt 15325870  T
Q  101 ctacttccatgcatccttcctcgagcttagacaaaga 137  Q
    ||||| | |||||||| || || || |||||||||||    
T  15325869 ctactcctatgcatccatcatccagtttagacaaaga 15325833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 18712800 - 18712936
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    |||||||| ||||||||  |||| || ||||||||||| |||||||||||||||| ||| ||||||| ||||||| | ||||||||| | ||||| ||||    
T  18712800 ttacaaatcaaacaacataaagatggtatttttatttgccaagaaaaatacatcaaagaccttctcaaaaaataccacatgaatgaagccaaaatcatgt 18712899  T
Q  101 ctacttccatgcatccttcctcgagcttagacaaaga 137  Q
    ||||| | |||||||| || || || |||||||||||    
T  18712900 ctactcctatgcatccatcatccagtttagacaaaga 18712936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 5605370 - 5605510
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    ||||||||||||||| ||  | | ||||| |||||||||||||||||||| || | ||||||||||| |||||| |||||||||||| | ||||| |||     
T  5605370 ttacaaattaaacaagaatcaaatggaatatttatttgtcaagaaaaatatattaaagatcttctcaaaaaatataaaatgaatgaagctaaaataatgg 5605469  T
Q  101 ctacttccatgcatccttcctcgagcttagacaaagatgaa 141  Q
      ||| |||||||||| || || || |||||||||||||||    
T  5605470 taactcccatgcatccatcttcaagtttagacaaagatgaa 5605510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 22453031 - 22452891
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    ||||||||||||||| ||  | | ||||||||||||||||||||||||||  | ||||||||||||| |||||| ||||||||| || ||||||| |||     
T  22453031 ttacaaattaaacaagaaacaaatggaatttttatttgtcaagaaaaatatgttagagatcttctcaaaaaatataaaatgaatcaagcaaaaataatgg 22452932  T
Q  101 ctacttccatgcatccttcctcgagcttagacaaagatgaa 141  Q
    | ||| |||||||||| ||  | || ||||| |||||||||    
T  22452931 caactcccatgcatccatctacaagtttagataaagatgaa 22452891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 723680 - 723562
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    |||||| | ||||||||  |||| || ||||| ||||||||||||||||| |||| ||||||||| | |||||| |||||||||||| | |||||||||     
T  723680 ttacaagtcaaacaacacaaagatggtattttcatttgtcaagaaaaatatatcaaagatcttcttaaaaaatataaaatgaatgaagccaaaattatga 723581  T
Q  101 ctacttccatgcatccttc 119  Q
    ||||| | ||||| |||||    
T  723580 ctactcctatgcacccttc 723562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 21922917 - 21923035
Alignment:
Q  19 gaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgtctacttccatgcatcctt 118  Q
    ||||| || |||||||| ||||||||||||||||||| ||||||| | |  |||||||| ||||||||  ||||||| ||||| ||| | ||||||||||    
T  21922917 gaagatggcatttttatatgtcaagaaaaatacatcaaagatcttttaaagaaatacaagatgaatgaggcaaaaatgatgtcaactccaatgcatcctt 21923016  T
Q  119 cctcgagcttagacaaaga 137  Q
    | || || |||||||||||    
T  21923017 catcaagtttagacaaaga 21923035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 24417435 - 24417523
Alignment:
Q  28 atttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgtctacttccatgcatcc 116  Q
    ||||||||||||||||||||||| || | ||||||||||| |||||| |||||||||||| | ||||| ||| | ||| ||||||||||    
T  24417435 atttttatttgtcaagaaaaatatataaaagatcttctcaaaaaatataaaatgaatgaagccaaaataatggcaactcccatgcatcc 24417523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 30449773 - 30449685
Alignment:
Q  28 atttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgtctacttccatgcatcc 116  Q
    ||||||||||||||||||||||| || ||||||||||| | |||||| |||||||||||| | ||||| ||| | ||| ||||||||||    
T  30449773 atttttatttgtcaagaaaaatatataagagatcttcttaaaaaatataaaatgaatgaagccaaaataatggcaactcccatgcatcc 30449685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 24295741 - 24295672
Alignment:
Q  31 tttatttgtcaagaaaaatacatcagagatcttctcacaaaat-acaaaatgaatgaatcaaaaattatg 99  Q
    |||||||||||||||||||| || | ||||||||||| ||||| | |||||||||||  |||||||||||    
T  24295741 tttatttgtcaagaaaaatatattaaagatcttctcaaaaaataataaaatgaatgaggcaaaaattatg 24295672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 18713154 - 18713211
Alignment:
Q  159 tttaatcttacaacatattatgatgctgattttgctggagacaaaattgaaagaaaaa 216  Q
    ||||||||||   |||||| ||||||||| | ||||||||||||||| ||||||||||    
T  18713154 tttaatcttatggcatattgtgatgctgactatgctggagacaaaatagaaagaaaaa 18713211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23745764 - 23745543
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    |||||||||||||||  ||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23745764 ttacaaattaaacaaagagaagacggcattttcatttttcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaagcaaaaattatgt 23745665  T
Q  101 ctacttccatgcatccttcctcgagcttagacaaagatgaacatgaaaggacaagaattttaatcttacaacatattatgatgctgattttgctggagac 200  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||| |||||| ||||| ||||||||| ||||||    
T  23745664 ctacttccatgcatccttcctcaagcttagacaaagatgaacaggaaaggacaataattttaatcttacagcatattgtgatgttgattttgccggagac 23745565  T
Q  201 aaaattgaaagaaaaatcacaa 222  Q
    |||||||||||||||| |||||    
T  23745564 aaaattgaaagaaaaagcacaa 23745543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 33597086 - 33596946
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    ||||||||||||||| ||  | | ||||||||||||||||||||||||||  | ||||||||||||| |||||| |||||||||||| | ||||| |||     
T  33597086 ttacaaattaaacaagaaacaaatggaatttttatttgtcaagaaaaatatgttagagatcttctcaaaaaatataaaatgaatgaagccaaaataatgg 33596987  T
Q  101 ctacttccatgcatccttcctcgagcttagacaaagatgaa 141  Q
    | ||| |||||||||| ||  | |||||||| |||||||||    
T  33596986 caactcccatgcatccatctacaagcttagataaagatgaa 33596946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 12920407 - 12920524
Alignment:
Q  5 aaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgtctac 104  Q
    ||||||||||| ||  | | ||||| |||||||||||||||||||| || | ||||||||||| |||||| |||||||||||| | ||||||||| ||||    
T  12920407 aaattaaacaagaaacaaatggaatatttatttgtcaagaaaaatatattaaagatcttctcaaaaaatataaaatgaatgaagccaaaattatggctac 12920506  T
Q  105 ttccatgcatccttcctc 122  Q
    | |||||||||| |||||    
T  12920507 tcccatgcatccatcctc 12920524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 45494407 - 45494267
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    |||||||| |||||||   |||| || ||||||||||| |||||||||||||||| ||| ||||||| ||||||| | ||||||||| | ||||| ||||    
T  45494407 ttacaaatcaaacaacttaaagatggtatttttatttgccaagaaaaatacatcaaagaccttctcaaaaaataccacatgaatgaagccaaaatcatgt 45494308  T
Q  101 ctacttccatgcatccttcctcgagcttagacaaagatgaa 141  Q
    ||||| | |||||||| || ||  | |||||||||||||||    
T  45494307 ctactcctatgcatccatcatcctgtttagacaaagatgaa 45494267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 25046542 - 25046471
Alignment:
Q  28 atttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatg 99  Q
    ||||||||||||||||||||||| || | | ||||||||| |||||| |||||||||||| |||||||||||    
T  25046542 atttttatttgtcaagaaaaatatattaaaaatcttctcaaaaaatataaaatgaatgaagcaaaaattatg 25046471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 18237546 - 18237614
Alignment:
Q  31 tttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatg 99  Q
    |||||||||||||||||||| || | ||||||||||| |||||| |||||||||||  |||||||||||    
T  18237546 tttatttgtcaagaaaaatatattaaagatcttctcaaaaaatataaaatgaatgaggcaaaaattatg 18237614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 18246997 - 18247065
Alignment:
Q  31 tttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatg 99  Q
    |||||||||||||||||||| || | ||||||||||| |||||| |||||||||||  |||||||||||    
T  18246997 tttatttgtcaagaaaaatatattaaagatcttctcaaaaaatataaaatgaatgaggcaaaaattatg 18247065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 20749226 - 20749285
Alignment:
Q  28 atttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaa 87  Q
    ||||||||||||||||||||||| || | ||||||||||| |||||| ||||||||||||    
T  20749226 atttttatttgtcaagaaaaatatataaaagatcttctcaaaaaatataaaatgaatgaa 20749285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 2160060 - 2160199
Alignment:
Q  4 caaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgtcta 103  Q
    ||||| ||||||||||||||||| |||||||| | |||||||||||| || ||||||||||||| |||||| |||||||||||| |||||||||||||||    
T  2160060 caaatcaaacaacaagaagacggcatttttatctttcaagaaaaatatattagagatcttctcaaaaaatataaaatgaatgaagcaaaaattatgtcta 2160159  T
Q  104 cttccatgcatccttcctcgagcttagacaaagatgaaca 143  Q
    || |||||||||||||||| |||||||||||||| |||||    
T  2160160 ctcccatgcatccttcctcaagcttagacaaagacgaaca 2160199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 40088837 - 40088698
Alignment:
Q  4 caaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgtcta 103  Q
    ||||| ||||||||||||||||| |||||||| | |||||||||||| || ||||||||||||| |||||| |||||||||||| ||||||| |||||||    
T  40088837 caaatcaaacaacaagaagacggcatttttatctttcaagaaaaatatattagagatcttctcaaaaaatataaaatgaatgaagcaaaaatgatgtcta 40088738  T
Q  104 cttccatgcatccttcctcgagcttagacaaagatgaaca 143  Q
    || |||||||||||||||| |||||||||||||| |||||    
T  40088737 ctcccatgcatccttcctcaagcttagacaaagacgaaca 40088698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 19689601 - 19689719
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    |||||| | |||||||| ||||| || ||||| ||||||||||||||||| |||| ||||||||| | |||||| |||||||||||| | |||||||||     
T  19689601 ttacaagtcaaacaacacgaagatggtattttcatttgtcaagaaaaatatatcaaagatcttcttaaaaaatataaaatgaatgaagccaaaattatga 19689700  T
Q  101 ctacttccatgcatccttc 119  Q
    ||||| | |||||||||||    
T  19689701 ctactcctatgcatccttc 19689719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 48983472 - 48983612
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    ||||||||||||||| ||  | | ||||| |||||||||||||||||||| || | ||||||||||| |||||| |||||||||||| | ||||| |||     
T  48983472 ttacaaattaaacaagaatcaaatggaatatttatttgtcaagaaaaatatattaaagatcttctcaaaaaatataaaatgaatgaagctaaaataatgg 48983571  T
Q  101 ctacttccatgcatccttcctcgagcttagacaaagatgaa 141  Q
      ||| |||||||||| || || || |||||||||||||||    
T  48983572 taactcccatgcatccatcttcaagtttagacaaagatgaa 48983612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 28356730 - 28356642
Alignment:
Q  28 atttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgtctacttccatgcatcc 116  Q
    ||||||||||||||||||||||| || | ||||||||||| |||||| |||||||||||| | ||||| ||| | ||| ||||||||||    
T  28356730 atttttatttgtcaagaaaaatatataaaagatcttctcaaaaaatataaaatgaatgaagccaaaataatggcaactcccatgcatcc 28356642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 141
Target Start/End: Complemental strand, 7618409 - 7618308
Alignment:
Q  39 tcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgtctacttccatgcatccttcctcgagcttagacaaagat 138  Q
    |||||||| |||||||| ||||||||||| ||||||||||||||  ||| ||||||| |||||||||  ||||||||| || || |  ||||||||||||    
T  7618409 tcaagaaatatacatcaaagatcttctca-aaaatacaaaatgatcgaagcaaaaatcatgtctactcgcatgcatccatcttcaaatttagacaaagat 7618311  T
Q  139 gaa 141  Q
    |||    
T  7618310 gaa 7618308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 40088500 - 40088418
Alignment:
Q  145 gaaaggacaagaattttaatcttacaacatattatgatgctgattttgctggagacaaaattgaaagaaaaatcacaaacgga 227  Q
    |||||||||| || |||||||||||| |||||| ||| ||||| | ||| ||||| |||||||||||||||| ||||| ||||    
T  40088500 gaaaggacaaaaaatttaatcttacagcatattgtgacgctgactatgccggagataaaattgaaagaaaaagcacaagcgga 40088418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 2160397 - 2160468
Alignment:
Q  145 gaaaggacaagaattttaatcttacaacatattatgatgctgattttgctggagacaaaattgaaagaaaaa 216  Q
    |||||||||| || |||||||||||| |||||| ||| ||||| | ||| ||||| ||||||||||||||||    
T  2160397 gaaaggacaaaaaatttaatcttacagcatattgtgacgctgactatgccggagataaaattgaaagaaaaa 2160468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 20710 - 20849
Alignment:
Q  4 caaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgtcta 103  Q
    ||||| ||||||||||||||||| |||||||||| |||| ||||||| || ||||||||||||| ||| || |||||||||||| |||||||||||||||    
T  20710 caaatcaaacaacaagaagacggcatttttatttttcaaaaaaaatatattagagatcttctcaaaaattataaaatgaatgaagcaaaaattatgtcta 20809  T
Q  104 cttccatgcatccttcctcgagcttagacaaagatgaaca 143  Q
    ||  ||||||||||||||| |||||||||||||| |||||    
T  20810 ctcgcatgcatccttcctcaagcttagacaaagacgaaca 20849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 21047 - 21129
Alignment:
Q  145 gaaaggacaagaattttaatcttacaacatattatgatgctgattttgctggagacaaaattgaaagaaaaatcacaaacgga 227  Q
    |||||||||| || ||||||||||||||||||| ||| ||||| | ||| ||||| |||||||||||||||| ||||| ||||    
T  21047 gaaaggacaaaaaatttaatcttacaacatattgtgacgctgactatgccggagataaaattgaaagaaaaagcacaagcgga 21129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 14532122 - 14532221
Alignment:
Q  44 aaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgtctacttccatgcatccttcctcgagcttagacaaagatgaaca 143  Q
    |||| ||||| ||||||||||||| |||||| |||||||||||| |||||||||||||||||  ||||||||||||||| | ||||||||||||||||||    
T  14532122 aaaattacattagagatcttctcaaaaaatataaaatgaatgaagcaaaaattatgtctactcacatgcatccttcctcaaacttagacaaagatgaaca 14532221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 14912228 - 14912341
Alignment:
Q  28 atttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgtctacttccatgcatccttcctcgagct 127  Q
    ||||| ||||||||||||||||| |||| ||||||||| | |||||| |||||||||||| ||||||| ||| | ||| ||||||||||||| || |||     
T  14912228 attttcatttgtcaagaaaaatatatcaaagatcttcttaaaaaatataaaatgaatgaagcaaaaatcatgaccactcccatgcatccttcatcaagcc 14912327  T
Q  128 tagacaaagatgaa 141  Q
    | ||||||||||||    
T  14912328 ttgacaaagatgaa 14912341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 14937105 - 14937238
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    |||||||| |||||||   |||| || ||||||||||| |||||||||||||||| ||| ||||||| ||||||| | ||||||||| | ||||| ||||    
T  14937105 ttacaaatcaaacaacttaaagatggtatttttatttgccaagaaaaatacatcaaagaccttctcaaaaaataccacatgaatgaagccaaaatcatgt 14937204  T
Q  101 ctacttccatgcatccttcctcgagcttagacaa 134  Q
    ||||| | |||||||| || || || ||||||||    
T  14937205 ctactcctatgcatccatcatccagtttagacaa 14937238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 116953 - 117071
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    |||||| | ||||||||  |||| || ||||| ||||||||||||||||| |||| ||||||||| | |||||| |||||||||||| | |||||||||     
T  116953 ttacaagtcaaacaacacaaagatggtattttcatttgtcaagaaaaatatatcaaagatcttcttaaaaaatataaaatgaatgaagccaaaattatga 117052  T
Q  101 ctacttccatgcatccttc 119  Q
    ||||| | ||||| |||||    
T  117053 ctactcctatgcacccttc 117071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 54694957 - 54694869
Alignment:
Q  28 atttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgtctacttccatgcatcc 116  Q
    ||||||||||||||||||||||| || | ||||||||||| |||||| |||||||||||| | ||||| ||| | ||| ||||||||||    
T  54694957 atttttatttgtcaagaaaaatatataaaagatcttctcaaaaaatataaaatgaatgaagccaaaataatggcaactcccatgcatcc 54694869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 26817109 - 26817197
Alignment:
Q  28 atttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgtctacttccatgcatcc 116  Q
    |||||||| |||||||||||||| || | ||||||||||| |||||| |||||||||||| | ||||| ||| | ||| ||||||||||    
T  26817109 atttttatctgtcaagaaaaatatataaaagatcttctcaaaaaatataaaatgaatgaagccaaaataatggcaactcccatgcatcc 26817197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 14532419 - 14532501
Alignment:
Q  145 gaaaggacaagaattttaatcttacaacatattatgatgctgattttgctggagacaaaattgaaagaaaaatcacaaacgga 227  Q
    |||||||||| || |||||||||||| |||||| ||| ||||| | ||| ||||| |||||||||||||||| ||||| ||||    
T  14532419 gaaaggacaaaaaatttaatcttacagcatattgtgacgctgaatatgccggagaaaaaattgaaagaaaaagcacaagcgga 14532501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 14277247 - 14277126
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    ||||||||||||||| ||  | | ||||| |||||||||||||||||||| || | ||||||||||| |||||| |||||||||||| | |||||||||     
T  14277247 ttacaaattaaacaagaaacaaatggaatatttatttgtcaagaaaaatatattaaagatcttctcaaaaaatataaaatgaatgaagccaaaattatgg 14277148  T
Q  101 ctacttccatgcatccttcctc 122  Q
    ||||| |||||||||| |||||    
T  14277147 ctactcccatgcatccatcctc 14277126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 24822238 - 24822120
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    |||||| | ||||||||  |||| || ||||| ||||||||||||||||| |||| ||||||||| | |||||| |||||||||||| | |||||||||     
T  24822238 ttacaagtcaaacaacacaaagatggtattttcatttgtcaagaaaaatatatcaaagatcttcttaaaaaatataaaatgaatgaagccaaaattatga 24822139  T
Q  101 ctacttccatgcatccttc 119  Q
    ||||| | ||||| |||||    
T  24822138 ctactcctatgcacccttc 24822120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 21756012 - 21756129
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    |||||| | ||||| || ||||| || ||||| ||||||||||||||||| |||| ||||||||| | |||||| || ||||||||| | |||||||||     
T  21756012 ttacaagtcaaacagcacgaagatggtattttcatttgtcaagaaaaatatatcaaagatcttcttaaaaaatataagatgaatgaagccaaaattatga 21756111  T
Q  101 ctacttccatgcatcctt 118  Q
    |||||  |||||||||||    
T  21756112 ctactctcatgcatcctt 21756129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 20178980 - 20179062
Alignment:
Q  145 gaaaggacaagaattttaatcttacaacatattatgatgctgattttgctggagacaaaattgaaagaaaaatcacaaacgga 227  Q
    |||||||||| || |||||||||||| |||||| |||  |||| | ||| ||||| |||||||||||||||| ||||||||||    
T  20178980 gaaaggacaaaaaatttaatcttacagcatattgtgacactgactatgccggagataaaattgaaagaaaaagcacaaacgga 20179062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 18960039 - 18960098
Alignment:
Q  28 atttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaa 87  Q
    ||||| ||||||||||||||||| |||| ||||||||| | |||||| || |||||||||    
T  18960039 attttcatttgtcaagaaaaatatatcaaagatcttcttaaaaaatataagatgaatgaa 18960098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 13871022 - 13871162
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    ||||||||||||||| ||  | | ||||||||||||||||||||||||||  | ||||||||||||| |||||| |||||||||||| | ||||| |||     
T  13871022 ttacaaattaaacaagaaacaaatggaatttttatttgtcaagaaaaatatgttagagatcttctcaaaaaatataaaatgaatgaagccaaaataatgg 13871121  T
Q  101 ctacttccatgcatccttcctcgagcttagacaaagatgaa 141  Q
    | ||| |||||||||| ||  | || ||||| |||||||||    
T  13871122 caactcccatgcatccatctacaagtttagataaagatgaa 13871162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 14639969 - 14639833
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    ||||||||||||||| ||  | | ||||| |||||||||||||||||||| |  | |||||||||||  ||||| |||||||||||| | |||||||||     
T  14639969 ttacaaattaaacaagaaacaaatggaatatttatttgtcaagaaaaatatactaaagatcttctcaagaaatataaaatgaatgaagccaaaattatgg 14639870  T
Q  101 ctacttccatgcatccttcctcgagcttagacaaaga 137  Q
    ||||| |||||||||| ||||| ||  ||||||||||    
T  14639869 ctactcccatgcatccatcctctagtctagacaaaga 14639833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 611536 - 611654
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    |||||| | ||||||||  |||| || ||||| ||||||||||||||||| |||| ||||||||| | |||||| |||||||||||| | |||||||||     
T  611536 ttacaagtcaaacaacacaaagatggtattttcatttgtcaagaaaaatatatcaaagatcttcttaaaaaatataaaatgaatgaagccaaaattatga 611635  T
Q  101 ctacttccatgcatccttc 119  Q
    ||||| | ||||| |||||    
T  611636 ctactcctatgcacccttc 611654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 15180337 - 15180425
Alignment:
Q  28 atttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgtctacttccatgcatcc 116  Q
    ||||||||||||||||||||||| || | ||||||||||| |||||| |||||||||||| | ||||| ||| | ||| ||||||||||    
T  15180337 atttttatttgtcaagaaaaatatataaaagatcttctcaaaaaatataaaatgaatgaagccaaaataatggcaactcccatgcatcc 15180425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 1795754 - 1795894
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    ||||||||||||||| ||  | | ||||| |||||||||||||||||||| || | ||||||||||| |||||| |||||||||||| | ||||| |||     
T  1795754 ttacaaattaaacaagaatcaaatggaatatttatttgtcaagaaaaatatattaaagatcttctcaaaaaatataaaatgaatgaagctaaaataatgg 1795853  T
Q  101 ctacttccatgcatccttcctcgagcttagacaaagatgaa 141  Q
      ||| |||||||||| || || || |||||||||||||||    
T  1795854 taactcccatgcatccatcttcaagtttagacaaagatgaa 1795894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 8999650 - 8999768
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    |||||| | ||||||||  |||| || ||||| ||||||||||||||||| |||| ||||||||| | |||||| |||||||||||| | |||||||||     
T  8999650 ttacaagtcaaacaacacaaagatggtattttcatttgtcaagaaaaatatatcaaagatcttcttaaaaaatataaaatgaatgaagccaaaattatga 8999749  T
Q  101 ctacttccatgcatccttc 119  Q
    ||||| | ||||| |||||    
T  8999750 ctactcctatgcacccttc 8999768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 9008818 - 9008933
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    |||||| | |||||||| ||||| || ||||| ||||||||||||||||| |||| |||||||   | |||||| |||||||||||| | |||||||||     
T  9008818 ttacaagtcaaacaacacgaagatggtattttcatttgtcaagaaaaatatatcaaagatctt---aaaaaatataaaatgaatgaagccaaaattatga 9008914  T
Q  101 ctacttccatgcatccttc 119  Q
    ||||| | |||||||||||    
T  9008915 ctactcctatgcatccttc 9008933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 27746168 - 27746054
Alignment:
Q  19 gaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgtctacttccatgcatcctt 118  Q
    ||||| || |||||||||| |||||||||||| |||| ||||||| | |  |||||||| ||||||||  ||||||| ||| | ||| | ||||||||||    
T  27746168 gaagatggcatttttatttatcaagaaaaatatatcaaagatcttttaaagaaatacaagatgaatgaggcaaaaatgatgacaactccaatgcatcctt 27746069  T
Q  119 cctcgagcttagaca 133  Q
    |||| || |||||||    
T  27746068 cctcaagtttagaca 27746054  T

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Target: scaffold0010 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 263991 - 264059
Alignment:
Q  31 tttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatg 99  Q
    |||||||||||||||||||| || | ||||||||||| |||||| |||||||||||| |||||||||||    
T  263991 tttatttgtcaagaaaaatatattaaagatcttctcaaaaaatataaaatgaatgaagcaaaaattatg 264059  T

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Target: scaffold0010; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 261688 - 261756
Alignment:
Q  31 tttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatg 99  Q
    |||||||||||||||||||| || | ||||||||||| |||||| |||||||||||  |||||||||||    
T  261688 tttatttgtcaagaaaaatatattaaagatcttctcaaaaaatataaaatgaatgaggcaaaaattatg 261756  T

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Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 99471 - 99383
Alignment:
Q  28 atttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgtctacttccatgcatcc 116  Q
    |||||||| |||||||||||||| || | ||||||||||| |||||| |||||||||||| | ||||| ||| | ||| ||||||||||    
T  99471 atttttatctgtcaagaaaaatatataaaagatcttctcaaaaaatataaaatgaatgaagccaaaataatggcaactcccatgcatcc 99383  T

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Target: scaffold0028; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 86544 - 86659
Alignment:
Q  1 ttacaaattaaacaacaagaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgt 100  Q
    |||||| | ||||| || ||||| || ||||| ||||||||||||||||| |||| |||||||   | |||||| ||||||| |||| | |||||||||     
T  86544 ttacaagtcaaacagcacgaagatggtattttcatttgtcaagaaaaatatatcaaagatctt---aaaaaatataaaatgattgaagccaaaattatga 86640  T
Q  101 ctacttccatgcatccttc 119  Q
    ||||| | |||||||||||    
T  86641 ctactcctatgcatccttc 86659  T

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Target: scaffold0049 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 19772 - 19890
Alignment:
Q  19 gaagacggaatttttatttgtcaagaaaaatacatcagagatcttctcacaaaatacaaaatgaatgaatcaaaaattatgtctacttccatgcatcctt 118  Q
    ||||| || |||||||||| ||| |||||||| |||| ||||||| | |  |||||||| ||||||||  ||||||| ||||| ||| | ||||||||||    
T  19772 gaagatggcatttttatttatcaggaaaaatatatcaaagatcttttaaagaaatacaagatgaatgaggcaaaaatgatgtcaactccaatgcatcctt 19871  T
Q  119 cctcgagcttagacaaaga 137  Q
    | || || |||||||||||    
T  19872 catcaagtttagacaaaga 19890  T

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Target: scaffold0482 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 7548 - 7637
Alignment:
Q  28 atttttatttgtcaagaaaaatacatcagagatcttctc-acaaaatacaaaatgaatgaatcaaaaattatgtctacttccatgcatcc 116  Q
    ||||||||||||||||||||||| || | |||||||||| | |||||| |||||||||||| | ||||| ||| | ||| ||||||||||    
T  7548 atttttatttgtcaagaaaaatatataaaagatcttctcaaaaaaatataaaatgaatgaagccaaaataatggcaactcccatgcatcc 7637  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 157858 - 157822
Alignment:
Q  172 catattatgatgctgattttgctggagacaaaattga 208  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  157858 catattgtgatgctgattatgctggagacaaaattga 157822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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