View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4543_low_26 (Length: 239)
Name: NF4543_low_26
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543_low_26 |
 | |
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| [»] scaffold0458 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 44488536 - 44488759
Alignment:
| Q |
1 |
ttggtttggatcagtgcgtccttgagcggtgatgggattgaattgtccatgtaagggaagacgaggatatatattgcagttttgcaaaacaactgcggcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44488536 |
ttggtttggatcagtgcgtccttgagcggtgatgggattgaattgtccatgtaagggaagacgaggatatatattgcagttttgcaaaacaactgcggcg |
44488635 |
T |
|
| Q |
101 |
tttccaaatataaaatctattgttccataaatgtcgcattctttataaaattgccttagtgaatgtgtatagagagtgtcttggtacccttcaaagctgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
44488636 |
tttccaaatataaaatctattgttccataaatgtcgcattctttataaaattgccttagtgaatgtgcatagagagtgtcttggtacccttcaaagctgc |
44488735 |
T |
|
| Q |
201 |
aacgatagaaactggacatatctg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
44488736 |
aacgatagaaactggacatatctg |
44488759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 44463886 - 44463988
Alignment:
| Q |
101 |
tttccaaatataaaatctattgttccataaatgtcgcattctttataaaattgccttagtgaatgtgtatagagagtgtcttggtacccttcaaagctgc |
200 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||||||| |||||| | || ||||| |||||||||||||| || | ||||||||||||||||| || |||| |
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|
| T |
44463886 |
tttccgaatatgaaatctactgttccataaatgtcacattctctgtagaattgtcttagtgaatgtgtgtataacgtgtcttggtacccttcgaaactgc |
44463985 |
T |
|
| Q |
201 |
aac |
203 |
Q |
| |
|
||| |
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|
| T |
44463986 |
aac |
44463988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 201
Target Start/End: Original strand, 44474366 - 44474562
Alignment:
| Q |
5 |
tttggatcagtgcgtccttgagcggtgatgggattgaattgtcca-tgtaagggaagacgaggatatatattgcagttttgcaaaacaactgcggcgttt |
103 |
Q |
| |
|
|||||||| || || ||||||||||| || | |||||||||||| ||| |||||| || |||||||| ||||| ||| |||||||| || || ||| |
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|
| T |
44474366 |
tttggatccgttcggccttgagcggttatagcgttgaattgtccactgtt-gggaagtcggggatatatgttgcaagattgtaaaacaacagcagcattt |
44474464 |
T |
|
| Q |
104 |
ccaaatataaaatctattgttccataaatgtcgcattctttataaaattgccttagtgaatgtgtatagagagtgtcttggtacccttcaaagctgca |
201 |
Q |
| |
|
|||||||| || || | ||||||||| ||||| ||||| |||||||||||| | |||||||| || | ||| ||||| || ||||| |||||||| |
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|
| T |
44474465 |
ccaaatatgaagtcaactgttccatagatgtcacattcgcgataaaattgcctcatggaatgtgtgtacaaagtatcttgatagccttcgaagctgca |
44474562 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 12551 - 12770
Alignment:
| Q |
5 |
tttggatcagtgcgtccttgagcggtgatgggattgaattgtccatgtaagggaagacgaggatatatattgcagttttgcaaaacaactgcggcgtttc |
104 |
Q |
| |
|
||||||||||| || |||||||| ||||||| ||||||||||||| || ||||| |||||||| || || || ||||||||||||||||| | |||| |
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|
| T |
12551 |
tttggatcagttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttc |
12650 |
T |
|
| Q |
105 |
caaatataaaatctattgttccataaatgtcgcattctttataaaattgccttagtgaatgtgtatagagagtgtcttggtacccttcaaagctgcaacg |
204 |
Q |
| |
|
||||||| || || | |||||| || || ||||||||| |||||| |||||||| ||||||||||| | ||||| || |||||||||||||| |||| |
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|
| T |
12651 |
caaatatgaagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaact |
12750 |
T |
|
| Q |
205 |
atagaaactggacatatctg |
224 |
Q |
| |
|
|||||| |||||||||||| |
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|
| T |
12751 |
atagaaggtggacatatctg |
12770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 24061016 - 24061235
Alignment:
| Q |
5 |
tttggatcagtgcgtccttgagcggtgatgggattgaattgtccatgtaagggaagacgaggatatatattgcagttttgcaaaacaactgcggcgtttc |
104 |
Q |
| |
|
||||||||||| || |||||||| ||||||| ||||||||||||| || ||||| |||||||| || || || ||||||||||||||||| | |||| |
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|
| T |
24061016 |
tttggatcagttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttc |
24061115 |
T |
|
| Q |
105 |
caaatataaaatctattgttccataaatgtcgcattctttataaaattgccttagtgaatgtgtatagagagtgtcttggtacccttcaaagctgcaacg |
204 |
Q |
| |
|
||||||| || || | |||||| || || ||||||||| |||||| |||||||| ||||||||||| | ||||| || |||||||||||||| |||| |
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|
| T |
24061116 |
caaatatgaagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaact |
24061215 |
T |
|
| Q |
205 |
atagaaactggacatatctg |
224 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
24061216 |
atagaaggtggacatatctg |
24061235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 39451111 - 39450892
Alignment:
| Q |
5 |
tttggatcagtgcgtccttgagcggtgatgggattgaattgtccatgtaagggaagacgaggatatatattgcagttttgcaaaacaactgcggcgtttc |
104 |
Q |
| |
|
||||||||||| || |||||||| ||||||| ||||||||||||| || ||||| |||||||| || || || ||||||||||||||||| | |||| |
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|
| T |
39451111 |
tttggatcagttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttc |
39451012 |
T |
|
| Q |
105 |
caaatataaaatctattgttccataaatgtcgcattctttataaaattgccttagtgaatgtgtatagagagtgtcttggtacccttcaaagctgcaacg |
204 |
Q |
| |
|
||||||| || || | |||||| || || ||||||||| |||||| |||||||| ||||||||||| | ||||| || |||||||||||||| |||| |
|
|
| T |
39451011 |
caaatatgaagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaact |
39450912 |
T |
|
| Q |
205 |
atagaaactggacatatctg |
224 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
39450911 |
atagaaggtggacatatctg |
39450892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 39460498 - 39460279
Alignment:
| Q |
5 |
tttggatcagtgcgtccttgagcggtgatgggattgaattgtccatgtaagggaagacgaggatatatattgcagttttgcaaaacaactgcggcgtttc |
104 |
Q |
| |
|
||||||||||| || |||||||| ||||||| ||||||||||||| || ||||| |||||||| || || || ||||||||||||||||| | |||| |
|
|
| T |
39460498 |
tttggatcagttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttc |
39460399 |
T |
|
| Q |
105 |
caaatataaaatctattgttccataaatgtcgcattctttataaaattgccttagtgaatgtgtatagagagtgtcttggtacccttcaaagctgcaacg |
204 |
Q |
| |
|
||||||| || || | |||||| || || ||||||||| |||||| |||||||| ||||||||||| | ||||| || |||||||||||||| |||| |
|
|
| T |
39460398 |
caaatatgaagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaact |
39460299 |
T |
|
| Q |
205 |
atagaaactggacatatctg |
224 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
39460298 |
atagaaggtggacatatctg |
39460279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 39471983 - 39471764
Alignment:
| Q |
5 |
tttggatcagtgcgtccttgagcggtgatgggattgaattgtccatgtaagggaagacgaggatatatattgcagttttgcaaaacaactgcggcgtttc |
104 |
Q |
| |
|
||||||||||| || |||||||| ||||||| ||||||||||||| || ||||| |||||||| || || || ||||||||||||||||| | |||| |
|
|
| T |
39471983 |
tttggatcagttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttc |
39471884 |
T |
|
| Q |
105 |
caaatataaaatctattgttccataaatgtcgcattctttataaaattgccttagtgaatgtgtatagagagtgtcttggtacccttcaaagctgcaacg |
204 |
Q |
| |
|
||||||| || || | |||||| || || ||||||||| |||||| |||||||| ||||||||||| | ||||| || |||||||||||||| |||| |
|
|
| T |
39471883 |
caaatatgaagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaact |
39471784 |
T |
|
| Q |
205 |
atagaaactggacatatctg |
224 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
39471783 |
atagaaggtggacatatctg |
39471764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 37165364 - 37165458
Alignment:
| Q |
104 |
ccaaatataaaatctattgttccataaatgtcgcattctttataaaattgccttagtgaatgtgtatagagagtgtcttggtacccttcaaagct |
198 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||| | ||| || ||||| | || ||||||| || || ||||||||||| ||||||||||| |
|
|
| T |
37165364 |
ccaaatatgaaatctactgttccataaatgtcgcagtttttgtagaattgtcgaagggaatgtgcgtatagtgtgtcttggtaaccttcaaagct |
37165458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 745235 - 745296
Alignment:
| Q |
80 |
ttttgcaaaacaactgcggcgtttccaaatataaaatctattgttccataaatgtcgcattc |
141 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||||||||||| || |||||||||| |||||| |
|
|
| T |
745235 |
ttttgaaaaactactgcagcatttccaaatataaaatctaccgtgccataaatgttgcattc |
745296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 19476596 - 19476547
Alignment:
| Q |
92 |
actgcggcgtttccaaatataaaatctattgttccataaatgtcgcattc |
141 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
19476596 |
actgcggcgttaccaaatatgaaatctattgtcccgtaaatgtcgcattc |
19476547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 2578523 - 2578575
Alignment:
| Q |
101 |
tttccaaatataaaatctattgttccataaatgtcgcattctttataaaattg |
153 |
Q |
| |
|
|||||||| || ||||| | |||||||||||||| ||||||| |||||||||| |
|
|
| T |
2578523 |
tttccaaaaatgaaatcaactgttccataaatgttgcattctctataaaattg |
2578575 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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