View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4543_low_28 (Length: 237)
Name: NF4543_low_28
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543_low_28 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 24618033 - 24617812
Alignment:
| Q |
16 |
acatcaactcacataacctagtggtgtctatccaaacgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgaca |
115 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24618033 |
acatcaactcacataacctagtggcgtctatccaaacgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgaca |
24617934 |
T |
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| Q |
116 |
ataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctttttgtaatactaatacttgcggc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24617933 |
ataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctttttgtaatactaatacttgcggc |
24617834 |
T |
|
| Q |
216 |
tcgatttagaactttgttctcc |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
24617833 |
tcgatttagaactttgttctcc |
24617812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 24105876 - 24105908
Alignment:
| Q |
205 |
atacttgcggctcgatttagaactttgttctcc |
237 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
24105876 |
atacttgctgctcgatttagaactttgttctcc |
24105908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 24113288 - 24113320
Alignment:
| Q |
205 |
atacttgcggctcgatttagaactttgttctcc |
237 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
24113288 |
atacttgcggctcaatttagaactttgttctcc |
24113320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 1343611 - 1343438
Alignment:
| Q |
19 |
tcaactcacataacctagtggtgtctatccaaacgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaata |
118 |
Q |
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|||||||||||||||||| || |||||||| ||||||||| |||||||| |||||| |||| ||||||||| | |||| ||||||| |||||||||||| |
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| T |
1343611 |
tcaactcacataacctaggggcgtctatcctaacgaatttctcatcataagactttcgttctttgtttgagcgtcctttcacgtgatgaaatcgacaata |
1343512 |
T |
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| Q |
119 |
atcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctt |
192 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1343511 |
atcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctt |
1343438 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 1355976 - 1356149
Alignment:
| Q |
19 |
tcaactcacataacctagtggtgtctatccaaacgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaata |
118 |
Q |
| |
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|||||||||||||||||| || |||||||| ||||||||| |||||||| |||||| |||| ||||||||| | |||| ||||||| |||||||||||| |
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| T |
1355976 |
tcaactcacataacctaggggcgtctatcctaacgaatttctcatcataagactttcgttctttgtttgagcgtcctttcacgtgatgaaatcgacaata |
1356075 |
T |
|
| Q |
119 |
atcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctt |
192 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1356076 |
atcaagaattaaggttaagattgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcctt |
1356149 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 191
Target Start/End: Complemental strand, 1360691 - 1360543
Alignment:
| Q |
43 |
ctatccaaacgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgc |
142 |
Q |
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|||||| ||| |||| ||||||||| | ||| ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| | |||||||| |
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| T |
1360691 |
ctatcctaacaaattcctcatcatacaattttctttccttgtttgagtggccttgtatgtgatgaaatagacaataatcaagaattaagttcaacattgc |
1360592 |
T |
|
| Q |
143 |
aggagtgacttgttgaggaagacatattggagaagtcttggaagatcct |
191 |
Q |
| |
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| || | |||| || |||||||||||||| |||| |||||||||||||| |
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|
| T |
1360591 |
aagacttactttttcaggaagacatattgcagaactcttggaagatcct |
1360543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 190
Target Start/End: Complemental strand, 1350035 - 1349886
Alignment:
| Q |
41 |
gtctatccaaacgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacatt |
140 |
Q |
| |
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|||||||| ||| ||||| |||||||| | ||| ||||||||| ||||||||||||| ||||| |||| ||||||||||||||||| || | |||| | |
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| T |
1350035 |
gtctatcctaacaaatttcgcatcatacaattttctttccttgttggagtggccttgtatgtgatgaaattgacaataatcaagaattgagctcaacaat |
1349936 |
T |
|
| Q |
141 |
gcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcc |
190 |
Q |
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| |||| | ||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
1349935 |
gaaggacttacttgttgaggaagacatattggagaactcttgcaagatcc |
1349886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 11366812 - 11366705
Alignment:
| Q |
79 |
ccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagt |
178 |
Q |
| |
|
||||||||||| ||||| |||| |||| ||||||||| ||||||||||||||| | | |||||||||| ||||||||||||||||||||| || | || | |
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| T |
11366812 |
ccttgtttgagcggcctagtacttgatgaaatcgacagtaatcaagaattaagctcagcattgcaggactgacttgttgaggaagacatactgcacaatt |
11366713 |
T |
|
| Q |
179 |
cttggaag |
186 |
Q |
| |
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|||||||| |
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|
| T |
11366712 |
cttggaag |
11366705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 1353424 - 1353313
Alignment:
| Q |
23 |
ctcacataacctagtggtgtctatccaaacgaatttgtcatcatacgacttttgttccttg---tttgagtggccttgtacgtgatcaaatcgacaataa |
119 |
Q |
| |
|
|||||||| | ||||||||| ||||| ||| |||| ||| ||||||||||| |||| ||| ||||| |||||| |||||||| ||||||||||||| |
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| T |
1353424 |
ctcacatagcttagtggtgtttatcctaacagatttctcaacatacgactttcgttctttgacgtttgaacggccttttacgtgatgaaatcgacaataa |
1353325 |
T |
|
| Q |
120 |
tcaagaattaag |
131 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1353324 |
tcaagaattaag |
1353313 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 43365059 - 43365210
Alignment:
| Q |
39 |
gtgtctatccaaacgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaaca |
138 |
Q |
| |
|
||||||||| |||||| | |||||||| |||||| |||||||||||||| ||||| || | |||| |||||||||||||| |||||| ||| | ||| |
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|
| T |
43365059 |
gtgtctatcttaacgaaactatcatcataggactttcgttccttgtttgagcggcctggtgcttgatgaaatcgacaataattaagaatcaagctccaca |
43365158 |
T |
|
| Q |
139 |
ttgcaggagtgacttgttgaggaagacatattggagaagtcttggaagatcc |
190 |
Q |
| |
|
||| || | |||| |||||||||||||||| || | || ||||||||||||| |
|
|
| T |
43365159 |
ttggagaactgacctgttgaggaagacatactgcacaattcttggaagatcc |
43365210 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 191
Target Start/End: Original strand, 43369219 - 43369359
Alignment:
| Q |
51 |
acgaatttgtcatcatacgacttttgttccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtga |
150 |
Q |
| |
|
||||| || |||||||||| |||||||||||||| |||| ||||| || | || |||||||||||||| |||||||||| | |||||| || | | | |
|
|
| T |
43369219 |
acgaaattatcatcatacgccttttgttccttgtctgagcggcctggtgctagacgaaatcgacaataattaagaattaagctccacattgaagaactaa |
43369318 |
T |
|
| Q |
151 |
cttgttgaggaagacatattggagaagtcttggaagatcct |
191 |
Q |
| |
|
| ||||||||||||||| ||| | || |||||||||||||| |
|
|
| T |
43369319 |
cctgttgaggaagacatgttgcacaattcttggaagatcct |
43369359 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 29389250 - 29389361
Alignment:
| Q |
79 |
ccttgtttgagtggccttgtacgtgatcaaatcgacaataatcaagaattaaggttaacattgcaggagtgacttgttgaggaagacatattggagaagt |
178 |
Q |
| |
|
||||||||||| ||||| |||| |||| ||| |||||||||||||||| |||| | ||||| ||||||| ||||| || |||||||||||| | | || | |
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|
| T |
29389250 |
ccttgtttgagcggcctggtacttgatgaaaacgacaataatcaagaactaagctcaacatagcaggagagactttttcaggaagacatatcgcacaatt |
29389349 |
T |
|
| Q |
179 |
cttggaagatcc |
190 |
Q |
| |
|
||||||||||| |
|
|
| T |
29389350 |
tttggaagatcc |
29389361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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