View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4543_low_6 (Length: 388)

Name: NF4543_low_6
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4543_low_6
NF4543_low_6
[»] chr5 (1 HSPs)
chr5 (1-305)||(6769738-6770052)
[»] chr2 (1 HSPs)
chr2 (303-371)||(16150688-16150756)
[»] chr1 (2 HSPs)
chr1 (303-371)||(23301555-23301623)
chr1 (316-352)||(23301600-23301636)
[»] chr6 (4 HSPs)
chr6 (303-371)||(8925610-8925677)
chr6 (303-371)||(8935867-8935934)
chr6 (316-352)||(8925597-8925633)
chr6 (316-352)||(8935854-8935890)
[»] chr8 (1 HSPs)
chr8 (165-218)||(3067323-3067378)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 6770052 - 6769738
Alignment:
Q  1 catagaactaaataaactaactattccattgtttgacttttgttacaaagaaatattaaatagaaaagatannnnnnnnagaaaag------------gt 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||        |||||||            ||    
T  6770052 catagaactaaataaactaactattccattgtttgacttttgttacaaagaaatattaaatagaaaatatattttttttagaaaagccaaacgaaaaggt 6769953  T
Q  89 gtgcaatgaatagaaaaactagatataatcctgcagttgcgcggatatcttgaatgtttagtttgtgannnnnnnnagagaataaataactattaattat 188  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||        ||||||||||||||||||||||||    
T  6769952 gtgcaatgaatagaaaaactagatataatcctgcggttgcgcggatatcttgaatgcttagtt-gtgattttttttagagaataaataactattaattat 6769854  T
Q  189 atagagtgaagttgttgataacatatgaaagatgagtaagaacaagaaagatatatcggcattacttaaaaaacatgccagtaaacagggccggccgtag 288  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||     
T  6769853 atagagtgaagttgttgataacatatgaaagataagtaagaacaagaaagatatatcggcattacttaaaaagcatgccagtaaacagggccggctgta- 6769755  T
Q  289 ggggccctaattttttc 305  Q
    |||||||||||||||||    
T  6769754 ggggccctaattttttc 6769738  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 16150756 - 16150688
Alignment:
Q  303 ttcttacttgctttttcatgttattacatttgttatcagttgttctttcatgttgatacatttgttatt 371  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  16150756 ttcttacttgttttttcatgttattacatttgttatcagttgttctttcatattaatacatttgttatt 16150688  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 23301555 - 23301623
Alignment:
Q  303 ttcttacttgctttttcatgttattacatttgttatcagttgttctttcatgttgatacatttgttatt 371  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  23301555 ttcttacttgttttttcatgttattacatttgttattagttgttctttcatgttaatacatttgttatt 23301623  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 23301600 - 23301636
Alignment:
Q  316 tttcatgttattacatttgttatcagttgttctttca 352  Q
    |||||||||| |||||||||||| |||||||||||||    
T  23301600 tttcatgttaatacatttgttattagttgttctttca 23301636  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 8925677 - 8925610
Alignment:
Q  303 ttcttacttgctttttcatgttattacatttgttatcagttgttctttcatgttgatacatttgttatt 371  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  8925677 ttcttacttg-tttttcatgttaatacatttgttatcagttgttctttcatgttaatacatttgttatt 8925610  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 8935934 - 8935867
Alignment:
Q  303 ttcttacttgctttttcatgttattacatttgttatcagttgttctttcatgttgatacatttgttatt 371  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  8935934 ttcttacttg-tttttcatgttaatacatttgttatcagttgttctttcatgttaatacatttgttatt 8935867  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 8925633 - 8925597
Alignment:
Q  316 tttcatgttattacatttgttatcagttgttctttca 352  Q
    |||||||||| |||||||||||| |||||||||||||    
T  8925633 tttcatgttaatacatttgttattagttgttctttca 8925597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 8935890 - 8935854
Alignment:
Q  316 tttcatgttattacatttgttatcagttgttctttca 352  Q
    |||||||||| |||||||||||| |||||||||||||    
T  8935890 tttcatgttaatacatttgttattagttgttctttca 8935854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 3067323 - 3067378
Alignment:
Q  165 agagaataaataactattaatta--tatagagtgaagttgttgataacatatgaaa 218  Q
    |||||||||||||||||||||||  |||| ||| |||||||||||||||| |||||    
T  3067323 agagaataaataactattaattatttatatagtcaagttgttgataacatgtgaaa 3067378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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