View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4543_low_7 (Length: 383)
Name: NF4543_low_7
Description: NF4543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4543_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 55452910 - 55452612
Alignment:
| Q |
16 |
tcattttagtccctaagactaggtttggatatcttgtgcaaatgtaatagaatggagcaaaacaaataaaaattaagttttcaccctattgtttgattat |
115 |
Q |
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| T |
55452910 |
tcattttagtccctaagactatgtttggatatcttgtgcaaatgtaatagaatggagaaaaacaaataaaaattaagttttcaccctattgtttgattat |
55452811 |
T |
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| Q |
116 |
tctgtaatgaaacaattccatcattggaaaacaaaataaaatgaattacaactttattatatttatacatctccctttccannnnnnnctctcactctta |
215 |
Q |
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| T |
55452810 |
tctgtaatgaaacaattccatcattggaaaacaaaataaaatgaattacaact---ttatatttatacatctccctttccttttttttctctcactctta |
55452714 |
T |
|
| Q |
216 |
tagtcttattatctttcttttttcttccctatattgtgcaagcatcaaagatgcactcccccttgtcttagccccctcccctaaatta--tcataaaaat |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
55452713 |
tagtcttattatctttcttttttcttccctatattgtgcaagcatcaaagatgcact-ccccttgtcttagccccctcccctaaattatttcataaaaat |
55452615 |
T |
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