View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4545-Insertion-5 (Length: 356)

Name: NF4545-Insertion-5
Description: NF4545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4545-Insertion-5
NF4545-Insertion-5
[»] chr6 (6 HSPs)
chr6 (8-340)||(28138008-28138341)
chr6 (131-309)||(12938681-12938860)
chr6 (146-309)||(33694835-33694998)
chr6 (130-173)||(12466438-12466481)
chr6 (186-260)||(14532057-14532131)
chr6 (27-107)||(30587503-30587579)
[»] chr4 (10 HSPs)
chr4 (130-340)||(42976369-42976580)
chr4 (131-309)||(27292985-27293164)
chr4 (137-309)||(4919059-4919232)
chr4 (232-321)||(20133410-20133499)
chr4 (232-330)||(55919365-55919463)
chr4 (232-330)||(28679508-28679606)
chr4 (239-312)||(45989606-45989679)
chr4 (239-312)||(42069042-42069115)
chr4 (239-312)||(47031455-47031528)
chr4 (232-285)||(15531234-15531287)
[»] chr3 (12 HSPs)
chr3 (130-340)||(31658787-31658998)
chr3 (131-309)||(50650391-50650570)
chr3 (146-330)||(12938455-12938640)
chr3 (232-333)||(5232946-5233047)
chr3 (232-333)||(20104322-20104423)
chr3 (232-321)||(39833218-39833307)
chr3 (146-260)||(29833329-29833444)
chr3 (12-126)||(4292984-4293095)
chr3 (131-306)||(33216657-33216833)
chr3 (232-303)||(36950163-36950234)
chr3 (232-285)||(29703559-29703612)
chr3 (232-285)||(53282294-53282347)
[»] chr5 (7 HSPs)
chr5 (131-309)||(30624903-30625082)
chr5 (146-309)||(41413442-41413606)
chr5 (146-330)||(1828466-1828651)
chr5 (146-330)||(40313931-40314116)
chr5 (131-306)||(31482071-31482247)
chr5 (232-330)||(24788302-24788400)
chr5 (232-285)||(39884696-39884749)
[»] chr1 (6 HSPs)
chr1 (131-309)||(27286203-27286382)
chr1 (131-309)||(52385813-52385992)
chr1 (147-329)||(39241614-39241793)
chr1 (232-330)||(12981521-12981619)
chr1 (232-330)||(45348246-45348344)
chr1 (239-308)||(45325635-45325704)
[»] chr2 (11 HSPs)
chr2 (131-309)||(14096295-14096474)
chr2 (219-340)||(18977078-18977200)
chr2 (232-333)||(37078947-37079048)
chr2 (232-330)||(15330735-15330833)
chr2 (232-330)||(37261675-37261773)
chr2 (232-330)||(14810093-14810191)
chr2 (232-330)||(16429864-16429962)
chr2 (232-330)||(17690604-17690702)
chr2 (232-303)||(33755075-33755146)
chr2 (232-285)||(7089225-7089278)
chr2 (131-181)||(18977214-18977264)
[»] chr7 (8 HSPs)
chr7 (131-309)||(19436711-19436890)
chr7 (131-305)||(29833948-29834123)
chr7 (232-333)||(47327942-47328043)
chr7 (145-266)||(29258440-29258562)
chr7 (232-330)||(45972423-45972521)
chr7 (232-316)||(29243380-29243462)
chr7 (239-312)||(6442633-6442706)
chr7 (243-312)||(34094118-34094187)
[»] chr8 (6 HSPs)
chr8 (146-306)||(13802682-13802843)
chr8 (232-330)||(531684-531782)
chr8 (232-316)||(30945445-30945527)
chr8 (182-312)||(23613574-23613705)
chr8 (232-303)||(3879472-3879543)
chr8 (185-306)||(23614215-23614338)
[»] scaffold0166 (1 HSPs)
scaffold0166 (232-330)||(30685-30783)


Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 28138341 - 28138008
Alignment:
Q  8 gccctttcttttatcagagacattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgccgattttaatgcattt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138341 gccctttcttttatcagagacattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgccgattttaatgcattt 28138242  T
Q  108 cttagcctttatcaaaaaag-tacagtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttg 206  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138241 cttagcctttatcaaaaaaggtacagtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttg 28138142  T
Q  207 ctccatatgtcccaccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgattttt 306  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28138141 ctccatatgtcccatcatggacaagtttatttcatgatcttaaaggttagatttacttggtctctatattattgtggtacgtcatctacacatgattttt 28138042  T
Q  307 cttctagtaccaattcgctctccttttatttccc 340  Q
    ||||||||||||||||||||||||||||||||||    
T  28138041 cttctagtaccaattcgctctccttttatttccc 28138008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 131 - 309
Target Start/End: Original strand, 12938681 - 12938860
Alignment:
Q  131 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 229  Q
    |||||||||||||| ||||||| |||| |||  |||||||||||||||| || ||||||||||||||||| |||||||| ||||||| ||||||| ||||    
T  12938681 agtcgtttaattcaaccaatcagattttaagcgatgacacgtcagatgttgggacaaattttaatatggatcacttgcttcatatgttccaccatagaca 12938780  T
Q  230 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 309  Q
    |||||||||||  ||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  12938781 agtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 12938860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 146 - 309
Target Start/End: Original strand, 33694835 - 33694998
Alignment:
Q  146 ccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgatc 245  Q
    ||||||| |||| |||| ||||||||| ||||   ||| ||||||||||||||| |||||||||||||||| ||| ||| ||||| ||||||||||||||    
T  33694835 ccaatcagattttaagtgatgacacgttagataatggaaaaattttaatatggatcacttgctccatatgttccatcatagacaaatttatttcatgatc 33694934  T
Q  246 ttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 309  Q
    ||||  |||||||||| |||| || ||||||||||||||||  | |||||| ||||||||||||    
T  33694935 ttaacagttagatttatttggcctctatattattgtggtacaccctctacatatgatttttctt 33694998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 173
Target Start/End: Original strand, 12466438 - 12466481
Alignment:
Q  130 cagtcgtttaattcagccaatcaaatttcaagtcatgacacgtc 173  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  12466438 cagtcgtttaattcaaccaatcaaatttcaagtcataacacgtc 12466481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 14532131 - 14532057
Alignment:
Q  186 aattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgatcttaaaggttagattt 260  Q
    |||| ||||||| || |||||||| ||||||  ||||||||||| ||||| |||| |||||||| ||||||||||    
T  14532131 aattctaatatgaacaacttgctctatatgtttcaccatggacaggtttacttcacgatcttaatggttagattt 14532057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 30587503 - 30587579
Alignment:
Q  27 acattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgccga-ttttaatgcattt 107  Q
    |||||||||||| | ||||||||||||||||||     ||||||||||||||| |||||||||| | | |||||||||||||    
T  30587503 acattttggtctacttttttagattctctcatt-----tgtaatagggtgcaggcccactcctgactatttttaatgcattt 30587579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 130 - 340
Target Start/End: Original strand, 42976369 - 42976580
Alignment:
Q  130 cagtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatggaca 229  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||| |||||| | ||||||||||||||| ||||||||||||| |||||||||| ||||    
T  42976369 cagtcgtttaattcaaccaatcagatttcaagagatgacacgtcacatgtagaataaattttaatatggatcacttgctccataagtcccaccatagaca 42976468  T
Q  230 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcc 329  Q
    ||||| ||| |||||||||| ||||||||||||||||||| ||| ||| ||||||||  ||||||||||||||||||||||||||| |||||| ||||||    
T  42976469 agtttcttttatgatcttaacggttagatttacttggtctctatgttaatgtggtacaccatctacacatgatttttcttctagtatcaattctctctcc 42976568  T
Q  330 t-tttatttccc 340  Q
    | ||||||||||    
T  42976569 tctttatttccc 42976580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 131 - 309
Target Start/End: Original strand, 27292985 - 27293164
Alignment:
Q  131 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 229  Q
    |||||||||||||||||||||| |||||||| |||||||||||| |||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||    
T  27292985 agtcgtttaattcagccaatcagatttcaagccatgacacgtcatatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 27293084  T
Q  230 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 309  Q
    ||||||||||| |||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  27293085 agtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 27293164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 137 - 309
Target Start/End: Original strand, 4919059 - 4919232
Alignment:
Q  137 ttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggacaagttta 235  Q
    |||||||||||||||| |||||||| ||||||||||||||||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||||||||    
T  4919059 ttaattcagccaatcagatttcaagccatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagacaagttta 4919158  T
Q  236 tttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 309  Q
    ||||| |||||||| ||||||||||  ||||||| |||  |||||||||||    |||||||||||||||||||    
T  4919159 tttcaagatcttaatggttagatttgtttggtctctatgatattgtggtacacgctctacacatgatttttctt 4919232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 232 - 321
Target Start/End: Original strand, 20133410 - 20133499
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaatt 321  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  20133410 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaatt 20133499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 55919463 - 55919365
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 330  Q
    ||||||||||||| ||||  |||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  55919463 tttatttcatgattttaatagttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 55919365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 28679508 - 28679606
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 330  Q
    ||||||| ||||||||||  |||| ||||||||| ||| ||| |||||||||||   |||||||||||||||||||||||||||||||||  |||||||    
T  28679508 tttattttatgatcttaatagttaaatttacttgatctctatgttattgtggtataccatctacacatgatttttcttctagtaccaattttctctcct 28679606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 45989679 - 45989606
Alignment:
Q  239 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 312  Q
    ||||||||||| ||||||||||| ||||||| ||| |||||||||||   ||||||||||||||||||||||||    
T  45989679 catgatcttaacggttagatttaattggtctctatgttattgtggtataccatctacacatgatttttcttcta 45989606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 42069115 - 42069042
Alignment:
Q  239 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 312  Q
    ||||||||||| ||||||||||| ||| ||| ||| |||||||||||   ||||||||||||||||||||||||    
T  42069115 catgatcttaacggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttcttcta 42069042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 47031528 - 47031455
Alignment:
Q  239 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 312  Q
    ||||||||||| ||||||||||| ||| ||| ||| |||||||||||   ||||||||||||||||||||||||    
T  47031528 catgatcttaatggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttcttcta 47031455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 15531287 - 15531234
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 285  Q
    |||||||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  15531287 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 15531234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 130 - 340
Target Start/End: Complemental strand, 31658998 - 31658787
Alignment:
Q  130 cagtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatggaca 229  Q
    ||||||||||||||| ||||||| ||||||||  ||||||| ||| |||||||| ||||| ||||||||| ||||||||||||| |||||||||| ||||    
T  31658998 cagtcgtttaattcaaccaatcagatttcaagagatgacacatcacatgtaggataaattctaatatggatcacttgctccataagtcccaccatagaca 31658899  T
Q  230 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcc 329  Q
    ||||| ||| |||||||||| ||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||| || |||||| ||||||    
T  31658898 agtttcttttatgatcttaacggttagatttacttggtctctatgttattgtggtacaccatctacacatgatttttcttctaatatcaattctctctcc 31658799  T
Q  330 t-tttatttccc 340  Q
    | ||||||||||    
T  31658798 tctttatttccc 31658787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 131 - 309
Target Start/End: Complemental strand, 50650570 - 50650391
Alignment:
Q  131 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 229  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||    
T  50650570 agtcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 50650471  T
Q  230 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 309  Q
    ||||||||||| |||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  50650470 agtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 50650391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 146 - 330
Target Start/End: Original strand, 12938455 - 12938640
Alignment:
Q  146 ccaatcaaatttcaagtcatgacacgtcagatgt-aggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 244  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||| ||||| ||||||||||||||||| |||    
T  12938455 ccaatcagatttcaagccatgacacgtcagatgttaggacaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 12938554  T
Q  245 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 330  Q
    ||||| |||||| |||||||||| | ||| ||||||||||||  | | ||||||||||||||||| || | |||| || |||||||    
T  12938555 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattccaaatctctctcct 12938640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 232 - 333
Target Start/End: Original strand, 5232946 - 5233047
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 331  Q
    ||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  5232946 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 5233045  T
Q  332 tt 333  Q
    ||    
T  5233046 tt 5233047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 232 - 333
Target Start/End: Original strand, 20104322 - 20104423
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 331  Q
    |||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||  ||||||||||| | |||||||||||||||||||| ||||||||    
T  20104322 tttatttcatgatcttaatggttagatttacttgatctttatgttattgtggtacaacatctacacattaattttcttctagtaccaattctctctcctt 20104421  T
Q  332 tt 333  Q
    ||    
T  20104422 tt 20104423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 232 - 321
Target Start/End: Complemental strand, 39833307 - 39833218
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaatt 321  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||    
T  39833307 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaatt 39833218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 29833329 - 29833444
Alignment:
Q  146 ccaatcaaatttcaagtcatgacacgtcagatgta-ggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 244  Q
    ||||||| |||| |||| ||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||| ||||||| ||||  |||| || |||||    
T  29833329 ccaatcagattttaagtgatgacacgtcagaagtaaggacaaattataatatggatcacttgctccatatgttccaccatagacagatttacttgatgat 29833428  T
Q  245 cttaaaggttagattt 260  Q
    ||||| ||||||||||    
T  29833429 cttaatggttagattt 29833444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 4292984 - 4293095
Alignment:
Q  12 tttcttttatcagagacattttggtctccatttttagattctctcattaatactgtaatagggtgcagacccactcctgcc--gattttaatgcatttct 109  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||||||     ||||||||||||||| ||||||||||||    ||||||||||||| |    
T  4292984 tttctttaatcaaagacattttggtctccatttttagactctctcatt-----tgtaatagggtgcaggcccactcctgccttttttttaatgcattttt 4293078  T
Q  110 tagcctttatcaaaaaa 126  Q
    |||||||||| ||||||    
T  4293079 tagcctttataaaaaaa 4293095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 306
Target Start/End: Complemental strand, 33216833 - 33216657
Alignment:
Q  131 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtag-gacaaattttaatatggaccacttgctccatatgtcccaccatggaca 229  Q
    |||||||| | | ||||||||| |||| |||| ||||||||||  | |||  |||||||| ||||||||| |||||||||||||||| ||||||| ||||    
T  33216833 agtcgtttgaatgagccaatcagattttaagtgatgacacgtcctaagtaatgacaaattataatatggatcacttgctccatatgttccaccatagaca 33216734  T
Q  230 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgattttt 306  Q
      |||| ||||||||||||| ||||||||||  |||| || |||  |||| ||||||  ||||||| ||| ||||||    
T  33216733 gatttacttcatgatcttaatggttagatttgtttggcctctatggtattatggtacagcatctacgcataattttt 33216657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 36950234 - 36950163
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatt 303  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||  |  |||||||||||||    
T  36950234 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatattgtctacacatgatt 36950163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 29703612 - 29703559
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 285  Q
    |||||||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  29703612 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 29703559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 53282294 - 53282347
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 285  Q
    |||||||||| ||||||| |||||||||||||| |||| ||| |||||||||||    
T  53282294 tttatttcattatcttaatggttagatttacttagtctctatgttattgtggta 53282347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 131 - 309
Target Start/End: Original strand, 30624903 - 30625082
Alignment:
Q  131 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 229  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||| || | ||||||||||||||| |||||||| ||||||| ||||||| ||||    
T  30624903 agtcgtttaattcaaccaatcagatttcaagtcatgacacgtcagatgttgggataaattttaatatggatcacttgcttcatatgttccaccatagaca 30625002  T
Q  230 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 309  Q
    |||||||||||  || |||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  30625003 agtttatttcaaaattttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 30625082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 146 - 309
Target Start/End: Complemental strand, 41413606 - 41413442
Alignment:
Q  146 ccaatcaaatttcaagtcatgacacgtcagatgt-aggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 244  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||| ||||| ||||||||||||||||| |||    
T  41413606 ccaatcagatttcaagccatgacacgtcagatgttaggacaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 41413507  T
Q  245 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 309  Q
    ||||| |||||| |||||||||| | ||| ||||||||||||  | | |||||||||||||||||    
T  41413506 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttctt 41413442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 146 - 330
Target Start/End: Original strand, 1828466 - 1828651
Alignment:
Q  146 ccaatcaaatttcaagtcatgacacgtcagatgt-aggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 244  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||| ||||||||| |||||||| ||||||| ||||| ||||||||||||||||| |||    
T  1828466 ccaatcagatttcaagccatgacacgtcagatgttatgacaaattataatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 1828565  T
Q  245 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 330  Q
    ||||| |||||| |||||||||| | ||| ||||||||||||  | | ||||||||||||||||| || | |||| || |||||||    
T  1828566 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattccaaatctctctcct 1828651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 146 - 330
Target Start/End: Original strand, 40313931 - 40314116
Alignment:
Q  146 ccaatcaaatttcaagtcatgacacgtcagatgt-aggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 244  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||||  |||||||| |||||||| ||||||| ||||| ||||||||||||||||| |||    
T  40313931 ccaatcagatttcaagccatgacacgtcagatgttaggacaaattacaatatggatcacttgcttcatatgttccaccgtggacaagtttatttcaagat 40314030  T
Q  245 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 330  Q
    ||||| |||||| |||||||||| | ||| ||||||||||||  | | ||||||||||||||||| || | |||| || |||||||    
T  40314031 cttaacggttaggtttacttggtgtctatgttattgtggtacaccctttacacatgatttttcttataattccaaatctctctcct 40314116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 131 - 306
Target Start/End: Complemental strand, 31482247 - 31482071
Alignment:
Q  131 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgta-ggacaaattttaatatggaccacttgctccatatgtcccaccatggaca 229  Q
    |||||||| | | |||||||||||||| |||| ||||||| ||||| ||| ||||||||| ||||||||| |||||||||||||||| ||||||| ||||    
T  31482247 agtcgtttgaatgagccaatcaaattttaagtgatgacacttcagaagtaaggacaaattataatatggatcacttgctccatatgttccaccatagaca 31482148  T
Q  230 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgattttt 306  Q
      |||| ||||||||||||| ||||||||||  ||||||| |||  |||| ||||||  ||||||||||| ||||||    
T  31482147 gatttacttcatgatcttaatggttagatttgtttggtctctatggtattatggtacaccatctacacataattttt 31482071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 24788400 - 24788302
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 330  Q
    ||||||| ||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  24788400 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 24788302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 39884696 - 39884749
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 285  Q
    |||||||||||||||||| |||||||||||||| |||| ||| |||||||||||    
T  39884696 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggta 39884749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 131 - 309
Target Start/End: Original strand, 27286203 - 27286382
Alignment:
Q  131 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtaggacaaatttt-aatatggaccacttgctccatatgtcccaccatggaca 229  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| ||  ||||||| |||||||| |||||||| ||||||| ||||||| ||||    
T  27286203 agtcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggaaaatttttaatatggatcacttgcttcatatgttccaccatagaca 27286302  T
Q  230 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 309  Q
    |||||||||||  ||||||| ||||||||||  ||||||| ||| ||||||||||||  | |||||||||||||||||||    
T  27286303 agtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggtacaccctctacacatgatttttctt 27286382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 131 - 309
Target Start/End: Complemental strand, 52385992 - 52385813
Alignment:
Q  131 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 229  Q
    |||||||||||||||||||||| |||||||| |||||||| ||| |||| || ||||||| ||| ||||| ||| || | ||||||| ||||||| ||||    
T  52385992 agtcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattctaaaatggatcacgtgtttcatatgttccaccatagaca 52385893  T
Q  230 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 309  Q
    ||||||||||| |||||| | ||||||||||  ||| ||| ||| ||||||||||||  | |||||||||||||||||||    
T  52385892 agtttatttcaagatctttacggttagatttgtttgatctctatgttattgtggtacaccctctacacatgatttttctt 52385813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 147 - 329
Target Start/End: Original strand, 39241614 - 39241793
Alignment:
Q  147 caatcaaatttcaagtcatgacacgtcagatgtag-gacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgatc 245  Q
    |||||| |||| |||| || ||||||||||||| | |||||||| ||||||| | |||||||| ||||||| ||||||| ||||||||||||||||||||    
T  39241614 caatcagattttaagtgataacacgtcagatgttgagacaaattctaatatg-atcacttgcttcatatgttccaccatagacaagtttatttcatgatc 39241712  T
Q  246 ttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcc 329  Q
    |||| |||||||||||| ||   | | | ||||||||||||  |||||||||||||||||||||||| |  |||||| ||||||    
T  39241713 ttaacggttagatttacctg---tctttgttattgtggtacaccatctacacatgatttttcttctaattacaattctctctcc 39241793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 12981521 - 12981619
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 330  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  12981521 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 12981619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 45348344 - 45348246
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 330  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  45348344 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 45348246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 308
Target Start/End: Complemental strand, 45325704 - 45325635
Alignment:
Q  239 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttct 308  Q
    ||||||||||| ||||||||||| || |||| ||| |||||||||||   ||||||||||||||||||||    
T  45325704 catgatcttaacggttagatttaattagtctctatgttattgtggtataccatctacacatgatttttct 45325635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 131 - 309
Target Start/End: Original strand, 14096295 - 14096474
Alignment:
Q  131 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 229  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||    
T  14096295 agtcgtttaattcagccaatcagatttcaagacatgacacgtcagatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 14096394  T
Q  230 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 309  Q
    ||||||||||| ||||||||  |||||||||  ||||||| |||  |||||||||||    |||||||||||||||||||    
T  14096395 agtttatttcaagatcttaaccgttagatttgtttggtctctatgatattgtggtacacgctctacacatgatttttctt 14096474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 219 - 340
Target Start/End: Complemental strand, 18977200 - 18977078
Alignment:
Q  219 caccatggacaagtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtacca 318  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| |||| ||| ||||||||||||  ||||||||||| | ||||||||||||||||    
T  18977200 caccatggacaagtttatttcatgatcttaacagttagatttacttagtctctatgttattgtggtacaccatctacacataacttttcttctagtacca 18977101  T
Q  319 attcgctctcct-tttatttccc 340  Q
    |||  ||||||| ||||||||||    
T  18977100 attatctctcctctttatttccc 18977078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 232 - 333
Target Start/End: Original strand, 37078947 - 37079048
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 331  Q
    ||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  37078947 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 37079046  T
Q  332 tt 333  Q
    ||    
T  37079047 tt 37079048  T

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Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 15330735 - 15330833
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 330  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  15330735 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 15330833  T

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Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 37261773 - 37261675
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 330  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  37261773 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 37261675  T

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Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 14810191 - 14810093
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 330  Q
    ||||||||||||| |||| ||||||||||| ||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  14810191 tttatttcatgattttaatggttagatttatttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 14810093  T

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Target: chr2; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 16429864 - 16429962
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 330  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||| ||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  16429864 tttatttcatgattttaatggttagatttacttgatctctatgttattatggtacaccatctacacatgatttttcttctagtaccaattttctctcct 16429962  T

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Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 17690604 - 17690702
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 330  Q
    ||||||| ||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  17690604 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 17690702  T

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Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 33755146 - 33755075
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatt 303  Q
    ||||||||||||| |||| ||||||||||||||||||||||| |||||||||||  |  |||||||||||||    
T  33755146 tttatttcatgatattaatggttagatttacttggtctatatgttattgtggtatattgtctacacatgatt 33755075  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 7089225 - 7089278
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggta 285  Q
    |||||||||||||||||| ||||||||||||||| ||| ||| |||||||||||    
T  7089225 tttatttcatgatcttaatggttagatttacttgatctctatgttattgtggta 7089278  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 18977264 - 18977214
Alignment:
Q  131 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtag 181  Q
    |||||||||||||||||||||| |||| |||| ||||||||||| ||||||    
T  18977264 agtcgtttaattcagccaatcagattttaagtgatgacacgtcacatgtag 18977214  T

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Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 131 - 309
Target Start/End: Original strand, 19436711 - 19436890
Alignment:
Q  131 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 229  Q
    |||||||||||||||||||||| |||||||| ||||| |||||| |||| || ||||||| ||||||||| |||||| | ||||||| ||||||| ||||    
T  19436711 agtcgtttaattcagccaatcagatttcaagccatgatacgtcatatgttgggacaaattctaatatggatcacttgtttcatatgttccaccatagaca 19436810  T
Q  230 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttctt 309  Q
    ||||||||||| ||||||||  |||||||||  ||||||| ||| ||||||||||||  | | |||||||||||||||||    
T  19436811 agtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggtacaccctatacacatgatttttctt 19436890  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 131 - 305
Target Start/End: Complemental strand, 29834123 - 29833948
Alignment:
Q  131 agtcgtttaattcagccaatcaaatttcaagtcatgacacgtcagatgtagg-acaaattttaatatggaccacttgctccatatgtcccaccatggaca 229  Q
    |||||||||||||||||||||| |||||||| ||||||| ||||||||| || ||||| | ||||||||| |||||||| ||||||| ||||||| ||||    
T  29834123 agtcgtttaattcagccaatcagatttcaagccatgacatgtcagatgttgggacaaactctaatatggatcacttgcttcatatgttccaccatagaca 29834024  T
Q  230 agtttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttt 305  Q
    ||||||||||| ||||||||  |||||||||  ||||||| ||| |||||||||||   | ||| |||||||||||    
T  29834023 agtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggtaaaccctctgcacatgatttt 29833948  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 232 - 333
Target Start/End: Original strand, 47327942 - 47328043
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcctt 331  Q
    ||||||||||||||||||  |||||||||||||| ||| ||| ||||||||||||  ||||||||||||| |||||||||||||||||||| ||||||||    
T  47327942 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggtacaacatctacacatgaattttcttctagtaccaattctctctcctt 47328041  T
Q  332 tt 333  Q
    ||    
T  47328042 tt 47328043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 145 - 266
Target Start/End: Original strand, 29258440 - 29258562
Alignment:
Q  145 gccaatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 244  Q
    |||||||| ||||||||| ||||||||||||||   ||||||||| ||| ||||| |||||||||||| ||| ||||| |||||||||||||||||| ||    
T  29258440 gccaatcagatttcaagtgatgacacgtcagataatggacaaattctaacatggatcacttgctccatgtgttccaccgtggacaagtttatttcataat 29258539  T
Q  245 c-ttaaaggttagatttacttgg 266  Q
    | |||| ||||||||||||||||    
T  29258540 ctttaacggttagatttacttgg 29258562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 45972423 - 45972521
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 330  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  45972423 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 45972521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 29243380 - 29243462
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtac 316  Q
    |||||||||||||||||| ||||||||||||||| ||| |||  |||||||||||  ||||||||||||||||||||||||||||    
T  29243380 tttatttcatgatcttaatggttagatttacttgatctctat--tattgtggtacaccatctacacatgatttttcttctagtac 29243462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 6442633 - 6442706
Alignment:
Q  239 catgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 312  Q
    |||||||||||  |||||||||| ||||||| ||| |||||||||||   ||||||||||||||||||||||||    
T  6442633 catgatcttaactgttagatttaattggtctctatgttattgtggtataccatctacacatgatttttcttcta 6442706  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 34094118 - 34094187
Alignment:
Q  243 atcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttcta 312  Q
    ||||||| ||||||||||| ||| ||| ||| |||||||||||   ||||||||||||||||||||||||    
T  34094118 atcttaacggttagatttaattgatctctatgttattgtggtataccatctacacatgatttttcttcta 34094187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 146 - 306
Target Start/End: Complemental strand, 13802843 - 13802682
Alignment:
Q  146 ccaatcaaatttcaagtcatgacacgtcagatgta-ggacaaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcatgat 244  Q
    ||||||| |||| |||| ||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||| ||||||| ||||  |||| || |||||    
T  13802843 ccaatcagattttaagtgatgacacgtcagaagtaaggacaaattataatatggatcacttgctccatatgttccaccatagacagatttacttgatgat 13802744  T
Q  245 cttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgattttt 306  Q
    ||||| ||||||||||  ||||||| |||  |||| ||||||  ||||||||||| ||||||    
T  13802743 cttaatggttagatttgtttggtctctatcgtattatggtacaccatctacacataattttt 13802682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 232 - 330
Target Start/End: Original strand, 531684 - 531782
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 330  Q
    |||||||||| || |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  531684 tttatttcataattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 531782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 232 - 316
Target Start/End: Complemental strand, 30945527 - 30945445
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtac 316  Q
    |||||||||||||||||| ||||||||||||||| ||| |||  |||||||||||  ||||||||||||||||||||||||||||    
T  30945527 tttatttcatgatcttaatggttagatttacttgatctctat--tattgtggtacaccatctacacatgatttttcttctagtac 30945445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 312
Target Start/End: Original strand, 23613574 - 23613705
Alignment:
Q  182 gacaaattttaatatggaccacttgctccatatgtcccaccatggacaa-gtttatttcatgatcttaaaggttagatttacttggtctatatattattg 280  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||| ||  ||| ||| | |||||||| ||||||||||  |||||||  ||  |||||    
T  23613574 gacaaattctaatatggaccacttgctcaatatgttccaccatggataactttttttttaagatcttaacggttagatttgtttggtctccatgatattg 23613673  T
Q  281 tggtacgtcatctacacatgatttttcttcta 312  Q
    ||||||  | |||||||||||||||| |||||    
T  23613674 tggtacagcctctacacatgatttttgttcta 23613705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 3879543 - 3879472
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatt 303  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||  |  |||||||||||||    
T  3879543 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtatattgtctacacatgatt 3879472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 306
Target Start/End: Original strand, 23614215 - 23614338
Alignment:
Q  185 aaattttaatatggaccacttgctccatatgtcccaccatggacaagtttatttcat--gatcttaaaggttagatttacttggtctatatattattgtg 282  Q
    ||||| |||||| ||||||||| || ||||||  ||| |||||||| ||| |||  |  |||||||| ||||||||||  |||||||  ||| |||||||    
T  23614215 aaattctaatatagaccacttgatcaatatgtttcactatggacaacttttttttttaagatcttaacggttagatttgtttggtctccataatattgtg 23614314  T
Q  283 gtacgtcatctacacatgattttt 306  Q
    | ||  | ||||||||||||||||    
T  23614315 gcacaccctctacacatgattttt 23614338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 30783 - 30685
Alignment:
Q  232 tttatttcatgatcttaaaggttagatttacttggtctatatattattgtggtacgtcatctacacatgatttttcttctagtaccaattcgctctcct 330  Q
    ||||||| ||||| |||| ||||||||||||||| ||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||  |||||||    
T  30783 tttattttatgattttaatggttagatttacttgatctctatgttattgtggtacaccatctacacatgatttttcttctagtaccaattttctctcct 30685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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