View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4545-Insertion-6 (Length: 322)
Name: NF4545-Insertion-6
Description: NF4545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4545-Insertion-6 |
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| [»] chr1 (7 HSPs) |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 322
Target Start/End: Original strand, 51807753 - 51808062
Alignment:
| Q |
7 |
agatatatggtataatatacgaaaaccattttccatttctgtgtagtatctatatcagcttaactcctcttgcagttgctagttgagttgcgcgtatcta |
106 |
Q |
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| T |
51807753 |
agatatatggtataatatacgaaaaccattttccatttctgtgtagtatctatatcagctttactcctcttgc------tagttgagttgcgcatatcta |
51807846 |
T |
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| Q |
107 |
attctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaa |
206 |
Q |
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| T |
51807847 |
attctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatctaaaacaataaagagaactttgagcttaggggctcaaattcttcaaa |
51807946 |
T |
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| Q |
207 |
tgggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgcagtgttatctatccaccacatctggtcc |
306 |
Q |
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| T |
51807947 |
tgggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcacagtgttatctatccaccacatctggtcc |
51808046 |
T |
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| Q |
307 |
tctagctggtctgctc |
322 |
Q |
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| T |
51808047 |
tctagctggtctgctc |
51808062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 100 - 318
Target Start/End: Original strand, 51803887 - 51804105
Alignment:
| Q |
100 |
gtatctaattctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaatt |
199 |
Q |
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| T |
51803887 |
gtatctaattctctttatataactctgaaaaatttcagtgagatcgggagcaaacatatctaaaacaataaagaggacgttgaacttaggggctcaaatt |
51803986 |
T |
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| Q |
200 |
cttcaaatgggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgcagtgttatctatccaccacat |
299 |
Q |
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| T |
51803987 |
cttcaaatgggtggagtggagaaaatgtttaggcagtattttagtgtgagagaaggagagaggctatcaaaagtttcgcagtgttatctttccaccacat |
51804086 |
T |
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| Q |
300 |
ctggtcctctagctggtct |
318 |
Q |
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| T |
51804087 |
ccggtcctctatctggtct |
51804105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 129 - 318
Target Start/End: Original strand, 51772294 - 51772483
Alignment:
| Q |
129 |
aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt |
228 |
Q |
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| T |
51772294 |
aaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtt |
51772393 |
T |
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| Q |
229 |
tacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgcagtgttatctatccaccacatctggtcctctagctggtct |
318 |
Q |
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| T |
51772394 |
tatgcggtattttagtgtgagtgaggacgagagcctgttgaaaatttcgcagtgttatctatccaccacatctggccctctagccggtct |
51772483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 129 - 248
Target Start/End: Original strand, 51780160 - 51780279
Alignment:
| Q |
129 |
aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt |
228 |
Q |
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| T |
51780160 |
aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggagtggataaattttt |
51780259 |
T |
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| Q |
229 |
tacgcaatattttagtgtga |
248 |
Q |
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| T |
51780260 |
tatgcactattttagtgtga |
51780279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 312
Target Start/End: Complemental strand, 12196322 - 12196190
Alignment:
| Q |
180 |
tgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgca |
279 |
Q |
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| T |
12196322 |
tgagcttaggagctagaattcttcaagttggaggagtggaaaaggtgttcatgcaactatttagtgtaaaagatggagagaggctactaaaagcatctca |
12196223 |
T |
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| Q |
280 |
gtgttatctatccaccacatctggtcctctagc |
312 |
Q |
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| T |
12196222 |
atgttatctatcaacaacatctggtcctctagc |
12196190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 51761302 - 51761406
Alignment:
| Q |
127 |
aaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagctta-ggggctcaaattcttcaaatgggtggagtggagaaagt |
225 |
Q |
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|||||||||||||||||| |||| ||||||||| ||||||||||||||| || || | ||||||| ||||||| || |||||| |||||||||| | |
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| T |
51761302 |
aaaaatttcagtgagagtgggagaaaacatatcagaaacaataaagaggaagttaagtacagggggctcgaattcttgaagtgggtgaagtggagaaaat |
51761401 |
T |
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| Q |
226 |
gttta |
230 |
Q |
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||||| |
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| T |
51761402 |
gttta |
51761406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 51780290 - 51780336
Alignment:
| Q |
269 |
aaagtttcgcagtgttatctatccaccacatctggtcctctagctgg |
315 |
Q |
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| T |
51780290 |
aaagtttctcactgttatctttccaccacatctggccctctagctgg |
51780336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 129 - 248
Target Start/End: Original strand, 6802 - 6921
Alignment:
| Q |
129 |
aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt |
228 |
Q |
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|||||||| | ||| | ||||||||||| ||| ||||||||| ||||| ||||||||||||||| |||||||| || ||||||||||||| ||| | || |
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| T |
6802 |
aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggagtggataaattttt |
6901 |
T |
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| Q |
229 |
tacgcaatattttagtgtga |
248 |
Q |
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|| ||| ||||||||||||| |
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| T |
6902 |
tatgcactattttagtgtga |
6921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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