View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4545_high_10 (Length: 261)

Name: NF4545_high_10
Description: NF4545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4545_high_10
NF4545_high_10
[»] chr6 (3 HSPs)
chr6 (19-253)||(28138336-28138570)
chr6 (83-154)||(6982835-6982906)
chr6 (89-152)||(10501975-10502038)
[»] chr5 (3 HSPs)
chr5 (83-170)||(33417416-33417503)
chr5 (79-148)||(31610042-31610111)
chr5 (134-173)||(15867381-15867420)
[»] chr8 (3 HSPs)
chr8 (83-173)||(6596498-6596588)
chr8 (85-154)||(19168178-19168247)
chr8 (88-173)||(40715928-40716013)
[»] chr7 (5 HSPs)
chr7 (83-173)||(8308208-8308298)
chr7 (88-173)||(38836121-38836206)
chr7 (83-154)||(49094543-49094614)
chr7 (82-154)||(30559359-30559431)
chr7 (89-152)||(25862613-25862676)
[»] chr2 (7 HSPs)
chr2 (83-148)||(21949895-21949960)
chr2 (79-132)||(41411516-41411569)
chr2 (85-132)||(40275158-40275205)
chr2 (79-148)||(9446973-9447042)
chr2 (81-154)||(14555887-14555960)
chr2 (97-173)||(18559723-18559799)
chr2 (82-154)||(38346691-38346763)
[»] chr4 (3 HSPs)
chr4 (79-153)||(39735815-39735889)
chr4 (88-173)||(2048966-2049051)
chr4 (85-154)||(3958945-3959014)
[»] chr1 (2 HSPs)
chr1 (79-152)||(42080685-42080758)
chr1 (85-132)||(43403894-43403941)
[»] scaffold0141 (1 HSPs)
scaffold0141 (85-151)||(16533-16599)
[»] scaffold0060 (1 HSPs)
scaffold0060 (85-154)||(18923-18991)
[»] chr3 (1 HSPs)
chr3 (110-154)||(11536252-11536296)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 28138336 - 28138570
Alignment:
Q  19 aagggcgagaagcatagctttgctagtaaaccaaagaaaggaaactgtcaaacaacaaatacagtcacaaatatttaggattacttttgactacaccctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28138336 aagggcgagaagcatagctttgctagtaaaccaaagaaaggaaactgtcaaacaacaaatacagtcacaaatatttaggattacttttgactacaccctt 28138435  T
Q  119 tttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtctannnnnnnnnnnnnnnnnnnnnnngttcttggttgttgccagacag 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                       ||||||||||||||||||||||    
T  28138436 tttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtctatttttctgctttttttcctttttgttcttggttgttgccagacag 28138535  T
Q  219 acaaggctagaatcatgctctccattagtataatc 253  Q
    |||||||||||||||||||||||||||||||||||    
T  28138536 acaaggctagaatcatgctctccattagtataatc 28138570  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 6982906 - 6982835
Alignment:
Q  83 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 154  Q
    ||||||||||||| |||| ||||||| |||||||||||| |||||||||| |||||||| ||||||| ||||    
T  6982906 tcacaaatatttaagattgcttttgattacacccttttttgaacgagtttgtatgtgctcactacttatgct 6982835  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 10501975 - 10502038
Alignment:
Q  89 atatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtg 152  Q
    |||||| ||||| ||||| | |||||||||||| ||||||||||  ||||||||||||||||||    
T  10501975 atatttgggattgctttttattacaccctttttggaacgagtttggatgtgcttactacttgtg 10502038  T

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Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 33417503 - 33417416
Alignment:
Q  83 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgt 170  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||||||| || ||||||||||||    
T  33417503 tcacaaatatttaggattacttttgattacaccctttttagaacgaatttgtatgtgctcactacttgtgctttttggtgaaacttgt 33417416  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 31610111 - 31610042
Alignment:
Q  79 acagtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactact 148  Q
    |||||| || |||||| ||||| |||||||  ||||||||||||||||| |||| |||||||| ||||||    
T  31610111 acagtcgcatatatttgggattgcttttgatcacaccctttttagaacgcgtttgtatgtgctcactact 31610042  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 15867381 - 15867420
Alignment:
Q  134 tatgtgcttactacttgtgctcttcggtgaaacttgtcta 173  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  15867381 tatgtgcttactacttgtgctttttggtgaaacttgtcta 15867420  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 6596588 - 6596498
Alignment:
Q  83 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtcta 173  Q
    |||||||||||||||||| ||||||| |||||||||||||||| ||||||  ||||||| ||||||| |||| ||||||||||||||||||    
T  6596588 tcacaaatatttaggattgcttttgattacaccctttttagaatgagtttggatgtgctcactacttatgcttttcggtgaaacttgtcta 6596498  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 19168247 - 19168178
Alignment:
Q  85 acaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 154  Q
    |||||| ||| | ||| |||||||  |||||||||||||||||||||| |||||||| | || |||||||    
T  19168247 acaaatttttggaattgcttttgatgacaccctttttagaacgagtttgtatgtgctcaataattgtgct 19168178  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 40716013 - 40715928
Alignment:
Q  88 aatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtcta 173  Q
    ||||||||||||| |||||||   || | |||||  ||||||||| |||||||| |||||||||| | || ||||||| |||||||    
T  40716013 aatatttaggattgcttttgatagcatcttttttgaaacgagtttgtatgtgctcactacttgtgttttttggtgaaatttgtcta 40715928  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 8308208 - 8308298
Alignment:
Q  83 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtcta 173  Q
    |||||||||||| ||||||||||||| ||||  ||||||||||||||||| |||||||| ||||||||| || ||| ||||||||||||||    
T  8308208 tcacaaatatttgggattacttttgattacattctttttagaacgagtttgtatgtgctcactacttgtacttttcagtgaaacttgtcta 8308298  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 38836206 - 38836121
Alignment:
Q  88 aatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtcta 173  Q
    ||||||| ||||| |||||||  ||||| ||||| |||||||||| ||| |||| |||||||||||| || |||||||||||||||    
T  38836206 aatatttgggattgcttttgataacaccatttttggaacgagtttgtatatgctcactacttgtgctttttggtgaaacttgtcta 38836121  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 49094543 - 49094614
Alignment:
Q  83 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 154  Q
    |||||||||||| ||||| |||||||  ||||| ||||| ||||| |||| |||||||| ||||||||||||    
T  49094543 tcacaaatatttgggattgcttttgataacaccttttttggaacgtgtttgtatgtgctcactacttgtgct 49094614  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 30559359 - 30559431
Alignment:
Q  82 gtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 154  Q
    ||||||||| ||| ||||| |||||||  ||||||||||| |||| ||||| |||||||| || |||||||||    
T  30559359 gtcacaaatctttgggattgcttttgataacaccctttttggaacaagtttctatgtgctcacgacttgtgct 30559431  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 25862613 - 25862676
Alignment:
Q  89 atatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtg 152  Q
    |||||||||||| ||||| | |||||||||||| || |||||||  ||||||| ||||||||||    
T  25862613 atatttaggattgcttttaattacaccctttttggatcgagtttggatgtgctcactacttgtg 25862676  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 21949895 - 21949960
Alignment:
Q  83 tcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactact 148  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  21949895 tcacaaatatttgggattgcttttgattacaccctttttagaacgagtttgtatgtgctcactact 21949960  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 41411516 - 41411569
Alignment:
Q  79 acagtcacaaatatttaggattacttttgactacaccctttttagaacgagttt 132  Q
    |||||||||||||||| ||||| ||||||| |||||||||||| ||||||||||    
T  41411516 acagtcacaaatatttgggattgcttttgattacaccctttttggaacgagttt 41411569  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 40275205 - 40275158
Alignment:
Q  85 acaaatatttaggattacttttgactacaccctttttagaacgagttt 132  Q
    |||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  40275205 acaaatatttgggattgcttttgatgacaccctttttagaacgagttt 40275158  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 9447042 - 9446973
Alignment:
Q  79 acagtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactact 148  Q
    ||||||||| |||||| ||||| |||||||  ||||||||||| ||||| |||| | |||||| ||||||    
T  9447042 acagtcacatatatttgggattgcttttgatcacaccctttttggaacgcgtttgtgtgtgctcactact 9446973  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 14555960 - 14555887
Alignment:
Q  81 agtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 154  Q
    ||||||| |||||| ||||| |||||||  ||||||||||| |||||||||| ||| || | ||| ||||||||    
T  14555960 agtcacatatatttgggattgcttttgatcacaccctttttggaacgagtttgtatatgatcactgcttgtgct 14555887  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 18559723 - 18559799
Alignment:
Q  97 gattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtcta 173  Q
    |||| ||||||| ||| ||||||||||||||||||| ||| ||||   ||||| | || || |||||||||||||||    
T  18559723 gattgcttttgattacgccctttttagaacgagtttgtatctgctcgttacttatactttttggtgaaacttgtcta 18559799  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 38346691 - 38346763
Alignment:
Q  82 gtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 154  Q
    |||||||||||||||||||  |||| || ||| ||||||  |||||||| | ||| |||| ||||||||||||    
T  38346691 gtcacaaatatttaggattgttttttaccacatccttttgtgaacgagtatgtatctgctcactacttgtgct 38346763  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 39735889 - 39735815
Alignment:
Q  79 acagtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgc 153  Q
    ||||||||| |||||| ||||| ||||||| ||||||||| || |||||||||| |||||||| |||||||||||    
T  39735889 acagtcacatatattttggattgcttttgattacacccttcttggaacgagtttgtatgtgctcactacttgtgc 39735815  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 2049051 - 2048966
Alignment:
Q  88 aatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgctcttcggtgaaacttgtcta 173  Q
    ||||||| ||||| |||||||  ||||||||||| |||||||||| ||| |||| |||||||||||| || | |||||||||||||    
T  2049051 aatatttgggattgcttttgataacaccctttttggaacgagtttgtatatgctcactacttgtgctttttgatgaaacttgtcta 2048966  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 3958945 - 3959014
Alignment:
Q  85 acaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 154  Q
    |||||||||| ||||| |||||||  |||||||||||||||||||||| |||||||| |||| |||||||    
T  3958945 acaaatatttgggattgcttttgatgacaccctttttagaacgagtttgtatgtgctcactatttgtgct 3959014  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 42080685 - 42080758
Alignment:
Q  79 acagtcacaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtg 152  Q
    ||||||| | |||||| ||||| ||||||| |||||||||||| ||||||||||  ||||||| ||||||||||    
T  42080685 acagtcaaacatatttgggattgcttttgattacaccctttttggaacgagtttggatgtgctcactacttgtg 42080758  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 43403894 - 43403941
Alignment:
Q  85 acaaatatttaggattacttttgactacaccctttttagaacgagttt 132  Q
    |||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  43403894 acaaatatttgggattgcttttgatgacaccctttttagaacgagttt 43403941  T

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Target: scaffold0141 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 16533 - 16599
Alignment:
Q  85 acaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgt 151  Q
    |||||||||| ||||| |||||||  |||||||| || ||||||||||||||||||| ||| |||||    
T  16533 acaaatattttggattgcttttgatcacacccttcttggaacgagtttatatgtgctcactccttgt 16599  T

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Target: scaffold0060 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 18991 - 18923
Alignment:
Q  85 acaaatatttaggattacttttgactacaccctttttagaacgagtttatatgtgcttactacttgtgct 154  Q
    |||||||||| ||||| |||||||  |||||||||| ||||||||||| |||||||| | || |||||||    
T  18991 acaaatatttgggattgcttttgatgacaccctttt-agaacgagtttgtatgtgctcaataattgtgct 18923  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 11536296 - 11536252
Alignment:
Q  110 tacaccctttttagaacgagtttatatgtgcttactacttgtgct 154  Q
    ||||||||||||  ||||||||| |||||||| ||||||||||||    
T  11536296 tacacccttttttaaacgagtttgtatgtgctcactacttgtgct 11536252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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