View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4545_high_2 (Length: 387)

Name: NF4545_high_2
Description: NF4545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4545_high_2
NF4545_high_2
[»] chr4 (9 HSPs)
chr4 (17-370)||(37897563-37897916)
chr4 (60-193)||(37895664-37895793)
chr4 (153-250)||(9568982-9569076)
chr4 (306-365)||(9569099-9569158)
chr4 (302-361)||(54295196-54295255)
chr4 (153-259)||(9602763-9602866)
chr4 (306-365)||(9593887-9593946)
chr4 (154-250)||(54295274-54295367)
chr4 (302-352)||(9574226-9574276)
[»] chr6 (21 HSPs)
chr6 (33-259)||(29144967-29145189)
chr6 (149-257)||(29299861-29299969)
chr6 (58-197)||(29012537-29012672)
chr6 (64-255)||(34281623-34281807)
chr6 (59-188)||(32745131-32745256)
chr6 (174-259)||(23218780-23218865)
chr6 (65-186)||(25319548-25319666)
chr6 (65-186)||(26149241-26149359)
chr6 (59-188)||(29123805-29123928)
chr6 (50-257)||(29131002-29131199)
chr6 (72-134)||(29152394-29152456)
chr6 (59-190)||(32960996-32961123)
chr6 (303-365)||(34258366-34258428)
chr6 (302-371)||(29145199-29145268)
chr6 (59-188)||(29136958-29137083)
chr6 (296-365)||(34281815-34281884)
chr6 (205-260)||(26090892-26090947)
chr6 (64-127)||(29149028-29149091)
chr6 (302-364)||(29131211-29131273)
chr6 (215-255)||(29152318-29152358)
chr6 (64-132)||(34278773-34278841)
[»] scaffold0134 (2 HSPs)
scaffold0134 (23-259)||(16410-16642)
scaffold0134 (302-358)||(16344-16400)
[»] chr7 (2 HSPs)
chr7 (47-193)||(42446008-42446150)
chr7 (215-259)||(42446187-42446231)
[»] scaffold0054 (2 HSPs)
scaffold0054 (62-258)||(40004-40187)
scaffold0054 (62-258)||(33653-33836)
[»] scaffold0613 (2 HSPs)
scaffold0613 (174-259)||(5-90)
scaffold0613 (302-358)||(100-156)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 37897563 - 37897916
Alignment:
Q  17 gatatcatatcttcagattggttgggagacatctctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgaca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37897563 gatatcatatcttcagattggttgggagacatctctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgaca 37897662  T
Q  117 tgccgtcttctttggactatgctgagggcacccacccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37897663 tgccgtcttctttggactatgctgagggcacccacccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatg 37897762  T
Q  217 gaccatgtctggtgtcattttacttgagcaatgatgtgttctttgagatgattgttttgatgagtgtgtcattggttgtaacagtcataccctcagactt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37897763 gaccatgtctggtgtcattttacttgagcaatgatgtgttctttgagatgattgttttgatgagtgtgtcattggttgtaacaatcataccctcagactt 37897862  T
Q  317 ggatgattgttttgatgttaaagcattgtggataaacttggcggtgttagatga 370  Q
    ||| |||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  37897863 ggacgattgttttgatgttaaagctttgtggataaacttggcggtgttatatga 37897916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 37895664 - 37895793
Alignment:
Q  60 ccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtct 159  Q
    ||||||||||||| |||| |||||||||||| ||||||||  || |||||||||||||||| | ||||||||| | |   |||||    |||||||||||    
T  37895664 ccttatgggaggtttatagcctaagaagtaattcgtggaggaaacttgatgttgacatgccttattctttggaatgtaaggaggg----cacccaagtct 37895759  T
Q  160 acttggatggagtgtgtcattggttgtgtaaaga 193  Q
    |  |||||| ||||||||||||||||||| ||||    
T  37895760 atatggatgaagtgtgtcattggttgtgtgaaga 37895793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 9568982 - 9569076
Alignment:
Q  153 caagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatga 250  Q
    ||||||||| || |||| |||||||||||||||||| |||||||   ||||||||| |  |||||||||||| |||| ||||||||||||||||||||    
T  9568982 caagtctacatgaatggtgtgtgtcattggttgtgtgaagaaga---agaagatagtcaggatggaccatgtttggtatcattttacttgagcaatga 9569076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 365
Target Start/End: Original strand, 9569099 - 9569158
Alignment:
Q  306 ccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggtgtta 365  Q
    |||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||    
T  9569099 ccctcatacttggatgattgtttcgatgttcaagcattgtggataaacttggtggtgtta 9569158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 361
Target Start/End: Complemental strand, 54295255 - 54295196
Alignment:
Q  302 cataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggt 361  Q
    |||| ||||| |||| |||||||||||||||||| ||||||||||||||| |||||||||    
T  54295255 catatcctcaaacttagatgattgttttgatgttcaagcattgtggataaccttggcggt 54295196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 153 - 259
Target Start/End: Complemental strand, 9602866 - 9602763
Alignment:
Q  153 caagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatg 252  Q
    ||||||||| ||||||| |||||||||||||||||  |||||||||||||   ||| |  ||||||  |||  |||| |||||||||||||||||||| |    
T  9602866 caagtctacatggatggtgtgtgtcattggttgtgggaagaagatgaaga---tagtcaagatggaagatggttggtatcattttacttgagcaatgagg 9602770  T
Q  253 tgttctt 259  Q
    | |||||    
T  9602769 tattctt 9602763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 9593946 - 9593887
Alignment:
Q  306 ccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggtgtta 365  Q
    |||||| |||||||||||||||| ||| || | ||||||||||||||||||| |||||||    
T  9593946 ccctcatacttggatgattgtttcgatcttcacgcattgtggataaacttggtggtgtta 9593887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 54295367 - 54295274
Alignment:
Q  154 aagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctg-atggaccatgtctggtgtcattttacttgagcaatga 250  Q
    |||||||| ||||||| |||||||||||||||||| |||   |||||||  ||    ||| ||||||||||| |||| ||||||||||||||||||||    
T  54295367 aagtctacatggatggtgtgtgtcattggttgtgtgaagtgcatgaagataat----ctgcatggaccatgtttggtatcattttacttgagcaatga 54295274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 9574226 - 9574276
Alignment:
Q  302 cataccctcagacttggatgattgttttgatgttaaagcattgtggataaa 352  Q
    |||||||||| |||| |||||| |||| |||||| ||||||||||||||||    
T  9574226 cataccctcatacttagatgatagtttcgatgttcaagcattgtggataaa 9574276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 259
Target Start/End: Original strand, 29144967 - 29145189
Alignment:
Q  33 attggttgggagacatctctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttgga 132  Q
    |||||| |||||| || || ||||  || ||||||||| ||||||  ||||||||||||| ||||||  || ||||||||  |||||| |||||||   |    
T  29144967 attggtcgggagaaatatcattaggacctttatgggagatatatagtctaagaagtaacttgtggaggaaacttgatgttagcatgccatcttcttcaca 29145066  T
Q  133 ctatgctgagggcacccacccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtc 232  Q
    |||| |||||||     |||||||| ||| ||| |||||||||||||||||||| | || ||||||||||||| |  ||||||||||||||| |||||||    
T  29145067 ctatactgaggg----aacccaagtatacctgggtggagtgtgtcattggttgtctgaaaaagatgaagaagaaaatcctgatggaccatgtttggtgtc 29145162  T
Q  233 attttacttgagcaatgatgtgttctt 259  Q
    |||||||||||| | ||| ||||||||    
T  29145163 attttacttgagtagtgaggtgttctt 29145189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 29299861 - 29299969
Alignment:
Q  149 cacccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaat 248  Q
    ||||||||||||| ||||||||||||| |||||||||||| || |||||||| || ||||||| | |||||||||| |||||||||||||||||||||||    
T  29299861 cacccaagtctacatggatggagtgtgccattggttgtgtgaaaaagatgaaaaacatagccccgctggaccatgtttggtgtcattttacttgagcaat 29299960  T
Q  249 gatgtgttc 257  Q
    || ||||||    
T  29299961 gaggtgttc 29299969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 197
Target Start/End: Original strand, 29012537 - 29012672
Alignment:
Q  58 gcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagt 157  Q
    ||||||||||||| |||||| |||||||||||||  |||||||||| || ||||||||||||||| ||||||||||| |  ||| ||    |||||||||    
T  29012537 gcccttatgggagatatatagcctaagaagtaacatgtggagagaactttatgttgacatgccgtattctttggactgtattgacgg----cacccaagt 29012632  T
Q  158 ctacttggatggagtgtgtcattggttgtgtaaagaagat 197  Q
    |||| |||||||||||||||||||||||| | ||||||||    
T  29012633 ctacatggatggagtgtgtcattggttgtctgaagaagat 29012672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 64 - 255
Target Start/End: Original strand, 34281623 - 34281807
Alignment:
Q  64 atgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtctactt 163  Q
    ||||||| |||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| |||||| | |||| ||    ||||||| ||||| |    
T  34281623 atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaagg----cacccaaatctacat 34281718  T
Q  164 ggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgt 255  Q
    ||| || |||||||||||||||||| || || ||    ||||||  ||   |||||||||| |||| |||||||||||||||||||| ||||    
T  34281719 ggacggtgtgtgtcattggttgtgtgaaaaacat---aaagataatcccattggaccatgtttggtatcattttacttgagcaatgaagtgt 34281807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 32745256 - 32745131
Alignment:
Q  59 cccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtc 158  Q
    |||||||||||| |||||| ||||||||||||||| |||||  || ||||||||||||||||| |||||||||||    | |||||    || ||| |||    
T  32745256 cccttatgggagatatatagcctaagaagtaactcctggaggaaacttgatgttgacatgccgccttctttggacaccacggaggg----caaccatgtc 32745161  T
Q  159 tacttggatggagtgtgtcattggttgtgt 188  Q
    ||| ||||||||||||||||||||||||||    
T  32745160 tacatggatggagtgtgtcattggttgtgt 32745131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 23218865 - 23218780
Alignment:
Q  174 tgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgttctt 259  Q
    ||||||||||||||| || |||| || ||||||| ||| | |||||||||| ||||||||||||||||||||||||| ||||||||    
T  23218865 tgtcattggttgtgtgaaaaagacgaggaagataaccccgttggaccatgtttggtgtcattttacttgagcaatgaggtgttctt 23218780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 186
Target Start/End: Complemental strand, 25319666 - 25319548
Alignment:
Q  65 tgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttgga-ctatgctgagggcacccacccaagtctactt 163  Q
    |||||| |||||| ||||||||||||||| |||||| || ||||| |||| ||||||||||||| |||  | | |||||||    ||||| ||||||| |    
T  25319666 tgggagatatatagcctaagaagtaactcatggagaaaacttgatattgagatgccgtcttcttgggagttgtactgaggg----cacccgagtctacat 25319571  T
Q  164 ggatggagtgtgtcattggttgt 186  Q
    |||||||||||||||||||||||    
T  25319570 ggatggagtgtgtcattggttgt 25319548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 186
Target Start/End: Complemental strand, 26149359 - 26149241
Alignment:
Q  65 tgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttgga-ctatgctgagggcacccacccaagtctactt 163  Q
    |||||| |||||| ||||||||||||||| |||||| || ||||| |||| ||||||||||||| |||  | | |||||||    ||||| ||||||| |    
T  26149359 tgggagatatatagcctaagaagtaactcatggagaaaacttgatattgagatgccgtcttcttgggagttgtactgaggg----cacccgagtctacat 26149264  T
Q  164 ggatggagtgtgtcattggttgt 186  Q
    |||||||||||||||||||||||    
T  26149263 ggatggagtgtgtcattggttgt 26149241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 29123805 - 29123928
Alignment:
Q  59 cccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtc 158  Q
    ||||||||||||  ||||| ||||||||||||||| |||||   | ||||||||||||||||| |||||||||||  | | |||||    || ||| |||    
T  29123805 cccttatgggag--atatagcctaagaagtaactcttggaggatacttgatgttgacatgccgccttctttggacactacagaggg----caaccatgtc 29123898  T
Q  159 tacttggatggagtgtgtcattggttgtgt 188  Q
    ||| ||||||||||||||||||||||||||    
T  29123899 tacatggatggagtgtgtcattggttgtgt 29123928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 257
Target Start/End: Original strand, 29131002 - 29131199
Alignment:
Q  50 tctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcaccc 149  Q
    |||||||||||||   ||||| |||||| |  || ||||||||| ||||||||| |||||||||||||||| | ||| || |||| |  ||  || ||||    
T  29131002 tctttagcgccct---gggagatatatagctcaaaaagtaactcatggagagaacttgatgttgacatgccttattcgttagactgtaatgcaggaaccc 29131098  T
Q  150 acccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatg 249  Q
    |    ||||||  ||||||| |||||||||||||||||| || || |||||||| ||   ||   |||||||||| |||| |||||||||||||||||||    
T  29131099 a----agtctatatggatggtgtgtgtcattggttgtgtgaaaaacatgaagaaaat---cccattggaccatgtttggtatcattttacttgagcaatg 29131191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 29152456 - 29152394
Alignment:
Q  72 tatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggact 134  Q
    |||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||    
T  29152456 tatatagcctaaggagtgactcgtggagagaacttgatgttgacatgccgtcttctgtggact 29152394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 190
Target Start/End: Complemental strand, 32961123 - 32960996
Alignment:
Q  59 cccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtc 158  Q
    |||||||||||| |||||| | |||||||||||||||||||  || ||||||||||||||||  |||||||  | |   | ||||||||||| |    ||    
T  32961123 cccttatgggagatatatagcgtaagaagtaactcgtggaggaaacttgatgttgacatgccaccttctttaaaatggtccgagggcacccatc----tc 32961028  T
Q  159 tacttggatggagtgtgtcattggttgtgtaa 190  Q
    ||| ||||||| ||||||||||||||||||||    
T  32961027 tacatggatggtgtgtgtcattggttgtgtaa 32960996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 365
Target Start/End: Complemental strand, 34258428 - 34258366
Alignment:
Q  303 ataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggtgtta 365  Q
    ||||||||| || | ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  34258428 ataccctcatacgttgatgattgttttgatgttaaagcaaagtggataaacttggcggtgtta 34258366  T

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Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 29145199 - 29145268
Alignment:
Q  302 cataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggtgttagatgat 371  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |||| ||| || |||||    
T  29145199 cataccctcagacttagatgattgtttcgatgttgaagcattgtggataaacctggcagtgataaatgat 29145268  T

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Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 29136958 - 29137083
Alignment:
Q  59 cccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtc 158  Q
    |||||||||||| |||||  ||||||||||||||| | |||  || |||| |||||||||||| ||||||||||   | | || ||    |||||| |||    
T  29136958 cccttatgggagatatatgacctaagaagtaactcctcgaggaaacttgaggttgacatgccgccttctttggatattacggaagg----cacccatgtc 29137053  T
Q  159 tacttggatggagtgtgtcattggttgtgt 188  Q
    ||| ||||||||||||||||||||||||||    
T  29137054 tacatggatggagtgtgtcattggttgtgt 29137083  T

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Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 34281815 - 34281884
Alignment:
Q  296 aacagtcataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggtgtta 365  Q
    ||||| ||||||| ||||| | ||||||||||||||||||||||||  ||||| |||||||| |||||||    
T  34281815 aacagccatacccccagacgtagatgattgttttgatgttaaagcaaagtggaaaaacttggtggtgtta 34281884  T

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Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 26090947 - 26090892
Alignment:
Q  205 atagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgttcttt 260  Q
    ||||||||| | ||||||||||||| |||||| ||||||||||||| |||||||||    
T  26090947 atagccctggtagaccatgtctggtatcatttaacttgagcaatgaggtgttcttt 26090892  T

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Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 29149091 - 29149028
Alignment:
Q  64 atgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttct 127  Q
    ||||||| | |||| ||||| ||||||||| ||||||||| || ||||||||||||||||||||    
T  29149091 atgggagatgtatagcctaaaaagtaactcatggagagaaatttatgttgacatgccgtcttct 29149028  T

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Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 364
Target Start/End: Original strand, 29131211 - 29131273
Alignment:
Q  302 cataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggtgtt 364  Q
    ||||||||||||| | |||||||||||||||||||||| |   |||||||||||||| |||||    
T  29131211 cataccctcagacgtagatgattgttttgatgttaaagaaaattggataaacttggcagtgtt 29131273  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 29152358 - 29152318
Alignment:
Q  215 tggaccatgtctggtgtcattttacttgagcaatgatgtgt 255  Q
    |||||||||| |||| |||||||||||||||||||| ||||    
T  29152358 tggaccatgtttggtatcattttacttgagcaatgaagtgt 29152318  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 34278841 - 34278773
Alignment:
Q  64 atgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttgga 132  Q
    ||||||| |||||| ||| | |||||| |||||||||||| |||||| || |||||||| |||| ||||    
T  34278841 atgggagatatatagcctgataagtaattcgtggagagaacttgatgctgtcatgccgtattctatgga 34278773  T

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Target: scaffold0134 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 16642 - 16410
Alignment:
Q  23 atatcttcagattggttgggagacatctctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgt 122  Q
    |||| |||| ||| ||||||| | || |||||||  || ||||||||| |||||| ||||| |||||||||||||||  || |||| ||||||||||| |    
T  16642 atatattcaaattcgttgggaaaaatatctttagaacctttatgggagatatatagcctaacaagtaactcgtggaggaaacttgacgttgacatgccat 16543  T
Q  123 cttctttggactatgctgagggcacccacccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccat 222  Q
     |||||   | | |  ||||||||||||    ||||||| | |||| | | ||||||||||||||| || |||| || ||||||| ||| | |||| |||    
T  16542 tttcttcaaaatgtaatgagggcaccca----agtctacatagatgaaatctgtcattggttgtgtgaaaaagacgaggaagataaccccgctggagcat 16447  T
Q  223 gtctggtgtcattttacttgagcaatgatgtgttctt 259  Q
    || ||||||||||||||||||||||||| ||||||||    
T  16446 gtttggtgtcattttacttgagcaatgaggtgttctt 16410  T

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Target: scaffold0134; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 16400 - 16344
Alignment:
Q  302 cataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggc 358  Q
    |||||||||| |||| |||||||||||||||||| ||||||  ||||||||||||||    
T  16400 cataccctcaaacttagatgattgttttgatgttgaagcatcatggataaacttggc 16344  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 42446008 - 42446150
Alignment:
Q  47 atctctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggca 146  Q
    ||||||||||   ||||||||||| ||||||  |||||||||||| |||||||  || |||||||||||||||| | ||||||||| | |  ||||||      
T  42446008 atctctttagactccttatgggagatatatagtctaagaagtaacccgtggaggaaacttgatgttgacatgccttattctttggaatgtattgaggg-- 42446105  T
Q  147 cccacccaagtctacttggatggagtgtgtcattggttgtgtaaaga 193  Q
      ||||||||||||| |||||||||||||||||||||||||| ||||    
T  42446106 --cacccaagtctacatggatggagtgtgtcattggttgtgtgaaga 42446150  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 42446187 - 42446231
Alignment:
Q  215 tggaccatgtctggtgtcattttacttgagcaatgatgtgttctt 259  Q
    |||||||||| |||| |||||| |||||||||||||||| |||||    
T  42446187 tggaccatgtttggtatcatttgacttgagcaatgatgtattctt 42446231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 258
Target Start/End: Complemental strand, 40187 - 40004
Alignment:
Q  62 ttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtctac 161  Q
    ||||||||| |||||| |||||||||||||||||||||| || ||||| |||||||||| |||||||   ||| |   |||||     ||||||||||||    
T  40187 ttatgggagatatatagcctaagaagtaactcgtggagaaaacttgatattgacatgccatcttcttcttactgtatagaggg----aacccaagtctac 40092  T
Q  162 ttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgttct 258  Q
     |||||||||||||||||||||||||         ||||||  ||| ||||| |||||||||| | || |||||||||||||| ||||| |||||||    
T  40091 atggatggagtgtgtcattggttgtg---------tgaagagaatacccctgctggaccatgtttagtatcattttacttgagaaatgaggtgttct 40004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 258
Target Start/End: Complemental strand, 33836 - 33653
Alignment:
Q  62 ttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtctac 161  Q
    ||||||||| |||||| |||||||||||||||||||||  || ||||| |||||||||| |||||||   ||| |   |||||     ||||||||||||    
T  33836 ttatgggagatatatagcctaagaagtaactcgtggaggaaacttgatattgacatgccatcttcttcttactgtatagaggg----aacccaagtctac 33741  T
Q  162 ttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgttct 258  Q
     |||||||||||||||||||||||||         ||||||  ||| ||||| |||||||||| | || |||||||||||||| ||||| |||||||    
T  33740 atggatggagtgtgtcattggttgtg---------tgaagagaatacccctgctggaccatgtttagtatcattttacttgagaaatgaggtgttct 33653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 5 - 90
Alignment:
Q  174 tgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgttctt 259  Q
    ||||||||||||||| || |||| || ||||||| ||| | || ||||||| ||||||||||||||||||||||||| ||||||||    
T  5 tgtcattggttgtgtgaaaaagacgaggaagataaccccgctgaaccatgtttggtgtcattttacttgagcaatgaggtgttctt 90  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 100 - 156
Alignment:
Q  302 cataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggc 358  Q
    |||||||||| |||| |||||||||||||||||| ||||||  ||||||||||||||    
T  100 cataccctcaaacttagatgattgttttgatgttgaagcatcctggataaacttggc 156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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