View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4545_high_4 (Length: 327)
Name: NF4545_high_4
Description: NF4545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4545_high_4 |
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[»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 370580 - 370916
Alignment:
Q |
1 |
gatatgagactctcaacgtagacattagaggtgaatgaagtagaaaggaggcattgaatgttaggagtctttgtagtgtgattcttgtaattgtaaacat |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
370580 |
gatatgagactctcaacgtagacattagagatgaatgaagttgaaaggaggcattgaatgttaggagtctttgtagtgtgattcttgtaattgtaaacat |
370679 |
T |
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Q |
101 |
atacctgatcaaagaagtccaaaatcaattggtcatcctcttcaaaaatataaaattgattgatggaatcagcatgaccaaattccgtcgcgaaagaaat |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
370680 |
atacctgatcaaagaagttcaaaatcaattggtcatcctcttcaaaaatataaaattgattgatggaatcagcatgaccaaattccgtcgcgaaagaaat |
370779 |
T |
|
Q |
201 |
attgaacaatttagtccaagaatctttatttc----------cataacccaaatgcccgtaaaagttttagtctgagcaaggatgcattagcaatcccta |
290 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| |
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T |
370780 |
attgaacaatttagtccaagaatctttatttccataattcttcataacccaaacgcccataaaagttttagtctgagcaaggatgcataagcaatcccta |
370879 |
T |
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Q |
291 |
gaaacctacaagtggaattcaagcagaggttcatcta |
327 |
Q |
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||||||| ||||||||||||||||||||||||||||| |
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T |
370880 |
gaaacctccaagtggaattcaagcagaggttcatcta |
370916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 1453636 - 1453737
Alignment:
Q |
5 |
tgagactctcaacgtagacattagaggtgaatgaagtagaaaggaggcattgaatgttaggagtctttgtagtgtgattcttgtaattgtaaacatatac |
104 |
Q |
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|||||||||||||||||||||||||||| || ||||| |||||| |||||| |||||| ||||| || ||||||||||||||||||||||||| |
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T |
1453636 |
tgagactctcaacgtagacattagaggtaaacctgttagaagggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatac |
1453735 |
T |
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Q |
105 |
ct |
106 |
Q |
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|| |
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T |
1453736 |
ct |
1453737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 1465328 - 1465429
Alignment:
Q |
5 |
tgagactctcaacgtagacattagaggtgaatgaagtagaaaggaggcattgaatgttaggagtctttgtagtgtgattcttgtaattgtaaacatatac |
104 |
Q |
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|||||||||||||||||||||||||||| || ||||| |||||| |||||| |||||| ||||| || ||||||||||||||||||||||||| |
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T |
1465328 |
tgagactctcaacgtagacattagaggtaaacctgttagaagggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatac |
1465427 |
T |
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Q |
105 |
ct |
106 |
Q |
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|| |
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T |
1465428 |
ct |
1465429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 176388 - 176354
Alignment:
Q |
203 |
tgaacaatttagtccaagaatctttatttccataa |
237 |
Q |
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||||||||||||||||||||||||||||||||||| |
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T |
176388 |
tgaacaatttagtccaagaatctttatttccataa |
176354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 1442105 - 1442139
Alignment:
Q |
203 |
tgaacaatttagtccaagaatctttatttccataa |
237 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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T |
1442105 |
tgaacaatttagtccaagaatctttaattccataa |
1442139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 1470922 - 1470954
Alignment:
Q |
205 |
aacaatttagtccaagaatctttatttccataa |
237 |
Q |
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T |
1470922 |
aacaatttagaccaagaatctttatttccataa |
1470954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 2442102 - 2442060
Alignment:
Q |
194 |
aagaaatattgaacaatttagtccaagaatctttatttccata |
236 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||| |
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T |
2442102 |
aagaaagagtgaacaatttagtccaagaatctttatttccata |
2442060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 989459 - 989420
Alignment:
Q |
194 |
aagaaatattgaacaatttagtccaagaatctttatttcc |
233 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||| |
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T |
989459 |
aagaaatagtgaacaatttagtccaagactctttatttcc |
989420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 4142126 - 4142164
Alignment:
Q |
198 |
aatattgaacaatttagtccaagaatctttatttccata |
236 |
Q |
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|||| ||||||||||||||||||| |||||||||||||| |
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T |
4142126 |
aatagtgaacaatttagtccaagactctttatttccata |
4142164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 4157932 - 4157974
Alignment:
Q |
194 |
aagaaatattgaacaatttagtccaagaatctttatttccata |
236 |
Q |
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|||| ||| ||||||||||||||||||| |||||||||||||| |
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T |
4157932 |
aagagatagtgaacaatttagtccaagactctttatttccata |
4157974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 1931142 - 1931183
Alignment:
Q |
194 |
aagaaatattgaacaatttagtccaagaatctttatttccat |
235 |
Q |
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|||||||| |||||||||||||||| || ||||||||||||| |
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T |
1931142 |
aagaaatagtgaacaatttagtccaggagtctttatttccat |
1931183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 6538888 - 6538855
Alignment:
Q |
203 |
tgaacaatttagtccaagaatctttatttccata |
236 |
Q |
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|||||||||||||||||||||||||||||||||| |
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T |
6538888 |
tgaacaatttagtccaagaatctttatttccata |
6538855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 7160752 - 7160784
Alignment:
Q |
204 |
gaacaatttagtccaagaatctttatttccata |
236 |
Q |
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||||||||||||||||||||| ||||||||||| |
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T |
7160752 |
gaacaatttagtccaagaatcattatttccata |
7160784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 7168688 - 7168720
Alignment:
Q |
204 |
gaacaatttagtccaagaatctttatttccata |
236 |
Q |
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||||||||||||||||||||| ||||||||||| |
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T |
7168688 |
gaacaatttagtccaagaatcgttatttccata |
7168720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 55419834 - 55419802
Alignment:
Q |
205 |
aacaatttagtccaagaatctttatttccataa |
237 |
Q |
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||||||||||||||||||||||||||||||||| |
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T |
55419834 |
aacaatttagtccaagaatctttatttccataa |
55419802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 22672115 - 22672157
Alignment:
Q |
194 |
aagaaatattgaacaatttagtccaagaatctttatttccata |
236 |
Q |
|
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|||||||| ||||||||||||||||||| || ||||||||||| |
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T |
22672115 |
aagaaatagtgaacaatttagtccaagattccttatttccata |
22672157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 23766853 - 23766892
Alignment:
Q |
197 |
aaatattgaacaatttagtccaagaatctttatttccata |
236 |
Q |
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||||| ||||||||||||||||||| |||||||||||||| |
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|
T |
23766853 |
aaatagtgaacaatttagtccaagactctttatttccata |
23766892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 23816701 - 23816740
Alignment:
Q |
197 |
aaatattgaacaatttagtccaagaatctttatttccata |
236 |
Q |
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||||| ||||||||||||||||||| |||||||||||||| |
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T |
23816701 |
aaatagtgaacaatttagtccaagactctttatttccata |
23816740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 3927112 - 3927079
Alignment:
Q |
204 |
gaacaatttagtccaagaatctttatttccataa |
237 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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T |
3927112 |
gaacaatttagtccaagaatttttatttccataa |
3927079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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